iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Loc-052016

Ensembl Protein ID

ENSLOCP00000001048.1

UniProt Accession

W5LY41; W5LY41_LEPOC

Protein Name

Eukaryotic translation initiation factor 3 subunit F; Eukaryotic translation initiation factor 3 subunit 5

Gene Name

eif3f; EIF3F; EIF3S5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
ENSLOCG00000000938.1	ENSLOCT00000001052.1	ENSLOCP00000001048.1

Status

Unreviewed

Classification

Family	Identity	E-Value	Score	Source Orthology
DUB/JAMM	69.20	4.00e-113	405.00	IUUC-Hsa-046860

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Organism

Lepisosteus oculatus

Functional Description
(View)

Component of the eukaryotic translation initiation factor 3 (eIF-3) complex, which is involved in protein synthesis of a specialized repertoire of mRNAs and, together with other initiation factors, stimulates binding of mRNA and methionyl-tRNAi to the 40S ribosome. The eIF-3 complex specifically targets and initiates translation of a subset of mRNAs involved in cell proliferation.

Protein Sequence
(Fasta)

ATKLYGASFS HPFRTKMSVY GPIVKIHPVV LASIADSYER RNDGAIRVIG TLLGTIDKHT 60
VEVTNCFSVP HNESEDEVSL WGKLVGLYSV SSDVPVWEKN IERYATGYDI TEHSVLIHEY 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCCACTAAAC TTTATGGTGC TTCTTTCTCA CATCCTTTCC GGACCAAGAT GTCGGTATAC 60
GGGCCTATCG TGAAAATCCA CCCGGTGGTT TTGGCGTCTA TCGCCGATTC ATACGAGAGG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0396--Initiation factor
KW-0648--Protein biosynthesis
KW-1185--Reference proteome

Interpro

IPR027531--eIF3f
IPR000555--JAMM/MPN+_dom
IPR024969--Rpn11/EIF3F_C

Pfam

PF01398--JAB
PF13012--MitMem_reg

SMART

SM00232--JAB_MPN

Gene Ontology

GO:0016282--C:eukaryotic 43S preinitiation complex
GO:0033290--C:eukaryotic 48S preinitiation complex
GO:0005852--C:eukaryotic translation initiation factor 3 complex
GO:0003743--F:translation initiation factor activity
GO:0001731--P:formation of translation preinitiation complex
GO:0006446--P:regulation of translational initiation

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-001150	Aegilops tauschii	34.49	1.00e-39	157.00
IUUC-Aml-001527	Ailuropoda melanoleuca	72.66	1.00e-113	402.00
IUUC-Atr-002686	Amborella trichopoda	40.30	6.00e-41	160.00
IUUC-Apl-003977	Anas platyrhynchos	72.32	4.00e-93	333.00
IUUC-Aca-004335	Anolis carolinensis	71.75	2.00e-112	398.00
IUUC-Aly-005945	Arabidopsis lyrata	36.47	3.00e-39	155.00
IUUC-Ath-007045	Arabidopsis thaliana	36.70	3.00e-40	158.00
IUUC-Acl-008365	Aspergillus clavatus	30.94	3.00e-29	122.00
IUUC-Afl-008742	Aspergillus flavus	32.37	4.00e-28	118.00
IUUC-Afu-009030	Aspergillus fumigatus	30.94	3.00e-29	122.00
IUUC-Ani-009212	Aspergillus nidulans	32.01	6.00e-30	124.00
IUUC-Ang-009712	Aspergillus niger	31.07	1.00e-28	120.00
IUUC-Aor-009885	Aspergillus oryzae	32.37	6.00e-31	127.00
IUUC-Ate-010315	Aspergillus terreus	32.01	3.00e-27	115.00
IUUC-Ame-010801	Astyanax mexicanus	79.73	2.00e-30	125.00
IUUC-Bgr-011982	Blumeria graminis	29.79	6.00e-28	117.00
IUUC-Bta-012804	Bos taurus	69.93	3.00e-114	404.00
IUUC-Bci-013891	Botrytis cinerea	29.71	9.00e-25	107.00
IUUC-Bdi-014328	Brachypodium distachyon	37.26	8.00e-41	160.00
IUUC-Bol-015446	Brassica oleracea	35.74	4.00e-39	154.00
IUUC-Bra-016862	Brassica rapa	36.12	6.00e-40	157.00
IUUC-Cel-018171	Caenorhabditis elegans	31.12	2.00e-36	146.00
IUUC-Cja-019335	Callithrix jacchus	72.49	9.00e-114	403.00
IUUC-Cfa-020138	Canis familiaris	72.28	7.00e-113	399.00
IUUC-Cpo-022109	Cavia porcellus	63.50	8.00e-95	340.00
IUUC-Cre-022664	Chlamydomonas reinhardtii	38.15	1.00e-50	193.00
IUUC-Csa-023994	Chlorocebus sabaeus	72.49	1.00e-113	402.00
IUUC-Cho-024351	Choloepus hoffmanni	53.16	1.00e-71	263.00
IUUC-Cin-025801	Ciona intestinalis	49.45	3.00e-71	261.00
IUUC-Csv-025805	Ciona savignyi	48.58	5.00e-71	260.00
IUUC-Cgl-026643	Colletotrichum gloeosporioides	25.99	6.00e-23	101.00
IUUC-Cne-026868	Cryptococcus neoformans	28.83	7.00e-20	90.90
IUUC-Cme-027328	Cyanidioschyzon merolae	24.29	3.00e-14	72.40
IUUC-Dre-028085	Danio rerio	78.39	7.00e-123	432.00
IUUC-Dno-030099	Dasypus novemcinctus	72.28	5.00e-113	400.00
IUUC-Dor-030324	Dipodomys ordii	64.42	4.00e-95	341.00
IUUC-Dse-031314	Dothistroma septosporum	33.21	3.00e-32	132.00
IUUC-Dme-031926	Drosophila melanogaster	48.38	6.00e-72	263.00
IUUC-Ete-032569	Echinops telfairi	67.66	2.00e-102	364.00
IUUC-Eca-033502	Equus caballus	69.52	1.00e-105	376.00
IUUC-Eeu-034883	Erinaceus europaeus	63.24	3.00e-63	234.00
IUUC-Fca-035873	Felis catus	72.66	2.00e-113	401.00
IUUC-Fal-036921	Ficedula albicollis	73.61	2.00e-116	411.00
IUUC-Fox-037765	Fusarium oxysporum	28.52	1.00e-22	100.00
IUUC-Fso-038240	Fusarium solani	28.52	9.00e-24	104.00
IUUC-Gmo-038864	Gadus morhua	80.29	1.00e-126	445.00
IUUC-Ggr-039862	Gaeumannomyces graminis	26.16	2.00e-19	89.70
IUUC-Gga-040952	Gallus gallus	73.23	2.00e-115	408.00
IUUC-Gac-041677	Gasterosteus aculeatus	78.70	4.00e-125	440.00
IUUC-Gma-043061	Glycine max	37.45	9.00e-38	150.00
IUUC-Ggo-045591	Gorilla gorilla	72.49	7.00e-114	403.00
IUUC-Hsa-046860	Homo sapiens	72.49	1.00e-113	402.00
IUUC-Hvu-047410	Hordeum vulgare	32.19	9.00e-22	95.90
IUUC-Itr-048211	Ictidomys tridecemlineatus	73.03	7.00e-114	403.00
IUUC-Lch-049410	Latimeria chalumnae	60.66	6.00e-69	253.00
IUUC-Lpe-051102	Leersia perrieri	37.25	7.00e-41	160.00
IUUC-Lma-053157	Leptosphaeria maculans	31.25	8.00e-32	130.00
IUUC-Laf-054568	Loxodonta africana	72.12	3.00e-113	401.00
IUUC-Mcc-054613	Macaca mulatta	72.49	8.00e-114	403.00
IUUC-Meu-056832	Macropus eugenii	76.98	4.00e-61	227.00
IUUC-Mor-057104	Magnaporthe oryzae	26.76	1.00e-19	90.90
IUUC-Mtr-058445	Medicago truncatula	37.83	9.00e-49	186.00
IUUC-Mla-059038	Melampsora laricipopulina	28.72	3.00e-19	89.00
IUUC-Mga-059548	Meleagris gallopavo	72.88	7.00e-100	356.00
IUUC-Mvi-060520	Microbotryum violaceum	24.00	4.00e-12	65.50
IUUC-Mdo-062376	Monodelphis domestica	73.41	3.00e-114	404.00
IUUC-Mmu-063254	Mus musculus	72.66	5.00e-113	400.00
IUUC-Mac-065635	Musa acuminata	37.86	9.00e-43	166.00
IUUC-Mpu-066314	Mustela putorius furo	72.66	2.00e-113	401.00
IUUC-Mlu-067512	Myotis lucifugus	72.28	3.00e-112	398.00
IUUC-Nfi-068262	Neosartorya fischeri	30.94	3.00e-29	122.00
IUUC-Ncr-068872	Neurospora crassa	28.16	1.00e-20	93.60
IUUC-Nle-070118	Nomascus leucogenys	72.66	2.00e-113	402.00
IUUC-Opr-071228	Ochotona princeps	71.91	2.00e-97	348.00
IUUC-Ont-072600	Oreochromis niloticus	82.90	2.00e-127	448.00
IUUC-Oan-073584	Ornithorhynchus anatinus	73.31	4.00e-101	360.00
IUUC-Ocu-074542	Oryctolagus cuniculus	72.66	1.00e-113	402.00
IUUC-Oba-075923	Oryza barthii	36.88	1.00e-42	166.00
IUUC-Obr-076313	Oryza brachyantha	37.25	3.00e-42	164.00
IUUC-Ogl-076932	Oryza glaberrima	36.88	1.00e-42	166.00
IUUC-Ogu-078152	Oryza glumaepatula	36.88	1.00e-42	166.00
IUUC-Oin-079528	Oryza indica	36.88	1.00e-42	166.00
IUUC-Olo-080401	Oryza longistaminata	36.88	1.00e-42	166.00
IUUC-Ome-081553	Oryza meridionalis	37.26	5.00e-43	167.00
IUUC-Oni-082090	Oryza nivara	36.88	9.00e-43	166.00
IUUC-Opu-083583	Oryza punctata	37.25	1.00e-41	163.00
IUUC-Oru-084492	Oryza rufipogon	36.88	1.00e-42	166.00
IUUC-Osa-085383	Oryza sativa	36.88	1.00e-42	166.00
IUUC-Ola-086835	Oryzias latipes	80.66	5.00e-128	449.00
IUUC-Olu-087716	Ostreococcus lucimarinus	25.56	3.00e-18	85.10
IUUC-Oga-088886	Otolemur garnettii	73.03	4.00e-114	404.00
IUUC-Oar-090079	Ovis aries	69.93	3.00e-114	404.00
IUUC-Ptr-091457	Pan troglodytes	72.49	1.00e-113	402.00
IUUC-Pan-092317	Papio anubis	77.42	4.00e-84	303.00
IUUC-Psi-093129	Pelodiscus sinensis	69.11	5.00e-103	367.00
IUUC-Pma-094488	Petromyzon marinus	70.70	6.00e-114	403.00
IUUC-Pno-095049	Phaeosphaeria nodorum	31.52	7.00e-32	130.00
IUUC-Ppa-095341	Physcomitrella patens	38.66	3.00e-51	195.00
IUUC-Pfo-096286	Poecilia formosa	79.14	1.00e-127	449.00
IUUC-Pab-097765	Pongo abelii	72.49	1.00e-113	402.00
IUUC-Pop-099131	Populus trichocarpa	39.62	2.00e-45	175.00
IUUC-Pca-100524	Procavia capensis	67.09	2.00e-86	311.00
IUUC-Ppe-101934	Prunus persica	39.33	3.00e-50	191.00
IUUC-Pva-102577	Pteropus vampyrus	71.91	3.00e-112	398.00
IUUC-Pgr-103521	Puccinia graminis	26.61	6.00e-19	87.80
IUUC-Pte-104304	Pyrenophora teres	31.52	1.00e-31	130.00
IUUC-Pyt-104563	Pyrenophora triticirepentis	31.52	1.00e-31	130.00
IUUC-Rno-105717	Rattus norvegicus	72.66	4.00e-113	401.00
IUUC-Sha-107190	Sarcophilus harrisii	74.33	6.00e-112	397.00
IUUC-Sja-107918	Schizosaccharomyces japonicus	30.71	3.00e-32	131.00
IUUC-Spo-108355	Schizosaccharomyces pombe	32.03	1.00e-32	133.00
IUUC-Smo-109374	Selaginella moellendorffii	41.11	4.00e-54	204.00
IUUC-Sit-110119	Setaria italica	36.50	3.00e-42	165.00
IUUC-Sly-111570	Solanum lycopersicum	35.42	8.00e-38	150.00
IUUC-Stu-112308	Solanum tuberosum	38.24	8.00e-44	170.00
IUUC-Sar-113515	Sorex araneus	76.60	4.00e-40	157.00
IUUC-Sbi-114605	Sorghum bicolor	36.88	1.00e-42	167.00
IUUC-Sre-114906	Sporisorium reilianum	36.36	3.00e-43	168.00
IUUC-Tgu-117087	Taeniopygia guttata	72.03	5.00e-98	350.00
IUUC-Tru-117700	Takifugu rubripes	76.62	2.00e-124	438.00
IUUC-Tni-120470	Tetraodon nigroviridis	78.75	1.00e-125	442.00
IUUC-Tca-121109	Theobroma cacao	37.83	5.00e-38	151.00
IUUC-Tre-122095	Trichoderma reesei	29.64	4.00e-23	102.00
IUUC-Tvi-122580	Trichoderma virens	29.29	2.00e-22	99.80
IUUC-Tae-125129	Triticum aestivum	37.64	3.00e-44	171.00
IUUC-Tur-126658	Triticum urartu	36.30	4.00e-41	161.00
IUUC-Tme-127043	Tuber melanosporum	34.91	2.00e-35	142.00
IUUC-Tbe-127927	Tupaia belangeri	72.66	2.00e-113	401.00
IUUC-Ttr-129231	Tursiops truncatus	73.03	8.00e-114	403.00
IUUC-Uma-129578	Ustilago maydis	35.64	3.00e-41	162.00
IUUC-Vda-129730	Verticillium dahliae	28.42	3.00e-26	112.00
IUUC-Vpa-130677	Vicugna pacos	48.91	1.00e-28	120.00
IUUC-Vvi-130968	Vitis vinifera	39.33	1.00e-44	172.00
IUUC-Xtr-132203	Xenopus tropicalis	74.07	2.00e-117	414.00
IUUC-Xma-133972	Xiphophorus maculatus	80.59	4.00e-127	447.00
IUUC-Yli-134553	Yarrowia lipolytica	32.50	3.00e-29	122.00
IUUC-Zma-134941	Zea mays	37.36	1.00e-38	152.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence