iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Zma-135817

Ensembl Protein ID

Zm00001d040279_T012

UniProt Accession

A0A1D6MPR3; A0A1D6MPR3_MAIZE

Genbank Protein ID

ONM31013.1; ONM31020.1

Protein Name

Topless-related1

Genbank Nucleotide ID

CM007649; CM007649

Gene Name

ZEAMMB73_Zm00001d040279

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d040279	Zm00001d040279_T014	Zm00001d040279_T014
Zm00001d040279	Zm00001d040279_T002	Zm00001d040279_T002
Zm00001d040279	Zm00001d040279_T016	Zm00001d040279_T016
Zm00001d040279	Zm00001d040279_T012	Zm00001d040279_T012
Zm00001d040279	Zm00001d040279_T010	Zm00001d040279_T010
Zm00001d040279	Zm00001d040279_T001	Zm00001d040279_T001
Zm00001d040279	Zm00001d040279_T019	Zm00001d040279_T019
Zm00001d040279	Zm00001d040279_T021	Zm00001d040279_T021
Zm00001d040279	Zm00001d040279_T003	Zm00001d040279_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.10e-25	90.6	443	476
UBD/Beta-Prp	3.30e-41	143.4	401	651

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlr 31
           H+++v+++af  ++  l +v+++dD+ ikvWD++
   Q: 443  HSGGVNDIAFsrPNkQLcVVTCGDDKLIKVWDMH 476
           9**********9774334799***********75 PP

UBD/Beta-Prp

   S: 12   vitcvkfspdksllatgsrdgtikvwdvttgkl...lrslsgheaevtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkgheds 96
            i+ v++spd++++ ++++ + i ++ +++++    l +++ h+++v+++ fs+  k    vt+++D++ikvwd+   k   t++ghe+ 
   Q: 401  SINQVTWSPDGEMIGVAFTKHLIHLHGYQPPNEtrhLLEIEAHSGGVNDIAFSRPNKqlCVVTCGDDKLIKVWDMHGHKL-FTFEGHEAP 489
           5788999***********************99977777789************98888999**************97775.59******* PP
   S: 97   vlslsfsp..sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtl...tg 177
           v+s+  +   s +++ s+s d  i+ w  ++     + +++  ++ +++ ++ dg  l+s+++    D+ +  W+ + g++ rt    ++
   Q: 490  VYSICPHHkeSIQFIFSTSLDGKIKAWLYDNMGSRVDYDAPG-KWCTTMLYSADGTRLFSCGTskegDSYLVEWNESEGSIKRTYsgfRK 578
           ***988876555***************999877777566655.59999999999999999987444467777788899999999966655 PP
   S: 178  ghtdsvyslsfdsngkelvsgsldgtvklwdlqtgec..vrtlnghtdnvksvrfspnderlvsgssDgsiri 248
              +    ++fd  +++++++++d+ +k+wd+ ++++      +g      ++rf +++++l+++++D+  +i
   Q: 579  RSAGVAGVVQFDTAQNHILAAGEDNHIKFWDVDNNNMliCTDAEGGLPALPRLRFNKEGNLLAVTTADNGFKI 651
           5566666777***********************8886223444444466677899999999999999988776 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFFFNMKY FEEKVHAGEW DEVERYLSGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDRHDR AKAVDILVKD LKVFSTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACTCGACCTA TCATATAAGT ACGTGCAGAT ATCAATAAGC TTACCCACTT ATCAATAAGG 60
ACATGTGCTT CTCACAGATA AGCCAGTGCT GGGTGGCGTG GGGAGAGAGA AAAGGGCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR003143--Cyt_cd1_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

KEGG

zma:103649954

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000072	Aegilops tauschii	81.12	0.00e+00	1753.00
IUUC-Aly-005503	Arabidopsis lyrata	70.33	0.00e+00	1582.00
IUUC-Ath-006901	Arabidopsis thaliana	70.68	0.00e+00	1595.00
IUUC-Bdi-014677	Brachypodium distachyon	86.95	0.00e+00	1947.00
IUUC-Bol-016487	Brassica oleracea	69.04	0.00e+00	1530.00
IUUC-Bra-016798	Brassica rapa	68.60	0.00e+00	1519.00
IUUC-Gma-042940	Glycine max	72.03	0.00e+00	1671.00
IUUC-Hvu-047370	Hordeum vulgare	86.95	0.00e+00	2001.00
IUUC-Lpe-050951	Leersia perrieri	87.29	0.00e+00	1912.00
IUUC-Mtr-058168	Medicago truncatula	72.79	0.00e+00	1684.00
IUUC-Mac-064999	Musa acuminata	74.81	0.00e+00	1769.00
IUUC-Oba-075415	Oryza barthii	88.61	0.00e+00	2035.00
IUUC-Obr-076726	Oryza brachyantha	87.82	0.00e+00	2033.00
IUUC-Ogl-077810	Oryza glaberrima	88.61	0.00e+00	2035.00
IUUC-Ogu-078090	Oryza glumaepatula	88.61	0.00e+00	2035.00
IUUC-Oin-080158	Oryza indica	87.63	0.00e+00	2008.00
IUUC-Olo-080271	Oryza longistaminata	86.94	0.00e+00	1984.00
IUUC-Ome-081965	Oryza meridionalis	88.26	0.00e+00	2021.00
IUUC-Oni-082421	Oryza nivara	88.44	0.00e+00	2033.00
IUUC-Opu-083912	Oryza punctata	88.70	0.00e+00	2030.00
IUUC-Oru-085201	Oryza rufipogon	88.61	0.00e+00	2035.00
IUUC-Osa-086161	Oryza sativa	88.61	0.00e+00	2035.00
IUUC-Pop-099188	Populus trichocarpa	71.97	0.00e+00	1632.00
IUUC-Ppe-102061	Prunus persica	71.63	0.00e+00	1653.00
IUUC-Sit-110487	Setaria italica	95.50	0.00e+00	2141.00
IUUC-Sly-111169	Solanum lycopersicum	69.77	0.00e+00	1272.00
IUUC-Stu-112369	Solanum tuberosum	69.54	0.00e+00	1269.00
IUUC-Sbi-113873	Sorghum bicolor	96.89	0.00e+00	2203.00
IUUC-Tae-125312	Triticum aestivum	86.32	0.00e+00	1971.00
IUUC-Tur-126477	Triticum urartu	81.60	0.00e+00	1941.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence