iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress	GXD
DNA & RNA Element
miRTarBase	microRNA	TRANSFAC	miRNAMap
RAID2
Protein-protein Interaction
IID	iRefIndex	PINA	HINT
Post-translational Modifications (PTMs)
dbPAF	PhosphositePlus	dbPTM	PHOSIDA
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.40e-17	64.1	124	157

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgv 34
           gH+++v+c+++ +d + l s+sdD+ i   +++t++
   Q: 124  GHENRVNCIQWhQDnDCLYSCSDDKYIV--EWSTQT 157
           8***********66699********998..444444 PP

Organism

Mus musculus

Protein Sequence
(Fasta)

MAAGGGGSYD PLAPAGVPCA FSPDSQAYFA LASSDGQLRV WETANNRLHQ EYVPSAHLSG 60
TCTCLAWAPA RLQAKESHQR KKRKSEVTGT KDQADLLALG TAVGSILLYS TVRGELHSKL 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCTGCGCCC GGGCGAACAC GTGGCTGCCG CGGAGCCAGA GCAGCAATGG CGGCCGGAGG 60
CGGCGGTAGC TACGACCCCT TGGCCCCGGC GGGGGTCCCC TGCGCCTTCT CGCCGGACAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1017--Isopeptide bond
KW-0539--Nucleus
KW-0597--Phosphoprotein
KW-1185--Reference proteome
KW-0677--Repeat
KW-0832--Ubl conjugation
KW-0853--WD repeat

Interpro

IPR007148--SSU_processome_Utp12
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF04003--Utp12
PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0001650--C:fibrillar center
GO:0005730--C:nucleolus
GO:0003723--F:RNA binding

KEGG

mmu:72515

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aml-001865	Ailuropoda melanoleuca	84.93	0.00e+00	1055.00
IUUC-Atr-002533	Amborella trichopoda	20.48	2.00e-23	103.00
IUUC-Apl-003242	Anas platyrhynchos	71.51	0.00e+00	764.00
IUUC-Aca-004607	Anolis carolinensis	67.56	0.00e+00	813.00
IUUC-Aly-006074	Arabidopsis lyrata	25.89	2.00e-16	80.90
IUUC-Ath-007222	Arabidopsis thaliana	25.89	6.00e-16	79.30
IUUC-Ame-011014	Astyanax mexicanus	54.53	6.00e-171	594.00
IUUC-Bta-012605	Bos taurus	87.81	0.00e+00	1053.00
IUUC-Bdi-014072	Brachypodium distachyon	20.52	4.00e-21	96.70
IUUC-Bol-016255	Brassica oleracea	26.69	5.00e-22	99.80
IUUC-Bra-016850	Brassica rapa	27.03	3.00e-23	103.00
IUUC-Cja-019620	Callithrix jacchus	87.65	0.00e+00	1053.00
IUUC-Cfa-020520	Canis familiaris	87.31	0.00e+00	1050.00
IUUC-Cpo-022456	Cavia porcellus	86.69	0.00e+00	1035.00
IUUC-Cho-024726	Choloepus hoffmanni	85.25	0.00e+00	981.00
IUUC-Cin-025761	Ciona intestinalis	35.73	5.00e-96	345.00
IUUC-Dre-028051	Danio rerio	50.86	2.00e-177	616.00
IUUC-Dno-030031	Dasypus novemcinctus	86.64	0.00e+00	1035.00
IUUC-Dme-031653	Drosophila melanogaster	26.43	8.00e-41	161.00
IUUC-Ete-032863	Echinops telfairi	68.75	7.00e-86	311.00
IUUC-Eca-033243	Equus caballus	86.58	0.00e+00	883.00
IUUC-Eeu-034970	Erinaceus europaeus	81.92	0.00e+00	738.00
IUUC-Fca-036009	Felis catus	87.46	0.00e+00	1038.00
IUUC-Fal-037264	Ficedula albicollis	70.36	0.00e+00	746.00
IUUC-Gmo-039124	Gadus morhua	55.93	2.00e-177	615.00
IUUC-Gga-040862	Gallus gallus	69.80	0.00e+00	815.00
IUUC-Gac-041468	Gasterosteus aculeatus	55.08	0.00e+00	642.00
IUUC-Gma-042795	Glycine max	23.25	4.00e-13	70.10
IUUC-Ggo-044432	Gorilla gorilla	87.98	0.00e+00	1058.00
IUUC-Hsa-047036	Homo sapiens	87.98	0.00e+00	1057.00
IUUC-Itr-048644	Ictidomys tridecemlineatus	89.32	0.00e+00	1072.00
IUUC-Lch-049553	Latimeria chalumnae	64.56	0.00e+00	716.00
IUUC-Laf-053462	Loxodonta africana	85.31	0.00e+00	1055.00
IUUC-Mcc-055239	Macaca mulatta	88.17	0.00e+00	1056.00
IUUC-Mtr-057977	Medicago truncatula	21.27	4.00e-18	86.70
IUUC-Mga-060079	Meleagris gallopavo	71.89	0.00e+00	750.00
IUUC-Mmr-061472	Microcebus murinus	85.81	0.00e+00	1038.00
IUUC-Mdo-061972	Monodelphis domestica	77.54	0.00e+00	950.00
IUUC-Mac-065064	Musa acuminata	24.09	3.00e-17	83.20
IUUC-Mpu-066877	Mustela putorius furo	86.81	0.00e+00	1046.00
IUUC-Mlu-067476	Myotis lucifugus	83.78	0.00e+00	1001.00
IUUC-Nle-069119	Nomascus leucogenys	87.98	0.00e+00	1054.00
IUUC-Ont-072093	Oreochromis niloticus	52.83	0.00e+00	675.00
IUUC-Oan-072944	Ornithorhynchus anatinus	69.08	0.00e+00	805.00
IUUC-Ocu-074472	Oryctolagus cuniculus	86.96	0.00e+00	1021.00
IUUC-Oba-075009	Oryza barthii	20.96	1.00e-16	81.60
IUUC-Ogl-077189	Oryza glaberrima	19.97	1.00e-16	81.30
IUUC-Oin-079064	Oryza indica	20.96	2.00e-16	81.30
IUUC-Opu-083604	Oryza punctata	20.58	7.00e-15	75.90
IUUC-Oru-084620	Oryza rufipogon	20.91	1.00e-16	81.30
IUUC-Osa-085345	Oryza sativa	20.91	1.00e-16	82.00
IUUC-Ola-086626	Oryzias latipes	54.18	0.00e+00	667.00
IUUC-Oga-087911	Otolemur garnettii	86.32	0.00e+00	1026.00
IUUC-Ptr-091603	Pan troglodytes	88.15	0.00e+00	1058.00
IUUC-Pan-092569	Papio anubis	88.17	0.00e+00	1056.00
IUUC-Pma-094287	Petromyzon marinus	52.48	2.00e-180	625.00
IUUC-Ppa-095327	Physcomitrella patens	26.09	4.00e-36	146.00
IUUC-Pfo-097292	Poecilia formosa	54.84	0.00e+00	630.00
IUUC-Pab-097878	Pongo abelii	88.14	0.00e+00	1041.00
IUUC-Pop-099418	Populus trichocarpa	22.56	2.00e-19	90.90
IUUC-Pca-100941	Procavia capensis	79.86	0.00e+00	927.00
IUUC-Ppe-101779	Prunus persica	22.15	7.00e-22	99.00
IUUC-Pva-102493	Pteropus vampyrus	78.89	0.00e+00	939.00
IUUC-Rno-105084	Rattus norvegicus	92.14	0.00e+00	1100.00
IUUC-Sha-107486	Sarcophilus harrisii	76.67	0.00e+00	939.00
IUUC-Smo-108825	Selaginella moellendorffii	22.84	8.00e-20	92.00
IUUC-Sit-110825	Setaria italica	22.47	6.00e-23	102.00
IUUC-Sly-111365	Solanum lycopersicum	22.35	6.00e-18	85.90
IUUC-Stu-112812	Solanum tuberosum	22.40	2.00e-17	84.30
IUUC-Sar-113326	Sorex araneus	88.75	1.00e-130	459.00
IUUC-Sbi-114426	Sorghum bicolor	21.35	2.00e-24	107.00
IUUC-Tgu-116726	Taeniopygia guttata	68.31	0.00e+00	807.00
IUUC-Tru-117848	Takifugu rubripes	54.21	0.00e+00	635.00
IUUC-Tsy-119091	Tarsius syrichta	60.62	1.00e-124	440.00
IUUC-Tni-120591	Tetraodon nigroviridis	54.91	0.00e+00	640.00
IUUC-Tca-121576	Theobroma cacao	25.59	7.00e-17	82.40
IUUC-Tae-125648	Triticum aestivum	21.74	1.00e-19	91.70
IUUC-Tbe-127832	Tupaia belangeri	86.45	0.00e+00	892.00
IUUC-Ttr-128812	Tursiops truncatus	86.26	0.00e+00	890.00
IUUC-Xma-133557	Xiphophorus maculatus	55.01	0.00e+00	636.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence