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Tag Content
UUCD2 ID IUUC-Ssc-116305
UUCD1 version UUC-SuS-00007
Ensembl Protein ID ENSSSCP00000007996.2
UniProt Accession A5GFN6; RAEL1_PIG
Genbank Protein ID CAN13252.1
Protein Name mRNA export factor; Rae1 protein homolog; mRNA-associated protein mrnp 41
Genbank Nucleotide ID CR956362
Gene Name RAE1; MRNP41
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
ENSSSCG00000007503.3 ENSSSCT00000008215.3 ENSSSCP00000007996.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.20e-18 66.7 126 162
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 2    Htdsvtclaf...sd.tllvsGsdDgtikvWDlrtgv 34
           H ++v  +++   ++   + +Gs+D+t+k WD+r+ +
   Q: 126  HDAPVKTIHWikaPNySCVMTGSWDKTLKFWDTRSSN 162
           999**********877789*************99865 PP
   
Organism Sus scrofa
Functional Description
(View)

Functional Description


     Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton (By similarity).
 Binds mRNA. May function in nucleocytoplasmic transport and in directly or indirectly attaching cytoplasmic mRNPs to the cytoskeleton (By similarity).
Protein Sequence
(Fasta)
MSLFGTTSGF GTSGTSMFGS TTTDNHNPMK DIEVTSSPDD SIGCLSFSPP TLPGNFLIAG 60
SWANDVRCWE VQDSGQTIPK AQQMHTGPVL DVCWSDDGSK VFTASCDKTA KMWDLNSNQA 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ssc-116305|E3,WD_repeat|Sus scrofa
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CATGCGCAGC GGCCCCCACG GTAAATAGGG CAGTTTTTTA GGCCAGCGTG AGACCTCGAG 60
GTCGGAAGAT AACTGTCGCT GCCGCCTTGC CTTCGCCTCG TCCACGCCCG AGCCGGGTCA 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ssc-116305|E3,WD_repeat|Sus scrofa
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat
Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005737--C:cytoplasm
GO:0001650--C:fibrillar center
GO:0005643--C:nuclear pore
GO:0003723--F:RNA binding
GO:0071407--P:cellular response to organic cyclic compound
KEGG ssc:100125839
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000293 Aegilops tauschii 47.14 1.00e-82 299.00
IUUC-Aml-002179 Ailuropoda melanoleuca 99.71 0.00e+00 730.00
IUUC-Atr-002609 Amborella trichopoda 50.44 8.00e-94 336.00
IUUC-Apl-003637 Anas platyrhynchos 95.94 0.00e+00 706.00
IUUC-Aca-005042 Anolis carolinensis 95.94 0.00e+00 705.00
IUUC-Aly-006015 Arabidopsis lyrata 50.84 6.00e-98 350.00
IUUC-Ath-007659 Arabidopsis thaliana 50.56 1.00e-97 349.00
IUUC-Ago-008004 Ashbya gossypii 41.16 5.00e-73 267.00
IUUC-Acl-008030 Aspergillus clavatus 46.04 5.00e-81 294.00
IUUC-Afl-008636 Aspergillus flavus 46.04 1.00e-80 293.00
IUUC-Afu-009121 Aspergillus fumigatus 46.63 2.00e-82 298.00
IUUC-Ani-009238 Aspergillus nidulans 45.75 3.00e-80 291.00
IUUC-Ang-009801 Aspergillus niger 45.80 6.00e-82 297.00
IUUC-Aor-009974 Aspergillus oryzae 46.04 1.00e-80 293.00
IUUC-Ate-010406 Aspergillus terreus 45.75 1.00e-81 296.00
IUUC-Ame-011368 Astyanax mexicanus 92.17 0.00e+00 696.00
IUUC-Bgr-012233 Blumeria graminis 42.62 5.00e-71 261.00
IUUC-Bta-012856 Bos taurus 99.71 0.00e+00 730.00
IUUC-Bci-013964 Botrytis cinerea 45.16 1.00e-75 276.00
IUUC-Bdi-015050 Brachypodium distachyon 49.00 2.00e-85 308.00
IUUC-Bol-015367 Brassica oleracea 50.28 1.00e-94 338.00
IUUC-Bra-016903 Brassica rapa 50.28 1.00e-94 338.00
IUUC-Cel-018563 Caenorhabditis elegans 51.21 2.00e-100 358.00
IUUC-Cja-019700 Callithrix jacchus 99.71 0.00e+00 729.00
IUUC-Cfa-020337 Canis familiaris 100.00 0.00e+00 731.00
IUUC-Cpo-021858 Cavia porcellus 99.42 0.00e+00 728.00
IUUC-Cre-022748 Chlamydomonas reinhardtii 44.63 2.00e-82 298.00
IUUC-Csa-023322 Chlorocebus sabaeus 99.42 0.00e+00 727.00
IUUC-Cho-024533 Choloepus hoffmanni 71.88 1.00e-136 479.00
IUUC-Cin-025393 Ciona intestinalis 72.36 7.00e-164 569.00
IUUC-Csv-026093 Ciona savignyi 72.16 2.00e-162 564.00
IUUC-Cgl-026503 Colletotrichum gloeosporioides 36.59 1.00e-53 202.00
IUUC-Cne-026774 Cryptococcus neoformans 42.53 9.00e-68 250.00
IUUC-Cme-027243 Cyanidioschyzon merolae 36.62 2.00e-65 242.00
IUUC-Dre-028159 Danio rerio 92.75 0.00e+00 697.00
IUUC-Dno-028852 Dasypus novemcinctus 100.00 0.00e+00 731.00
IUUC-Dor-030445 Dipodomys ordii 83.19 2.00e-167 581.00
IUUC-Dse-031161 Dothistroma septosporum 42.69 3.00e-66 245.00
IUUC-Dme-032009 Drosophila melanogaster 68.77 1.00e-147 515.00
IUUC-Eca-033306 Equus caballus 99.42 0.00e+00 728.00
IUUC-Fca-035579 Felis catus 100.00 0.00e+00 731.00
IUUC-Fal-037582 Ficedula albicollis 96.52 0.00e+00 710.00
IUUC-Fox-037772 Fusarium oxysporum 42.43 3.00e-72 265.00
IUUC-Fso-038368 Fusarium solani 41.96 1.00e-72 266.00
IUUC-Gmo-038500 Gadus morhua 90.14 0.00e+00 680.00
IUUC-Ggr-040019 Gaeumannomyces graminis 42.48 6.00e-73 267.00
IUUC-Gga-040684 Gallus gallus 96.52 0.00e+00 708.00
IUUC-Gac-042592 Gasterosteus aculeatus 91.30 0.00e+00 687.00
IUUC-Gma-042917 Glycine max 51.86 6.00e-95 340.00
IUUC-Ggo-044965 Gorilla gorilla 99.71 0.00e+00 728.00
IUUC-Hsa-046779 Homo sapiens 99.68 0.00e+00 669.00
IUUC-Hvu-047380 Hordeum vulgare 48.72 1.00e-86 312.00
IUUC-Itr-048819 Ictidomys tridecemlineatus 99.71 0.00e+00 729.00
IUUC-Kpa-049284 Komagataella pastoris 42.19 1.00e-74 272.00
IUUC-Lch-050559 Latimeria chalumnae 81.40 1.00e-179 622.00
IUUC-Lpe-051050 Leersia perrieri 51.16 5.00e-94 337.00
IUUC-Loc-052874 Lepisosteus oculatus 91.88 0.00e+00 686.00
IUUC-Lma-053085 Leptosphaeria maculans 39.71 7.00e-64 237.00
IUUC-Laf-053980 Loxodonta africana 99.71 0.00e+00 730.00
IUUC-Mcc-055408 Macaca mulatta 99.71 0.00e+00 729.00
IUUC-Meu-056551 Macropus eugenii 89.35 0.00e+00 637.00
IUUC-Mor-057248 Magnaporthe oryzae 42.94 8.00e-76 276.00
IUUC-Mpo-057390 Magnaporthe poae 40.95 3.00e-72 265.00
IUUC-Mtr-057675 Medicago truncatula 51.12 3.00e-96 344.00
IUUC-Mla-059155 Melampsora laricipopulina 42.90 1.00e-84 306.00
IUUC-Mga-060140 Meleagris gallopavo 96.70 2.00e-180 624.00
IUUC-Mvi-060311 Microbotryum violaceum 45.29 2.00e-80 291.00
IUUC-Mmr-061533 Microcebus murinus 99.71 0.00e+00 729.00
IUUC-Mdo-062593 Monodelphis domestica 97.97 0.00e+00 721.00
IUUC-Mmu-063362 Mus musculus 99.71 0.00e+00 729.00
IUUC-Mac-064968 Musa acuminata 48.08 4.00e-84 304.00
IUUC-Mpu-065722 Mustela putorius furo 99.42 0.00e+00 731.00
IUUC-Mlu-068124 Myotis lucifugus 99.71 0.00e+00 730.00
IUUC-Nfi-068595 Neosartorya fischeri 46.63 2.00e-82 298.00
IUUC-Ncr-068790 Neurospora crassa 41.85 7.00e-74 270.00
IUUC-Nle-069395 Nomascus leucogenys 84.93 1.00e-170 592.00
IUUC-Opr-070320 Ochotona princeps 90.72 0.00e+00 650.00
IUUC-Ont-071303 Oreochromis niloticus 92.75 0.00e+00 696.00
IUUC-Oan-073724 Ornithorhynchus anatinus 97.10 0.00e+00 716.00
IUUC-Ocu-074961 Oryctolagus cuniculus 98.44 0.00e+00 667.00
IUUC-Oba-075879 Oryza barthii 51.64 9.00e-93 333.00
IUUC-Obr-076326 Oryza brachyantha 50.57 8.00e-94 336.00
IUUC-Ogl-077767 Oryza glaberrima 51.16 6.00e-94 337.00
IUUC-Ogu-078760 Oryza glumaepatula 50.14 4.00e-90 324.00
IUUC-Oin-080219 Oryza indica 51.16 6.00e-94 337.00
IUUC-Olo-081007 Oryza longistaminata 51.16 6.00e-94 337.00
IUUC-Ome-081848 Oryza meridionalis 47.55 8.00e-88 316.00
IUUC-Oni-082844 Oryza nivara 51.16 6.00e-94 337.00
IUUC-Opu-083511 Oryza punctata 47.81 2.00e-89 322.00
IUUC-Oru-085012 Oryza rufipogon 51.16 6.00e-94 337.00
IUUC-Osa-085287 Oryza sativa 51.16 6.00e-94 337.00
IUUC-Ola-087292 Oryzias latipes 92.17 0.00e+00 692.00
IUUC-Olu-087689 Ostreococcus lucimarinus 49.27 3.00e-91 327.00
IUUC-Oga-088821 Otolemur garnettii 100.00 0.00e+00 731.00
IUUC-Oar-090253 Ovis aries 100.00 0.00e+00 731.00
IUUC-Ptr-091097 Pan troglodytes 98.26 0.00e+00 719.00
IUUC-Pan-091835 Papio anubis 99.71 0.00e+00 729.00
IUUC-Psi-093000 Pelodiscus sinensis 96.24 0.00e+00 710.00
IUUC-Pma-094273 Petromyzon marinus 85.60 0.00e+00 682.00
IUUC-Pno-094920 Phaeosphaeria nodorum 38.50 2.00e-57 216.00
IUUC-Ppa-095202 Physcomitrella patens 51.67 1.00e-74 272.00
IUUC-Pfo-096388 Poecilia formosa 91.58 0.00e+00 703.00
IUUC-Pab-097533 Pongo abelii 99.71 0.00e+00 729.00
IUUC-Pop-099348 Populus trichocarpa 49.44 6.00e-90 323.00
IUUC-Pca-100638 Procavia capensis 79.73 2.00e-66 245.00
IUUC-Ppe-101817 Prunus persica 52.19 1.00e-95 342.00
IUUC-Pva-102233 Pteropus vampyrus 99.13 0.00e+00 724.00
IUUC-Pgr-103342 Puccinia graminis 45.14 4.00e-85 308.00
IUUC-Ptt-103836 Puccinia triticina 43.75 1.00e-86 313.00
IUUC-Pte-104387 Pyrenophora teres 40.87 3.00e-65 241.00
IUUC-Pyt-104737 Pyrenophora triticirepentis 39.52 1.00e-66 246.00
IUUC-Rno-105548 Rattus norvegicus 99.13 0.00e+00 725.00
IUUC-Sce-106379 Saccharomyces cerevisiae 41.69 2.00e-76 278.00
IUUC-Sha-107617 Sarcophilus harrisii 97.13 3.00e-146 509.00
IUUC-Sja-107668 Schizosaccharomyces japonicus 45.79 4.00e-79 288.00
IUUC-Spo-108293 Schizosaccharomyces pombe 47.11 3.00e-87 315.00
IUUC-Smo-109611 Selaginella moellendorffii 50.14 4.00e-95 340.00
IUUC-Sit-110436 Setaria italica 49.28 2.00e-91 328.00
IUUC-Sly-111037 Solanum lycopersicum 48.92 2.00e-97 348.00
IUUC-Sbi-114361 Sorghum bicolor 48.35 6.00e-93 333.00
IUUC-Sre-114922 Sporisorium reilianum 40.41 1.00e-65 243.00
IUUC-Tgu-116751 Taeniopygia guttata 96.52 0.00e+00 709.00
IUUC-Tru-117798 Takifugu rubripes 91.88 0.00e+00 686.00
IUUC-Tsy-119523 Tarsius syrichta 100.00 2.00e-168 584.00
IUUC-Tni-120477 Tetraodon nigroviridis 91.93 0.00e+00 685.00
IUUC-Tca-121802 Theobroma cacao 50.70 2.00e-96 345.00
IUUC-Tre-121994 Trichoderma reesei 43.20 3.00e-70 258.00
IUUC-Tvi-122631 Trichoderma virens 42.43 1.00e-68 252.00
IUUC-Tae-124482 Triticum aestivum 50.29 3.00e-92 331.00
IUUC-Tur-126390 Triticum urartu 50.58 1.00e-92 332.00
IUUC-Tme-127152 Tuber melanosporum 47.93 5.00e-80 290.00
IUUC-Tbe-127319 Tupaia belangeri 85.32 2.00e-125 441.00
IUUC-Ttr-129207 Tursiops truncatus 98.84 0.00e+00 716.00
IUUC-Uma-129342 Ustilago maydis 39.94 1.00e-59 223.00
IUUC-Vda-129865 Verticillium dahliae 41.54 7.00e-74 270.00
IUUC-Vpa-130076 Vicugna pacos 89.44 2.00e-163 567.00
IUUC-Vvi-131104 Vitis vinifera 50.72 4.00e-95 340.00
IUUC-Xtr-132917 Xenopus tropicalis 73.85 4.00e-147 513.00
IUUC-Xma-133615 Xiphophorus maculatus 92.75 0.00e+00 697.00
IUUC-Yli-134431 Yarrowia lipolytica 40.48 6.00e-74 270.00
IUUC-Zma-135142 Zea mays 49.86 2.00e-93 335.00
Created Date 25-Jun-2017

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