iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129761

Ensembl Protein ID

EGY23211

UniProt Accession

G2X3R2; G2X3R2_VERDV

Genbank Protein ID

EGY23211.1

Protein Name

Transcription initiation factor TFIID subunit 5

Genbank Nucleotide ID

DS572702

Gene Name

VDAG_04649

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_04649	EGY23211	EGY23211

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.30e-31	106.4	543	583
UBD/Beta-Prp	6.90e-54	182.1	387	662

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGs..dDgtikvWDlrtgvllk 37
           gH+ s+++la+ ++ t+l ++s   D++i++W++ tg +++
   Q: 543  GHNTSISALAWhPNgTYLFTASdeTDKSIRMWSVVTGGCVR 583
           8999********777*******8899************986 PP

UBD/Beta-Prp

   S: 13   itcvkfspdksllatgsrdgtikvwdvttgkl.............lrslsgheae......................vtavkfspdgkilvtgseDrtikv 78
           ++c++fs+d +l+a+g +d+ i+vw ++ + l              r+l gh+++                           ++  +k+l+++s D+++++
   Q: 387  VSCLDFSKDHELVAAGTTDSYIRVWTLDGKALkskaahdldfkanNRKLIGHSGPvydvafsdaiasgnhtpfahqgKGNGAIDTGAKLLLSASADGHVRL 487
           789**************************99988888888888888888888888888888888888777777776655666666777************* PP
   S: 79   wdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGs..lDrtvrlWdlktgkllrtltg 177
           w+l+  +c+ ++kgh+  v+ +s+sp g+++vsG++d+t+r+w  ++ + ++ +l gh+ +++ +++hp+g +l+++s  +D+ +r+W++ tg ++r +tg
   Q: 488  WSLDLWQCLCIYKGHDGPVMRVSWSPHGHYFVSGGWDKTARLWMQDHASAMR-LLVGHNTSISALAWHPNGTYLFTASdeTDKSIRMWSVVTGGCVRVFTG 587
           *******************************************999999999.************************95569******************9 PP
   S: 178  ghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnght.dnvksvrfspnderlvsgssDgsiriWdlr 252
            h++++ sl+  +ngk l+sg++ g + +wd+++g+ +++ +gh    ++s++fs +++ lvsg++Dg++r+Wd++
   Q: 588  -HNEYISSLTCAPNGKILASGDTGGNIMFWDIEKGTRIKRSRGHAkGGIWSMDFSVESNVLVSGGQDGTVRLWDVE 662
           .******************************************97478**************************86 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MSGAGAPGGP PGGNGPPSAG PQQSNFTPSQ QPVTPGTAVA ATAAPAAAAP AAAQPPMSNQ 60
NLNQIVTDYL LKRGFTRTEN IFRQESSHLG PDGRPIQAKV DDLGPQKYRK AFNMLRDWVP 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGGGCG CTGGAGCCCC CGGCGGTCCG CCAGGAGGCA ACGGGCCCCC CAGCGCTGGA 60
CCGCAACAGA GCAACTTCAC GCCGTCGCAG CAACCTGTAA CACCAGGCAC AGCCGTCGCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR006594--LisH
IPR007582--TFIID_NTD2
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08513--LisH
PF04494--TFIID_NTD2
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0003743--F:translation initiation factor activity

KEGG

vda:VDAG_04649

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000261	Aegilops tauschii	44.32	3.00e-42	165.00
IUUC-Aml-001607	Ailuropoda melanoleuca	28.47	7.00e-70	256.00
IUUC-Atr-003136	Amborella trichopoda	34.47	5.00e-52	197.00
IUUC-Apl-004193	Anas platyrhynchos	27.78	2.00e-65	241.00
IUUC-Aca-004522	Anolis carolinensis	27.66	2.00e-66	245.00
IUUC-Aly-006476	Arabidopsis lyrata	27.38	1.00e-64	239.00
IUUC-Ath-006587	Arabidopsis thaliana	27.22	1.00e-62	233.00
IUUC-Ago-007736	Ashbya gossypii	39.58	1.00e-83	302.00
IUUC-Acl-008092	Aspergillus clavatus	47.89	0.00e+00	637.00
IUUC-Afl-008659	Aspergillus flavus	47.63	0.00e+00	639.00
IUUC-Afu-008902	Aspergillus fumigatus	47.91	2.00e-180	624.00
IUUC-Ani-009462	Aspergillus nidulans	48.01	7.00e-157	545.00
IUUC-Aor-010083	Aspergillus oryzae	47.49	0.00e+00	637.00
IUUC-Ate-010271	Aspergillus terreus	47.03	0.00e+00	627.00
IUUC-Ame-010721	Astyanax mexicanus	33.26	9.00e-62	229.00
IUUC-Bgr-012257	Blumeria graminis	49.44	0.00e+00	660.00
IUUC-Bta-013539	Bos taurus	28.76	6.00e-69	253.00
IUUC-Bci-013737	Botrytis cinerea	52.59	0.00e+00	752.00
IUUC-Bdi-015041	Brachypodium distachyon	31.91	2.00e-45	175.00
IUUC-Bol-016198	Brassica oleracea	27.32	6.00e-64	236.00
IUUC-Bra-017660	Brassica rapa	26.90	5.00e-63	233.00
IUUC-Cel-018451	Caenorhabditis elegans	21.98	1.00e-33	135.00
IUUC-Cja-018881	Callithrix jacchus	28.57	4.00e-69	254.00
IUUC-Cfa-020056	Canis familiaris	28.57	5.00e-69	254.00
IUUC-Cpo-021454	Cavia porcellus	27.71	2.00e-70	258.00
IUUC-Cre-022736	Chlamydomonas reinhardtii	38.54	2.00e-35	141.00
IUUC-Csa-023045	Chlorocebus sabaeus	28.80	5.00e-68	250.00
IUUC-Cho-024284	Choloepus hoffmanni	36.36	1.00e-48	186.00
IUUC-Cin-025457	Ciona intestinalis	33.94	8.00e-48	181.00
IUUC-Csv-025882	Ciona savignyi	31.06	2.00e-54	205.00
IUUC-Cgl-026392	Colletotrichum gloeosporioides	74.23	0.00e+00	1107.00
IUUC-Cne-026876	Cryptococcus neoformans	29.38	1.00e-71	263.00
IUUC-Cme-027302	Cyanidioschyzon merolae	34.84	7.00e-46	177.00
IUUC-Dre-027980	Danio rerio	33.04	3.00e-63	234.00
IUUC-Dno-028863	Dasypus novemcinctus	28.49	5.00e-69	254.00
IUUC-Dor-030561	Dipodomys ordii	28.57	4.00e-69	254.00
IUUC-Dse-031547	Dothistroma septosporum	41.21	2.00e-148	517.00
IUUC-Dme-031917	Drosophila melanogaster	28.64	2.00e-49	188.00
IUUC-Ete-032712	Echinops telfairi	38.43	1.00e-39	156.00
IUUC-Eca-033927	Equus caballus	28.53	8.00e-70	256.00
IUUC-Eeu-034449	Erinaceus europaeus	36.26	3.00e-59	221.00
IUUC-Fca-036325	Felis catus	28.57	5.00e-69	254.00
IUUC-Fal-036604	Ficedula albicollis	28.27	4.00e-63	234.00
IUUC-Fox-038049	Fusarium oxysporum	67.66	0.00e+00	950.00
IUUC-Fso-038302	Fusarium solani	66.01	0.00e+00	933.00
IUUC-Gmo-038832	Gadus morhua	33.33	9.00e-62	229.00
IUUC-Ggr-039878	Gaeumannomyces graminis	65.65	0.00e+00	874.00
IUUC-Gga-041147	Gallus gallus	27.88	1.00e-67	249.00
IUUC-Gac-041373	Gasterosteus aculeatus	33.78	5.00e-64	237.00
IUUC-Gma-043230	Glycine max	27.56	6.00e-70	256.00
IUUC-Ggo-044568	Gorilla gorilla	38.33	4.00e-40	157.00
IUUC-Hsa-045971	Homo sapiens	28.57	4.00e-69	254.00
IUUC-Hvu-047695	Hordeum vulgare	32.29	2.00e-46	177.00
IUUC-Itr-048400	Ictidomys tridecemlineatus	28.57	2.00e-69	255.00
IUUC-Kpa-049402	Komagataella pastoris	31.67	2.00e-98	351.00
IUUC-Lch-049526	Latimeria chalumnae	30.96	2.00e-53	202.00
IUUC-Lpe-051560	Leersia perrieri	37.24	2.00e-50	191.00
IUUC-Loc-052882	Lepisosteus oculatus	33.11	5.00e-63	234.00
IUUC-Lma-053212	Leptosphaeria maculans	42.90	2.00e-138	484.00
IUUC-Laf-053859	Loxodonta africana	27.99	5.00e-69	254.00
IUUC-Mcc-054957	Macaca mulatta	33.04	2.00e-61	227.00
IUUC-Meu-056182	Macropus eugenii	38.59	2.00e-39	155.00
IUUC-Mor-057024	Magnaporthe oryzae	65.97	0.00e+00	853.00
IUUC-Mpo-057520	Magnaporthe poae	62.39	0.00e+00	868.00
IUUC-Mtr-058754	Medicago truncatula	27.70	3.00e-70	258.00
IUUC-Mla-058881	Melampsora laricipopulina	32.15	1.00e-58	219.00
IUUC-Mga-059776	Meleagris gallopavo	27.71	7.00e-68	249.00
IUUC-Mvi-060208	Microbotryum violaceum	28.48	6.00e-66	243.00
IUUC-Mmr-061783	Microcebus murinus	33.04	2.00e-61	227.00
IUUC-Mdo-062856	Monodelphis domestica	28.35	2.00e-68	251.00
IUUC-Mmu-064218	Mus musculus	28.57	3.00e-69	254.00
IUUC-Mac-064886	Musa acuminata	35.27	5.00e-44	171.00
IUUC-Mpu-065735	Mustela putorius furo	28.57	3.00e-69	254.00
IUUC-Mlu-067544	Myotis lucifugus	28.45	7.00e-69	253.00
IUUC-Nfi-068502	Neosartorya fischeri	48.32	0.00e+00	634.00
IUUC-Ncr-068891	Neurospora crassa	68.12	0.00e+00	901.00
IUUC-Nle-069389	Nomascus leucogenys	28.57	4.00e-69	254.00
IUUC-Opr-071042	Ochotona princeps	31.68	2.00e-52	199.00
IUUC-Ont-071455	Oreochromis niloticus	34.00	1.00e-65	242.00
IUUC-Oan-073181	Ornithorhynchus anatinus	27.78	2.00e-66	244.00
IUUC-Ocu-073758	Oryctolagus cuniculus	27.79	4.00e-70	257.00
IUUC-Oba-075832	Oryza barthii	35.65	4.00e-50	191.00
IUUC-Obr-076111	Oryza brachyantha	32.64	4.00e-54	204.00
IUUC-Ogl-077914	Oryza glaberrima	33.77	4.00e-42	164.00
IUUC-Ogu-078190	Oryza glumaepatula	35.65	3.00e-50	191.00
IUUC-Oin-079473	Oryza indica	35.17	6.00e-45	173.00
IUUC-Olo-080557	Oryza longistaminata	36.19	3.00e-45	174.00
IUUC-Ome-081831	Oryza meridionalis	44.07	4.00e-42	164.00
IUUC-Oni-082431	Oryza nivara	35.65	1.00e-50	192.00
IUUC-Opu-083239	Oryza punctata	44.07	6.00e-42	163.00
IUUC-Oru-085154	Oryza rufipogon	35.65	8.00e-50	189.00
IUUC-Osa-086189	Oryza sativa	35.17	7.00e-45	173.00
IUUC-Ola-086574	Oryzias latipes	32.65	3.00e-63	234.00
IUUC-Olu-087616	Ostreococcus lucimarinus	38.19	1.00e-54	205.00
IUUC-Oga-088827	Otolemur garnettii	28.57	5.00e-69	254.00
IUUC-Oar-089648	Ovis aries	28.76	5.00e-69	253.00
IUUC-Ptr-091195	Pan troglodytes	28.57	3.00e-69	254.00
IUUC-Pan-091978	Papio anubis	28.76	7.00e-69	253.00
IUUC-Psi-093598	Pelodiscus sinensis	28.04	5.00e-62	230.00
IUUC-Pma-094593	Petromyzon marinus	34.15	1.00e-36	145.00
IUUC-Pno-094823	Phaeosphaeria nodorum	41.35	4.00e-137	479.00
IUUC-Ppa-095455	Physcomitrella patens	27.27	4.00e-60	224.00
IUUC-Pfo-097120	Poecilia formosa	33.56	4.00e-64	237.00
IUUC-Pab-098771	Pongo abelii	28.57	4.00e-69	254.00
IUUC-Pop-099542	Populus trichocarpa	27.93	8.00e-67	246.00
IUUC-Pca-100727	Procavia capensis	38.33	2.00e-41	161.00
IUUC-Ppe-101686	Prunus persica	27.26	5.00e-64	237.00
IUUC-Pva-103211	Pteropus vampyrus	33.44	5.00e-39	154.00
IUUC-Pgr-103603	Puccinia graminis	27.12	8.00e-62	230.00
IUUC-Ptt-103995	Puccinia triticina	34.62	7.00e-50	191.00
IUUC-Pte-104359	Pyrenophora teres	43.45	4.00e-149	520.00
IUUC-Pyt-104523	Pyrenophora triticirepentis	44.62	2.00e-146	511.00
IUUC-Rno-105064	Rattus norvegicus	27.99	6.00e-69	253.00
IUUC-Sce-106186	Saccharomyces cerevisiae	30.66	3.00e-97	347.00
IUUC-Sha-106582	Sarcophilus harrisii	28.63	1.00e-67	249.00
IUUC-Sja-107683	Schizosaccharomyces japonicus	31.21	1.00e-100	358.00
IUUC-Spo-108142	Schizosaccharomyces pombe	33.29	3.00e-103	367.00
IUUC-Ssl-108456	Sclerotinia sclerotiorum	51.70	0.00e+00	716.00
IUUC-Smo-109111	Selaginella moellendorffii	36.76	1.00e-53	202.00
IUUC-Sit-109804	Setaria italica	31.59	2.00e-47	181.00
IUUC-Sly-111693	Solanum lycopersicum	27.73	1.00e-65	242.00
IUUC-Sar-113381	Sorex araneus	34.85	4.00e-44	171.00
IUUC-Sbi-114849	Sorghum bicolor	31.65	2.00e-45	175.00
IUUC-Sre-114945	Sporisorium reilianum	31.59	1.00e-57	216.00
IUUC-Ssc-115582	Sus scrofa	32.74	3.00e-60	224.00
IUUC-Tgu-116899	Taeniopygia guttata	27.63	2.00e-65	241.00
IUUC-Tru-118011	Takifugu rubripes	33.78	1.00e-63	236.00
IUUC-Tsy-119622	Tarsius syrichta	32.97	9.00e-24	103.00
IUUC-Tni-120598	Tetraodon nigroviridis	33.85	3.00e-64	238.00
IUUC-Tca-121247	Theobroma cacao	30.75	5.00e-54	204.00
IUUC-Tre-121949	Trichoderma reesei	63.96	0.00e+00	882.00
IUUC-Tvi-122626	Trichoderma virens	62.11	0.00e+00	920.00
IUUC-Tae-123335	Triticum aestivum	31.77	3.00e-48	184.00
IUUC-Tur-126005	Triticum urartu	29.95	5.00e-42	164.00
IUUC-Tme-126904	Tuber melanosporum	36.55	2.00e-115	407.00
IUUC-Tbe-127254	Tupaia belangeri	25.18	3.00e-51	194.00
IUUC-Ttr-128544	Tursiops truncatus	28.49	4.00e-69	254.00
IUUC-Uma-129379	Ustilago maydis	32.26	3.00e-58	218.00
IUUC-Vpa-130485	Vicugna pacos	28.57	6.00e-69	253.00
IUUC-Vvi-131171	Vitis vinifera	26.23	2.00e-65	241.00
IUUC-Xtr-132241	Xenopus tropicalis	37.24	8.00e-39	153.00
IUUC-Xma-133583	Xiphophorus maculatus	33.56	4.00e-64	237.00
IUUC-Yli-134446	Yarrowia lipolytica	32.02	7.00e-107	379.00
IUUC-Zma-135722	Zea mays	31.65	6.00e-46	177.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence