iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d036707	Zm00001d036707_T001	Zm00001d036707_T001
Zm00001d036707	Zm00001d036707_T006	Zm00001d036707_T006
Zm00001d036707	Zm00001d036707_T003	Zm00001d036707_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	5.10e-69	235.0	214	513

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 9    tCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEfla 97
            C+ N vLQcLs +++l  +ll   ++++++     +++ ++l++lq  ++   +++ + ++p+++l++l ++  ++   +q+Da+Ef++
   Q: 214  FCFANVVLQCLSCTRPLVAYLLGkDHSRECSV---RHEDWCFLCELQCHIQRA-SGSLHPFAPTNILSHLPNIGGNLGVGRQEDAHEFMR 299
           7*********************9556666665...47899**********999.9999******************************** PP
   S: 98   flldqleeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkesl 187
           f +d++++++         +e          e+  +   +++++i+++F+g+l+sq++c +c+ vs+r+++++dl+++++g+ e    sl
   Q: 300  FAIDKMQSAC--------LDEY-------GGEKAVDLSIQETTIIQHIFGGRLQSQVQCTTCGMVSNRYDNMMDLTVEIQGDAE----SL 370
           **********........2222.......2335566788999*****************************************7....8* PP
   S: 188  qdcLesftkeeelegenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkk 277
           + cL++ft+ e l+g+nky+c+ c+++++a+k l++++ P++L++ LkRf    ++++  k+nk+v+fp eLdl+p+++ ++     ++ 
   Q: 371  ERCLDQFTAVEWLDGDNKYKCDGCNDYVKARKHLSVQQAPNILTITLKRF----QTGRFGKLNKRVTFPMELDLTPYMSCTDG----SDL 452
           **************************************************....557778*****************999554....679 PP
   S: 278  YeLiavvvHsGslss...GHYvayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkrr 338
           Y+L+avvvH   l+    GHY++y+k  +g+W+++dD kV +v+eeev     + aY+l+Y rr
   Q: 453  YDLYAVVVHLDMLNAsffGHYICYIKGYQGRWYKIDDCKVMVVDEEEVHA---QGAYMLLYSRR 513
           *********995554455********************************...********985 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MLGGGAGGGG AGAGLGLDLS AVIQAAVVGL VLFSAAVVAV RRAASRYFVV DAAGFAASYD 60
DHHHSSPASP MSSKGNRPEQ GGAAADLTGP CAACGVVTSK KCSGCKRVRY CSQECQTKHW 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GGTGCGGCTG GACCAGTTAG GATTCGGACT CGGTCCGCGC TGCGGCCTGT GTCACCTGTG 60
TCCGGGCGGC TCGCAGTCTG GTTGGGCTCG GATGGTCGGT GCCGGACGCC GGGCGCGGAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0378--Hydrolase
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR028889--USP_dom
IPR002893--Znf_MYND

PROSITE

PS50235--USP_3
PS01360--ZF_MYND_1
PS50865--ZF_MYND_2

Pfam

PF00443--UCH
PF01753--zf-MYND

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0046872--F:metal ion binding
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001055	Aegilops tauschii	58.84	0.00e+00	872.00
IUUC-Atr-002997	Amborella trichopoda	58.06	4.00e-141	494.00
IUUC-Aly-005942	Arabidopsis lyrata	59.64	3.00e-148	518.00
IUUC-Ath-007334	Arabidopsis thaliana	60.63	5.00e-156	544.00
IUUC-Bdi-014660	Brachypodium distachyon	58.55	0.00e+00	955.00
IUUC-Bol-015083	Brassica oleracea	59.04	3.00e-157	548.00
IUUC-Bra-017569	Brassica rapa	62.27	4.00e-158	550.00
IUUC-Gma-042920	Glycine max	56.40	2.00e-160	559.00
IUUC-Hvu-047620	Hordeum vulgare	60.33	0.00e+00	985.00
IUUC-Lpe-051385	Leersia perrieri	54.99	0.00e+00	831.00
IUUC-Mtr-057748	Medicago truncatula	57.98	3.00e-163	568.00
IUUC-Mac-065204	Musa acuminata	62.08	3.00e-170	590.00
IUUC-Oba-075131	Oryza barthii	62.50	0.00e+00	978.00
IUUC-Obr-076763	Oryza brachyantha	59.71	0.00e+00	949.00
IUUC-Ogl-077264	Oryza glaberrima	62.83	0.00e+00	1031.00
IUUC-Ogu-078646	Oryza glumaepatula	62.93	0.00e+00	1031.00
IUUC-Oin-079613	Oryza indica	60.54	0.00e+00	980.00
IUUC-Olo-080250	Oryza longistaminata	62.73	0.00e+00	1021.00
IUUC-Ome-081416	Oryza meridionalis	62.73	0.00e+00	1033.00
IUUC-Oni-082102	Oryza nivara	62.76	0.00e+00	1025.00
IUUC-Opu-083135	Oryza punctata	61.35	0.00e+00	986.00
IUUC-Oru-084644	Oryza rufipogon	62.93	0.00e+00	1031.00
IUUC-Osa-086195	Oryza sativa	62.71	0.00e+00	986.00
IUUC-Ppa-095936	Physcomitrella patens	56.93	5.00e-125	442.00
IUUC-Pop-099611	Populus trichocarpa	56.01	9.00e-165	573.00
IUUC-Ppe-101845	Prunus persica	58.91	2.00e-151	528.00
IUUC-Smo-109625	Selaginella moellendorffii	51.50	4.00e-128	451.00
IUUC-Sit-109798	Setaria italica	73.37	0.00e+00	1293.00
IUUC-Sly-111333	Solanum lycopersicum	58.19	2.00e-166	578.00
IUUC-Stu-112696	Solanum tuberosum	56.70	3.00e-105	374.00
IUUC-Sbi-113982	Sorghum bicolor	84.38	0.00e+00	1497.00
IUUC-Tca-121521	Theobroma cacao	60.00	4.00e-167	581.00
IUUC-Tae-123937	Triticum aestivum	59.52	0.00e+00	1014.00
IUUC-Tur-126423	Triticum urartu	59.58	0.00e+00	910.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence