iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TCM_021273	EOY06603	EOY06603
TCM_021273	EOY06604	EOY06604
TCM_021273	EOY06601	EOY06601
TCM_021273	EOY06602	EOY06602

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.60e-23	80.8	460	492
UBD/Beta-Prp	1.90e-41	143.1	352	665

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf..sd.tl.lvsGsdDgtikvWDl 30
           H ++v++laf  ++ +l +v+++dD+ ikvWDl
   Q: 460  HVGGVNDLAFahPNkKLcVVTCGDDKLIKVWDL 492
           99*********9775554699***********7 PP

UBD/Beta-Prp

   S: 8    hhksvitcvkf.spdksllatgsrdgtikvwdvttgkl.....................................lrslsgheae................ 54
           h+ s +t+++f   +++lla+g+ +g i +w++++                                                 +                
   Q: 352  HQGSNVTSMDFhPSHDTLLAVGCSNGEISLWELSMRERlvskpfkiwdmatcsvpfqasivkessisvsrvawspD--------Gsligvaftkhlvhlhv 444
           6677788888844467788888888888888888877677777776666666666654443333333333333330........03333333333333333 PP
   S: 55   ...................vtavkfspdgk..ilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfsp..sgdklvsGshdrtirvwdletgqcleet 132
                              v+++ f +  k    vt+++D++ikvwdls +  +  ++ghe+ v+s+  ++  + +++ s+  d  i+ w  ++     + 
   Q: 445  yqasndlrphleidahvggVNDLAFAHPNKklCVVTCGDDKLIKVWDLSGSRLF-NFEGHEAPVYSVCPHQkeNIQFIFSTAVDGKIKAWLYDNMGSRVDY 544
           333333333333333333377777766555566677777777777777665544.5777777777777777644477777777777777766665555544 PP
   S: 133  lsghdgvvncvvvhpdgnllvsGsl....DrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelvsgsldgtvklwdlqtgecvrtlnghtdnvk..s 227
           +++ + + +++ ++ dg+ l+s+++    D+++  W+ + gk+ rt +g  ++s   ++fd ++++++++++d+++k+wd+ +++++ + ++     +  +
   Q: 545  DAPGQ-WCTTMLYSADGSRLFSCGTskdgDSFLVEWNESEGKIKRTYSGFRKNSPGVVQFDTTRNRFLAVGDDSQIKFWDMDNTNILTSTEAEGGLLSlpR 644
           44443.66666666666666666543333555555666777777777777777777777777777777777777777777777776666666554333114 PP
   S: 228  vrfspnderlvsgssDgsiri 248
           +rf +++++lv++++D+  ++
   Q: 645  LRFNKEGNLLVVTTADNGFKV 665
           666677777777777766554 PP

Organism

Theobroma cacao

Protein Sequence
(Fasta)

MSSLSRELVF LILQFLEEEK FKETVHKLEQ ESGFFFNMKY FEEKALAGEW DEVEKYLSGF 60
TKVDDNRYSM KIYFEIRKQK YLEALDRHDR AKAVEILVKD LKVFSTFNEE LYKEITQLLT 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AAGGTTATAA GTACAGAGTG CCTATCAATC TAGTGATAAG TTTTGGCACT TATCAATTGA 60
GGTCGGTACG CATCGATAAA AGTGAAACTC ACTTTCTCTC TCTTCTTTAT CTTTTTCTTT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR006595--CTLH_C
IPR006594--LisH
IPR011044--Quino_amine_DH_bsu
IPR011041--Quinoprot_gluc/sorb_DH
IPR011047--Quinoprotein_ADH-like_supfam
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Gene Ontology

GO:0003824--F:catalytic activity

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005503	Arabidopsis lyrata	77.86	0.00e+00	1769.00
IUUC-Ath-006901	Arabidopsis thaliana	77.56	0.00e+00	1773.00
IUUC-Bdi-014677	Brachypodium distachyon	72.49	0.00e+00	1631.00
IUUC-Bol-016487	Brassica oleracea	75.75	0.00e+00	1708.00
IUUC-Bra-016798	Brassica rapa	75.66	0.00e+00	1702.00
IUUC-Oba-075415	Oryza barthii	72.90	0.00e+00	1656.00
IUUC-Obr-076726	Oryza brachyantha	73.39	0.00e+00	1676.00
IUUC-Ogl-077810	Oryza glaberrima	72.90	0.00e+00	1656.00
IUUC-Ogu-078090	Oryza glumaepatula	72.90	0.00e+00	1656.00
IUUC-Oin-080158	Oryza indica	72.37	0.00e+00	1657.00
IUUC-Olo-080271	Oryza longistaminata	71.49	0.00e+00	1612.00
IUUC-Ome-081965	Oryza meridionalis	72.64	0.00e+00	1645.00
IUUC-Oni-082421	Oryza nivara	72.82	0.00e+00	1655.00
IUUC-Opu-083912	Oryza punctata	72.90	0.00e+00	1654.00
IUUC-Oru-085201	Oryza rufipogon	72.90	0.00e+00	1656.00
IUUC-Osa-086161	Oryza sativa	72.90	0.00e+00	1656.00
IUUC-Ppe-101491	Prunus persica	80.91	0.00e+00	1845.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence