iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d044432	Zm00001d044432_T015	Zm00001d044432_T015
Zm00001d044432	Zm00001d044432_T012	Zm00001d044432_T012
Zm00001d044432	Zm00001d044432_T003	Zm00001d044432_T003
Zm00001d044432	Zm00001d044432_T006	Zm00001d044432_T006
Zm00001d044432	Zm00001d044432_T004	Zm00001d044432_T004
Zm00001d044432	Zm00001d044432_T008	Zm00001d044432_T008
Zm00001d044432	Zm00001d044432_T016	Zm00001d044432_T016
Zm00001d044432	Zm00001d044432_T009	Zm00001d044432_T009
Zm00001d044432	Zm00001d044432_T010	Zm00001d044432_T010

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-20	74.3	648	674
UBD/Beta-Prp	3.20e-43	150.0	601	758

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf.sd.tllvsGsdDgtikvWD 29
            +t+++f ++  +l+++s D+t++vWD
   Q: 648  LITDVRFsPSmSRLATSSFDKTVRVWD 674
           699*****66799************** PP

UBD/Beta-Prp

   S: 91   kghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl.ktgkllrtltggh 179
           ++  ++v++++fs++g+ l++G+hd+ + +w +++ +  + +l++h+ +++ v+++p+ + l+++s D+tvr+Wd  +t+  lrt+tg h
   Q: 601  RASAAKVVCCHFSADGKLLATGGHDKKVTLWCTDSLKPKS-FLEEHSFLITDVRFSPSMSRLATSSFDKTVRVWDAdNTDYSLRTFTG-H 688
           4556677777777777777777777777777777777777.77777777777777777777777777777777777666667777777.7 PP
   S: 180  tdsvyslsfdsng.kelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiri 248
             sv sl+f++n+   + s++ dg v+ w++ +g+c+  ++  ++  +++rf p++  ++ ++s++ i+i
   Q: 689  SASVMSLDFHPNKeDMICSCDGDGEVRSWSINNGSCLTCVKVFKAGATQMRFQPRKGKYLAAASEKAIYI 758
           7777777777777344557777777777777777777777777777777777766555555556666666 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSQTNWEADK MLDVYIYDYF MKRNLQATAK AFQAEGKVSS DPVAIDAPGG FLFEWWSVFW 60
DIFIARTNEK HSDVAASYIE TQLMKAREQQ QPQTPQQRQQ QPQHIQMQQM LLQRAVHQQQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GTACTCCTGT GTCTTGTCCC ACTCCTCCCG TCTCTATTCC CCAATTGGCC CTCGCCTCCA 60
TTACCTTCCC CGTCCCCCTC GTACATTTCG ACATCCCCTC CCCCCCGACT CTCCCGTCCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0175--Coiled coil
KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF00400--WD40

SMART

SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000855	Aegilops tauschii	82.31	0.00e+00	1020.00
IUUC-Atr-002973	Amborella trichopoda	63.83	0.00e+00	712.00
IUUC-Aly-006446	Arabidopsis lyrata	58.30	0.00e+00	725.00
IUUC-Ath-006594	Arabidopsis thaliana	56.16	0.00e+00	711.00
IUUC-Bdi-015034	Brachypodium distachyon	82.71	0.00e+00	1068.00
IUUC-Bol-015720	Brassica oleracea	58.95	0.00e+00	707.00
IUUC-Bra-017481	Brassica rapa	58.39	0.00e+00	729.00
IUUC-Hvu-047773	Hordeum vulgare	87.41	0.00e+00	676.00
IUUC-Lpe-051536	Leersia perrieri	82.15	0.00e+00	1059.00
IUUC-Mtr-058613	Medicago truncatula	59.40	0.00e+00	738.00
IUUC-Mac-064770	Musa acuminata	61.14	0.00e+00	754.00
IUUC-Oba-075753	Oryza barthii	76.61	0.00e+00	847.00
IUUC-Obr-076415	Oryza brachyantha	83.15	0.00e+00	1195.00
IUUC-Ogl-077031	Oryza glaberrima	83.85	0.00e+00	1018.00
IUUC-Ogu-078070	Oryza glumaepatula	74.68	0.00e+00	890.00
IUUC-Oin-079642	Oryza indica	83.98	0.00e+00	1019.00
IUUC-Olo-080338	Oryza longistaminata	83.45	0.00e+00	906.00
IUUC-Ome-081901	Oryza meridionalis	83.31	0.00e+00	993.00
IUUC-Oni-082450	Oryza nivara	76.50	0.00e+00	848.00
IUUC-Oru-085189	Oryza rufipogon	75.32	0.00e+00	928.00
IUUC-Osa-085738	Oryza sativa	83.93	0.00e+00	1181.00
IUUC-Pop-098994	Populus trichocarpa	62.83	0.00e+00	775.00
IUUC-Ppe-102018	Prunus persica	60.39	0.00e+00	749.00
IUUC-Smo-109607	Selaginella moellendorffii	50.78	7.00e-173	600.00
IUUC-Sit-109866	Setaria italica	92.34	0.00e+00	1130.00
IUUC-Sly-110921	Solanum lycopersicum	61.75	0.00e+00	728.00
IUUC-Sbi-113848	Sorghum bicolor	94.65	0.00e+00	1318.00
IUUC-Tae-125267	Triticum aestivum	82.95	0.00e+00	1051.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence