iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d037932	Zm00001d037932_T009	Zm00001d037932_T009
Zm00001d037932	Zm00001d037932_T003	Zm00001d037932_T003
Zm00001d037932	Zm00001d037932_T020	Zm00001d037932_T020
Zm00001d037932	Zm00001d037932_T022	Zm00001d037932_T022
Zm00001d037932	Zm00001d037932_T004	Zm00001d037932_T004
Zm00001d037932	Zm00001d037932_T005	Zm00001d037932_T005
Zm00001d037932	Zm00001d037932_T006	Zm00001d037932_T006
Zm00001d037932	Zm00001d037932_T023	Zm00001d037932_T023
Zm00001d037932	Zm00001d037932_T007	Zm00001d037932_T007
Zm00001d037932	Zm00001d037932_T002	Zm00001d037932_T002

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.20e-06	29.8	1035	1069

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sdtllvsGsdDgtikvWDlrtgv 34
           H+  vtc+++  ++  l+sGs D++i+vW++ + +
   Q: 1035 HKKAVTCFSLseTGENLLSGSADKSIRVWEMAQRK 1069
           8999******8655779*************87655 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MPTAPAAVLP RTCMDSLIAF LHHHLRALLA DPAALHATRR RCLALLTPPR RHHCRKNLSG 60
AQEEEENEDD AVLAALHGSI DALLPSPVDG AAAVCLAGVE EALQAPALLP EHGETAGLDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCCGACGG CGCCAGCGGC GGTGCTGCCG CGCACTTGCA TGGACTCCCT CATCGCCTTC 60
CTCCACCACC ACCTGCGCGC GCTCCTCGCC GACCCCGCCG CGCTCCACGC CACGCGCCGC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR011989--ARM-like
IPR016024--ARM-type_fold
IPR016346--Guanine_nucleotide-bd_bsu
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0007165--P:signal transduction

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000535	Aegilops tauschii	75.61	0.00e+00	1650.00
IUUC-Atr-002498	Amborella trichopoda	43.27	0.00e+00	647.00
IUUC-Aly-006263	Arabidopsis lyrata	33.33	3.00e-168	585.00
IUUC-Ath-006648	Arabidopsis thaliana	35.17	0.00e+00	750.00
IUUC-Bdi-014493	Brachypodium distachyon	75.10	0.00e+00	1583.00
IUUC-Bol-016092	Brassica oleracea	35.89	0.00e+00	728.00
IUUC-Bra-016701	Brassica rapa	42.01	0.00e+00	709.00
IUUC-Gma-043180	Glycine max	37.38	0.00e+00	809.00
IUUC-Hvu-047807	Hordeum vulgare	74.67	0.00e+00	694.00
IUUC-Lpe-051180	Leersia perrieri	71.39	0.00e+00	1667.00
IUUC-Mtr-057703	Medicago truncatula	46.37	0.00e+00	726.00
IUUC-Mac-064996	Musa acuminata	48.41	0.00e+00	1122.00
IUUC-Oba-075721	Oryza barthii	76.38	0.00e+00	1635.00
IUUC-Obr-076233	Oryza brachyantha	76.01	0.00e+00	1617.00
IUUC-Ogl-077542	Oryza glaberrima	76.17	0.00e+00	1652.00
IUUC-Ogu-078363	Oryza glumaepatula	74.50	0.00e+00	1714.00
IUUC-Oin-079050	Oryza indica	76.23	0.00e+00	1677.00
IUUC-Olo-080332	Oryza longistaminata	71.85	0.00e+00	1506.00
IUUC-Ome-081772	Oryza meridionalis	75.54	0.00e+00	1717.00
IUUC-Oni-082467	Oryza nivara	74.20	0.00e+00	1683.00
IUUC-Opu-083132	Oryza punctata	76.83	0.00e+00	1733.00
IUUC-Oru-084836	Oryza rufipogon	74.34	0.00e+00	1714.00
IUUC-Osa-085493	Oryza sativa	76.41	0.00e+00	1644.00
IUUC-Pop-099360	Populus trichocarpa	38.19	0.00e+00	755.00
IUUC-Ppe-102099	Prunus persica	47.12	0.00e+00	768.00
IUUC-Sit-110371	Setaria italica	83.18	0.00e+00	2046.00
IUUC-Sly-111793	Solanum lycopersicum	47.56	0.00e+00	757.00
IUUC-Stu-112760	Solanum tuberosum	38.21	0.00e+00	781.00
IUUC-Sbi-114833	Sorghum bicolor	89.15	0.00e+00	1715.00
IUUC-Tca-121753	Theobroma cacao	45.83	0.00e+00	816.00
IUUC-Tae-124317	Triticum aestivum	76.56	0.00e+00	1663.00
IUUC-Tur-126343	Triticum urartu	74.35	0.00e+00	1627.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence