iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d047897	Zm00001d047897_T016	Zm00001d047897_T016
Zm00001d047897	Zm00001d047897_T031	Zm00001d047897_T031
Zm00001d047897	Zm00001d047897_T013	Zm00001d047897_T013
Zm00001d047897	Zm00001d047897_T005	Zm00001d047897_T005
Zm00001d047897	Zm00001d047897_T023	Zm00001d047897_T023

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	2.60e-19	70.5	456	491
UBD/Beta-Prp	9.00e-41	142.0	383	623

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDlrtg 33
           H ++v+++af  ++  l +++++dD+tikvW+ ++g
   Q: 456  HIGGVNDIAFahPNkQLcIITCGDDKTIKVWEATSG 491
           9999*******97653359************98876 PP

UBD/Beta-Prp

   S: 72   eD....rtikvwdlstgkcvhtlkghedsvls...lsfspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdg.n 150
           +D    r+ kvwdls+++++   +  +d ++s   + +sp+g  + ++ +  +++++  + g  +++   +++   gv+ ++  hp++  
   Q: 383  KDrlvvRNFKVWDLSKCTMILQASLVKDPAVSvnrIIWSPDGTLFGVAYSRHIVQIYSYNGGDDIRQhleIDAHIGGVNDIAFAHPNKqL 472
           665555788******9999988886666666644488********99999********99999998888899999*************88 PP
   S: 151  llvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlv 238
           +++++++D+t+++W   +g    t++g h+ +vys+   +++n +++ s +ldg++k w + +    + + +   + + ++ s ++ rl 
   Q: 473  CIITCGDDKTIKVWEATSGAKQFTFEG-HEAPVYSVCphYKENIQFIFSTALDGKIKAWLYDNMGSRVDYDAPGHWCTTMAYSADGSRLF 561
           999***********************9.********98899999******************9999************************ PP
   S: 239  sgs..sDgsiri..Wdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvniwklkk 296
           s++  +Dg   +  W+   g + +t+q+ +++++ v  ++ ++n +++++++  ++iw++++
   Q: 562  SCGtsKDGESHLveWNESEGAVKRTYQGFRKRSMGVVQFDTTRNRFLAAGDEFMIKIWDMDS 623
           99888888877778****************999999999********************976 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLDEEK FKETVHKLEQ ESGFYFNMKY FEDEVVNGNW DEVERYLGGF 60
TKVDDNRYSM KIFFEIRKQK YLEALDKHDR SKAVEILVKD LKVFASFNEE LFKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCAGGCA GACCTGGACC TGCGCTAGAC CTCAAAGACT CGATCGCACC GCATCTTCTC 60
TCTCTGCTCC TCGTTCGCTT CGTCGCCGGC GACCCCGCCG CCAGCTTCCC CTTCCGCTGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR027728--Topless_fam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0006355--P:regulation of transcription, DNA-templated

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005472	Arabidopsis lyrata	77.65	0.00e+00	1722.00
IUUC-Ath-007640	Arabidopsis thaliana	77.04	0.00e+00	1731.00
IUUC-Bol-015359	Brassica oleracea	76.69	0.00e+00	1721.00
IUUC-Bra-016893	Brassica rapa	76.60	0.00e+00	1714.00
IUUC-Gma-043911	Glycine max	79.72	0.00e+00	1795.00
IUUC-Lpe-051514	Leersia perrieri	89.05	0.00e+00	1965.00
IUUC-Mtr-058037	Medicago truncatula	80.09	0.00e+00	1762.00
IUUC-Mac-065382	Musa acuminata	81.28	0.00e+00	1870.00
IUUC-Oba-075912	Oryza barthii	91.62	0.00e+00	2031.00
IUUC-Obr-076921	Oryza brachyantha	91.64	0.00e+00	2060.00
IUUC-Ogl-077334	Oryza glaberrima	91.56	0.00e+00	2053.00
IUUC-Ogu-078494	Oryza glumaepatula	91.56	0.00e+00	2053.00
IUUC-Oin-079720	Oryza indica	90.46	0.00e+00	2052.00
IUUC-Olo-081034	Oryza longistaminata	88.32	0.00e+00	2019.00
IUUC-Ome-081778	Oryza meridionalis	91.65	0.00e+00	2060.00
IUUC-Oni-082412	Oryza nivara	91.30	0.00e+00	2031.00
IUUC-Opu-083406	Oryza punctata	89.76	0.00e+00	1990.00
IUUC-Oru-084328	Oryza rufipogon	91.44	0.00e+00	2041.00
IUUC-Osa-085765	Oryza sativa	91.56	0.00e+00	2053.00
IUUC-Pop-098876	Populus trichocarpa	77.70	0.00e+00	1770.00
IUUC-Ppe-101370	Prunus persica	80.86	0.00e+00	1847.00
IUUC-Sit-110288	Setaria italica	94.88	0.00e+00	2109.00
IUUC-Sly-111739	Solanum lycopersicum	78.38	0.00e+00	1778.00
IUUC-Stu-112409	Solanum tuberosum	69.67	0.00e+00	1574.00
IUUC-Sbi-114078	Sorghum bicolor	95.93	0.00e+00	2149.00
IUUC-Tca-121628	Theobroma cacao	79.20	0.00e+00	1791.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence