iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Ola-086835

Ensembl Protein ID

ENSORLP00000003074.1

UniProt Accession

H2LB07; H2LB07_ORYLA

Genbank Protein ID

ENSORLP00000003074

Protein Name

Eukaryotic translation initiation factor 3 subunit F; Eukaryotic translation initiation factor 3 subunit 5

Genbank Nucleotide ID

BAAF04033318

Gene Name

eif3f; EIF3F; EIF3S5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSORLG00000002475.1	ENSORLT00000003075.1	ENSORLP00000003074.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	79.55	7.00e-128	454.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Oryzias latipes

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

VYVFARAGKR SSFFKMSVYG PVVKIHPVVL ASICDSYERR NEGASRVIGT LLGTVDKHSI 60
EVTNCFSVPH NESEDEVAVD MEFAKNMYEL HKRVSPTEVI IGWYATGFDI TEHSVLIHEY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTATATGTGT TCGCTCGAGC CGGTAAACGG TCCTCTTTTT TCAAGATGTC GGTGTACGGG 60
CCAGTGGTGA AAATCCATCC CGTCGTTCTC GCATCTATCT GCGACTCGTA TGAGCGAAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	36.24	8.00e-48	184.00
IUUC-Aml-001527	Ailuropoda melanoleuca	79.78	5.00e-129	453.00
IUUC-Atr-002686	Amborella trichopoda	42.59	6.00e-53	200.00
IUUC-Apl-003977	Anas platyrhynchos	78.57	2.00e-106	378.00
IUUC-Aca-004335	Anolis carolinensis	77.70	1.00e-127	448.00
IUUC-Aly-005945	Arabidopsis lyrata	39.54	7.00e-53	200.00
IUUC-Ath-007045	Arabidopsis thaliana	39.16	1.00e-51	196.00
IUUC-Acl-008365	Aspergillus clavatus	35.16	5.00e-43	167.00
IUUC-Afl-008742	Aspergillus flavus	36.63	2.00e-40	159.00
IUUC-Afu-009030	Aspergillus fumigatus	35.16	4.00e-43	168.00
IUUC-Ani-009212	Aspergillus nidulans	35.77	5.00e-43	167.00
IUUC-Ang-009712	Aspergillus niger	35.04	3.00e-42	165.00
IUUC-Aor-009885	Aspergillus oryzae	36.26	2.00e-44	172.00
IUUC-Ate-010315	Aspergillus terreus	36.26	9.00e-40	157.00
IUUC-Ame-010801	Astyanax mexicanus	56.20	2.00e-76	278.00
IUUC-Bgr-011982	Blumeria graminis	34.06	5.00e-42	164.00
IUUC-Bta-012804	Bos taurus	79.93	2.00e-129	455.00
IUUC-Bci-013891	Botrytis cinerea	33.70	2.00e-36	145.00
IUUC-Bdi-014328	Brachypodium distachyon	38.52	3.00e-50	191.00
IUUC-Bol-015446	Brassica oleracea	38.78	1.00e-52	199.00
IUUC-Bra-016862	Brassica rapa	39.16	4.00e-53	201.00
IUUC-Cel-018171	Caenorhabditis elegans	34.62	9.00e-46	176.00
IUUC-Cja-019335	Callithrix jacchus	79.55	3.00e-129	454.00
IUUC-Cfa-020138	Canis familiaris	79.40	2.00e-128	451.00
IUUC-Cpo-022109	Cavia porcellus	70.80	2.00e-110	392.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	43.28	1.00e-64	239.00
IUUC-Csa-023994	Chlorocebus sabaeus	79.55	4.00e-129	454.00
IUUC-Cho-024351	Choloepus hoffmanni	60.30	1.00e-87	316.00
IUUC-Cin-025801	Ciona intestinalis	53.57	6.00e-85	306.00
IUUC-Csv-025805	Ciona savignyi	53.36	4.00e-82	297.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	29.09	3.00e-34	138.00
IUUC-Cne-026868	Cryptococcus neoformans	32.00	4.00e-31	128.00
IUUC-Cme-027328	Cyanidioschyzon merolae	28.08	1.00e-22	100.00
IUUC-Dre-028085	Danio rerio	86.96	6.00e-145	506.00
IUUC-Dno-030099	Dasypus novemcinctus	79.40	2.00e-128	452.00
IUUC-Dor-030324	Dipodomys ordii	71.16	1.00e-110	392.00
IUUC-Dse-031314	Dothistroma septosporum	36.63	4.00e-46	178.00
IUUC-Dme-031926	Drosophila melanogaster	48.38	2.00e-78	285.00
IUUC-Ete-032569	Echinops telfairi	74.72	1.00e-117	415.00
IUUC-Eca-033502	Equus caballus	76.58	3.00e-121	427.00
IUUC-Eeu-034883	Erinaceus europaeus	61.08	2.00e-59	221.00
IUUC-Fca-035873	Felis catus	79.78	8.00e-129	452.00
IUUC-Fal-036921	Ficedula albicollis	79.93	7.00e-131	459.00
IUUC-Fox-037765	Fusarium oxysporum	31.65	8.00e-32	130.00
IUUC-Fso-038240	Fusarium solani	32.37	3.00e-34	139.00
IUUC-Gmo-038864	Gadus morhua	90.65	1.00e-151	528.00
IUUC-Ggr-039862	Gaeumannomyces graminis	30.31	5.00e-32	131.00
IUUC-Gga-040952	Gallus gallus	79.55	6.00e-130	456.00
IUUC-Gac-041677	Gasterosteus aculeatus	91.32	7.00e-156	542.00
IUUC-Gma-043061	Glycine max	41.35	7.00e-50	190.00
IUUC-Ggo-045591	Gorilla gorilla	79.55	1.00e-129	455.00
IUUC-Hsa-046860	Homo sapiens	79.55	4.00e-129	454.00
IUUC-Hvu-047410	Hordeum vulgare	30.14	1.00e-20	91.70
IUUC-Itr-048211	Ictidomys tridecemlineatus	79.40	2.00e-128	451.00
IUUC-Lch-049410	Latimeria chalumnae	69.67	8.00e-84	302.00
IUUC-Lpe-051102	Leersia perrieri	40.39	1.00e-49	189.00
IUUC-Loc-052016	Lepisosteus oculatus	80.66	5.00e-128	449.00
IUUC-Lma-053157	Leptosphaeria maculans	36.26	2.00e-46	179.00
IUUC-Laf-054568	Loxodonta africana	79.18	9.00e-129	452.00
IUUC-Mcc-054613	Macaca mulatta	79.55	2.00e-129	455.00
IUUC-Meu-056832	Macropus eugenii	59.52	2.00e-67	248.00
IUUC-Mor-057104	Magnaporthe oryzae	29.45	2.00e-31	129.00
IUUC-Mtr-058445	Medicago truncatula	41.06	2.00e-62	232.00
IUUC-Mla-059038	Melampsora laricipopulina	31.38	2.00e-32	132.00
IUUC-Mga-059548	Meleagris gallopavo	79.24	1.00e-113	401.00
IUUC-Mvi-060520	Microbotryum violaceum	27.67	2.00e-22	99.40
IUUC-Mdo-062376	Monodelphis domestica	79.78	5.00e-130	456.00
IUUC-Mmu-063254	Mus musculus	79.78	2.00e-128	452.00
IUUC-Mac-065635	Musa acuminata	40.62	3.00e-55	207.00
IUUC-Mpu-066314	Mustela putorius furo	79.78	6.00e-129	453.00
IUUC-Mlu-067512	Myotis lucifugus	79.40	5.00e-128	450.00
IUUC-Nfi-068262	Neosartorya fischeri	35.16	5.00e-43	167.00
IUUC-Ncr-068872	Neurospora crassa	30.99	2.00e-31	129.00
IUUC-Nle-070118	Nomascus leucogenys	79.78	6.00e-129	453.00
IUUC-Opr-071228	Ochotona princeps	79.15	3.00e-112	397.00
IUUC-Ont-072600	Oreochromis niloticus	95.91	3.00e-154	536.00
IUUC-Oan-073584	Ornithorhynchus anatinus	78.81	6.00e-114	402.00
IUUC-Ocu-074542	Oryctolagus cuniculus	79.78	4.00e-129	454.00
IUUC-Oba-075923	Oryza barthii	39.92	2.00e-51	195.00
IUUC-Obr-076313	Oryza brachyantha	40.39	9.00e-51	193.00
IUUC-Ogl-076932	Oryza glaberrima	39.92	2.00e-51	195.00
IUUC-Ogu-078152	Oryza glumaepatula	39.92	2.00e-51	195.00
IUUC-Oin-079528	Oryza indica	39.92	2.00e-51	195.00
IUUC-Olo-080401	Oryza longistaminata	39.92	2.00e-51	195.00
IUUC-Ome-081553	Oryza meridionalis	40.30	1.00e-51	196.00
IUUC-Oni-082090	Oryza nivara	39.92	2.00e-51	195.00
IUUC-Opu-083583	Oryza punctata	40.39	2.00e-50	192.00
IUUC-Oru-084492	Oryza rufipogon	39.92	2.00e-51	195.00
IUUC-Osa-085383	Oryza sativa	39.92	2.00e-51	195.00
IUUC-Olu-087716	Ostreococcus lucimarinus	30.34	9.00e-32	130.00
IUUC-Oga-088886	Otolemur garnettii	80.15	2.00e-129	455.00
IUUC-Oar-090079	Ovis aries	79.93	1.00e-129	455.00
IUUC-Ptr-091457	Pan troglodytes	79.55	4.00e-129	454.00
IUUC-Pan-092317	Papio anubis	76.22	2.00e-81	294.00
IUUC-Psi-093129	Pelodiscus sinensis	76.06	3.00e-117	414.00
IUUC-Pma-094488	Petromyzon marinus	75.55	9.00e-128	449.00
IUUC-Pno-095049	Phaeosphaeria nodorum	36.26	1.00e-46	179.00
IUUC-Ppa-095341	Physcomitrella patens	42.32	5.00e-66	244.00
IUUC-Pfo-096286	Poecilia formosa	93.07	2.00e-153	534.00
IUUC-Pab-097765	Pongo abelii	79.55	4.00e-129	454.00
IUUC-Pop-099131	Populus trichocarpa	40.68	3.00e-56	211.00
IUUC-Pca-100524	Procavia capensis	66.24	3.00e-85	307.00
IUUC-Ppe-101934	Prunus persica	41.06	9.00e-61	226.00
IUUC-Pva-102577	Pteropus vampyrus	79.03	3.00e-128	451.00
IUUC-Pgr-103521	Puccinia graminis	28.66	6.00e-31	127.00
IUUC-Pte-104304	Pyrenophora teres	36.40	2.00e-46	179.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	36.40	1.00e-46	179.00
IUUC-Rno-105717	Rattus norvegicus	79.78	1.00e-128	452.00
IUUC-Sha-107190	Sarcophilus harrisii	80.08	5.00e-127	447.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	34.64	5.00e-44	171.00
IUUC-Spo-108355	Schizosaccharomyces pombe	35.56	5.00e-45	174.00
IUUC-Smo-109374	Selaginella moellendorffii	44.81	1.00e-68	252.00
IUUC-Sit-110119	Setaria italica	39.54	2.00e-51	195.00
IUUC-Sly-111570	Solanum lycopersicum	37.45	8.00e-50	190.00
IUUC-Stu-112308	Solanum tuberosum	40.08	5.00e-56	211.00
IUUC-Sar-113515	Sorex araneus	74.47	2.00e-38	151.00
IUUC-Sbi-114605	Sorghum bicolor	39.54	4.00e-51	195.00
IUUC-Sre-114906	Sporisorium reilianum	40.73	1.00e-55	209.00
IUUC-Tgu-117087	Taeniopygia guttata	77.97	1.00e-111	395.00
IUUC-Tru-117700	Takifugu rubripes	89.44	2.00e-154	537.00
IUUC-Tni-120470	Tetraodon nigroviridis	91.94	2.00e-152	530.00
IUUC-Tca-121109	Theobroma cacao	40.68	1.00e-49	189.00
IUUC-Tre-122095	Trichoderma reesei	32.85	1.00e-33	137.00
IUUC-Tvi-122580	Trichoderma virens	32.49	5.00e-33	134.00
IUUC-Tae-125129	Triticum aestivum	39.54	2.00e-52	198.00
IUUC-Tur-126658	Triticum urartu	34.83	2.00e-43	168.00
IUUC-Tme-127043	Tuber melanosporum	34.55	8.00e-47	180.00
IUUC-Tbe-127927	Tupaia belangeri	79.78	8.00e-129	452.00
IUUC-Ttr-129231	Tursiops truncatus	80.15	2.00e-129	455.00
IUUC-Uma-129578	Ustilago maydis	40.00	1.00e-53	202.00
IUUC-Vda-129730	Verticillium dahliae	30.80	2.00e-37	149.00
IUUC-Vpa-130677	Vicugna pacos	48.89	1.00e-27	116.00
IUUC-Vvi-130968	Vitis vinifera	40.68	6.00e-56	210.00
IUUC-Xtr-132203	Xenopus tropicalis	79.26	4.00e-129	453.00
IUUC-Xma-133972	Xiphophorus maculatus	93.77	3.00e-153	533.00
IUUC-Yli-134553	Yarrowia lipolytica	36.13	2.00e-43	169.00
IUUC-Zma-134941	Zea mays	40.75	6.00e-48	184.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence