iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.40e-11	44.0	297	354

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 2    kvClvCgeggedek..slveCekCrewfHpaClkls....veeelpnsekwiCpkCrs 53
           ++C+vC + ++d++   +v+C+ C++w+H +C ++s    ++ ++ ++ ++ C+ Cr 
   Q: 297  NYCPVCLKVYRDSEatPMVCCDFCQRWVHCQCDGISdekyMQFQVDGNLQYKCSTCRG 354
           79**********99878888888*************77776667777777******85 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MAFHVACPIT CRKICFCVLG FSRNLHGNEV KDVYLKEIHS LQEFVRNPWD AEVSKDGTVQ 60
IHVPKLAVFD TGPRIAARNV GVGSDSAMEV VAASSNLVPA KRTLVLQKKA VEVYAANDCS 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCTTTC ACGTAGCTTG TCCAATTACA TGGTATGTTT TTTTTTCTTT CTTTTGGCGC 60
CTCCTTTACT CGTTGGCTTG TTTGTTTTTA CTAATCGAAT TGTTCTAATT TGGGGGTTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS01359--ZF_PHD_1
PS50016--ZF_PHD_2
PS50089--ZF_RING_2

SMART

SM00249--PHD

Gene Ontology

GO:0009506--C:plasmodesma
GO:0008270--F:zinc ion binding

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005651	Arabidopsis lyrata	90.95	0.00e+00	1218.00
IUUC-Bol-015472	Brassica oleracea	74.07	0.00e+00	874.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence