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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-006686
UUCD1 version UUC-ArT-00142
Ensembl Protein ID AT1G11160.1
UniProt Accession F4I7E1; F4I7E1_ARATH
Genbank Protein ID AEE28692.1
Protein Name Katanin p80 WD40 repeat-containing subunit B1 homolog
Genbank Nucleotide ID CP002684
Gene Name At1g11160; T28P6.17; T28P6_17
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G11160 AT1G11160.3 AT1G11160.3
AT1G11160 AT1G11160.2 AT1G11160.2
AT1G11160 AT1G11160.1 AT1G11160.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 5.00e-39 131.5 140 178
UBD/Beta-Prp 1.40e-54 186.2 13 250
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvllk 37
    gHt +++ ++f +d + +vsG+ D+++kvWDl+ g+ll+
   Q: 140 GHTRGISTIEFsPDgRWVVSGGLDNVVKVWDLTAGKLLH 178
    8***********99999******************9987 PP
   


   UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp 104
    +h++ ++c+ + ++ ++ll+tg++d ++ +w++ + + sl gh+++v +v f++++ + + g++ ++ik+wdl+ +k+v++++gh ++ +++f+p
   Q: 13 AHSGNVNCLSIgKKTSRLLLTGGDDYKVNLWSIGKTTSPMSLCGHTSPVDSVAFNSEEVLVLAGASSGVIKLWDLEESKMVRAFTGHRSNCSAVEFHP 110
    68888999999999********************************************9999************************************ PP
   S: 105 sgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldg 202
    g++l+sGs+d +rvwd++++ c++ t +gh++ +++++++pdg+ +vsG+lD++v++Wdl gkll++++ h+++++sl+f++ + l++gs d+
   Q: 111 FGEFLASGSSDTNLRVWDTRKKGCIQ-TYKGHTRGISTIEFSPDGRWVVSGGLDNVVKVWDLTAGKLLHEFKC-HEGPIRSLDFHPLEFLLATGSADR 206
    **************************.********************************************98.************************ PP
   S: 203 tvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssDgsir 247
    tvk+wdl+t e + t + + v+ ++f+p+++ l +g +Dg ++
   Q: 207 TVKFWDLETFELIGTTRPEATGVRAIAFHPDGQTLFCGLDDG-LK 250
    *************************************98666.34 PP
   

Organism Arabidopsis thaliana
Functional Description
(View)

Functional Description



     May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
May participate in a complex which severs microtubules in an ATP-dependent manner. Microtubule severing may promote rapid reorganization of cellular microtubule arrays.
Protein Sequence
(Fasta)
MAKRGYKLQE FVAHSGNVNC LSIGKKTSRL LLTGGDDYKV NLWSIGKTTS PMSLCGHTSP 60
VDSVAFNSEE VLVLAGASSG VIKLWDLEES KMVRAFTGHR SNCSAVEFHP FGEFLASGSS 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006686|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
AAAAATTCGT CGCTTTACTT TTTTTTATCT TCGTCTCTGT TTTGTTCGTC TGCTCGTGCC 60
ACTCTTTCAA AAAATCTCTT CTTTTCTTTC TAAGTTCTTC TTTAAATCTC TAATCTCAGC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006686|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0206--Cytoskeleton
KW-0493--Microtubule
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR026962--Katanin_bsu1
IPR028021--Katanin_C-terminal
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF13925--Katanin_con80
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0080008--C:Cul4-RING E3 ubiquitin ligase complex
GO:0008352--C:katanin complex
GO:0005874--C:microtubule
GO:0051013--P:microtubule severing

Orthology
iUUCD ID Species Identity E-value Score
IUUC-Aly-005897 Arabidopsis lyrata 92.79 0.00e+00 1876.00
IUUC-Acl-008307 Aspergillus clavatus 34.35 5.00e-29 121.00
IUUC-Bol-016453 Brassica oleracea 72.63 0.00e+00 1384.00
Created Date 25-Jun-2017

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