iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d043682	Zm00001d043682_T001	Zm00001d043682_T001
Zm00001d043682	Zm00001d043682_T002	Zm00001d043682_T002
Zm00001d043682	Zm00001d043682_T012	Zm00001d043682_T012
Zm00001d043682	Zm00001d043682_T003	Zm00001d043682_T003
Zm00001d043682	Zm00001d043682_T005	Zm00001d043682_T005
Zm00001d043682	Zm00001d043682_T007	Zm00001d043682_T007
Zm00001d043682	Zm00001d043682_T011	Zm00001d043682_T011
Zm00001d043682	Zm00001d043682_T006	Zm00001d043682_T006

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.30e-22	78.5	334	364

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tllvsGsdDgtikvWD 29
           H+++v+c+++   d +++++Gs D+++++WD
   Q: 334  HSGDVHCVDWnpLDvNYILTGSADNSVRMWD 364
           ************888**************** PP

Organism

Zea mays

Protein Sequence
(Fasta)

MLSSPCSQSG HRDCLRRPEQ AASVQVRSSR RRRPSVSEMK ERGGSRAAVD ERYAQWKSLI 60
PVLYDWFANH NLVWPSLSCR WGPQFEKATY KNRQRLYLSE QASASASIYY FISTDGSVPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGCTCTCCT CTCCCTGCTC GCAGTCAGGG CACAGGGACT GCCTCCGGAG ACCGGAGCAG 60
GCCGCAAGCG TCCAGGTTCG AGACGCCAGC ACGCTCTCGC AGTACAGCAG CATTATCAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0005634--C:nucleus

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003045	Amborella trichopoda	69.84	0.00e+00	645.00
IUUC-Aly-006131	Arabidopsis lyrata	68.35	0.00e+00	689.00
IUUC-Ath-007494	Arabidopsis thaliana	68.35	0.00e+00	690.00
IUUC-Bdi-014938	Brachypodium distachyon	79.76	0.00e+00	760.00
IUUC-Bol-015567	Brassica oleracea	69.57	0.00e+00	691.00
IUUC-Bra-017393	Brassica rapa	69.92	0.00e+00	692.00
IUUC-Gma-042982	Glycine max	70.93	0.00e+00	688.00
IUUC-Mtr-057993	Medicago truncatula	70.19	0.00e+00	694.00
IUUC-Obr-076021	Oryza brachyantha	79.04	0.00e+00	737.00
IUUC-Ogl-077211	Oryza glaberrima	78.09	0.00e+00	723.00
IUUC-Oin-079269	Oryza indica	79.51	0.00e+00	730.00
IUUC-Olo-080631	Oryza longistaminata	71.29	0.00e+00	646.00
IUUC-Osa-085579	Oryza sativa	79.51	0.00e+00	730.00
IUUC-Olu-087795	Ostreococcus lucimarinus	36.85	3.00e-74	271.00
IUUC-Pop-099098	Populus trichocarpa	69.28	0.00e+00	665.00
IUUC-Ppe-101724	Prunus persica	70.14	0.00e+00	671.00
IUUC-Sit-110597	Setaria italica	86.38	0.00e+00	778.00
IUUC-Sly-111411	Solanum lycopersicum	68.30	0.00e+00	650.00
IUUC-Stu-112285	Solanum tuberosum	75.99	7.00e-163	565.00
IUUC-Sbi-114341	Sorghum bicolor	85.98	0.00e+00	767.00
IUUC-Tca-121523	Theobroma cacao	69.70	0.00e+00	673.00
IUUC-Tae-125281	Triticum aestivum	78.39	0.00e+00	741.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence