iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Zm00001d049817	Zm00001d049817_T006	Zm00001d049817_T006
Zm00001d049817	Zm00001d049817_T002	Zm00001d049817_T002
Zm00001d049817	Zm00001d049817_T004	Zm00001d049817_T004
Zm00001d049817	Zm00001d049817_T003	Zm00001d049817_T003

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.20e-22	81.0	866	894

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 5    svtclaf..sdtllvsGsdDgtikvWDlr 31
           +v++ ++  +++ lv+ s+Dg++ +WD++
   Q: 866  GVNATQWlhNEPVLVTVSGDGSVGMWDVT 894
           59******655****************97 PP

Organism

Zea mays

Protein Sequence
(Fasta)

MPEPQAILPL RALPPDAPLP FPVPAPFHPQ APGPGGTAPA TPPNPTPPQP LTPAAPPSSS 60
STRPPHPWEI SARAWLESFP DGRPPTEPEV DAYIDVHRPE LPSLPRSQLH QRLLALRGDQ 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGCACCCCA AAACGGCAAA ACCCATCAGG TCCCCGCCAC ACCTCGATAC TCTAACTTCG 60
GCCGCCGCCG CCGCCGCCGC CGCCGCGAAT GCCGGAGCCC CAGGCCATCC TCCCGCTGCG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000846	Aegilops tauschii	75.08	0.00e+00	931.00
IUUC-Atr-002668	Amborella trichopoda	55.36	0.00e+00	629.00
IUUC-Bdi-014501	Brachypodium distachyon	72.02	0.00e+00	1199.00
IUUC-Lpe-051545	Leersia perrieri	68.45	0.00e+00	826.00
IUUC-Mac-064887	Musa acuminata	75.09	1.00e-116	412.00
IUUC-Oba-074978	Oryza barthii	67.25	0.00e+00	791.00
IUUC-Obr-076372	Oryza brachyantha	71.11	0.00e+00	1034.00
IUUC-Ogl-076950	Oryza glaberrima	73.90	0.00e+00	1216.00
IUUC-Ogu-078500	Oryza glumaepatula	58.10	0.00e+00	894.00
IUUC-Oin-079488	Oryza indica	81.91	0.00e+00	840.00
IUUC-Olo-080491	Oryza longistaminata	63.22	0.00e+00	850.00
IUUC-Oni-082022	Oryza nivara	57.77	0.00e+00	886.00
IUUC-Opu-083211	Oryza punctata	72.83	0.00e+00	1197.00
IUUC-Oru-085018	Oryza rufipogon	76.46	0.00e+00	633.00
IUUC-Osa-085998	Oryza sativa	73.90	0.00e+00	1217.00
IUUC-Ppa-095605	Physcomitrella patens	46.68	3.00e-131	462.00
IUUC-Sja-107870	Schizosaccharomyces japonicus	23.63	5.00e-15	75.90
IUUC-Spo-108270	Schizosaccharomyces pombe	22.94	6.00e-10	58.90
IUUC-Smo-109202	Selaginella moellendorffii	51.33	2.00e-130	458.00
IUUC-Sit-110580	Setaria italica	77.65	0.00e+00	1263.00
IUUC-Sbi-114718	Sorghum bicolor	95.02	0.00e+00	1170.00
IUUC-Tae-125757	Triticum aestivum	74.39	0.00e+00	1198.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence