iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Tur-126532

Ensembl Protein ID

TRIUR3_33198-P1

UniProt Accession

M8AQE6; M8AQE6_TRIUA

Genbank Protein ID

EMS67340.1

Protein Name

U4/U6 small nuclear ribonucleoprotein PRP4-like protein

Genbank Nucleotide ID

KD020484

Gene Name

TRIUR3_33198

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
TRIUR3_33198	TRIUR3_33198-T1	TRIUR3_33198-P1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-31	106.8	263	299
UBD/Beta-Prp	3.90e-53	181.3	139	370

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlrtgvl 35
           gH+ sv++++f +d  l +s++ D + +vWDlr+g+l
   Q: 263  GHSRSVYGVSFhPDgSLAASCGLDANARVWDLRSGRL 299
           8***********998999*****************97 PP

UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsf 102
           ++ ++t   fs+d s+lat+s++g ikvw++ + +++++l+gh++  t+v fsp ++ l+t+s D+t+k+w+  +g+ ++++ gh d++  ++f
   Q: 139  DDRPLTGCSFSRDASMLATSSWSGIIKVWSMPQITKIATLKGHTERATDVAFSPVDNCLATASADKTAKLWNR-DGSLLMSFDGHLDRLARVAF 231
           6789999****************************************************************95.689***************** PP
   S: 103  spsgdklvsGshdrtirvwdletgqcleetlsghdgvvncvvvhpdgnllvsGslDrtvrlWdlktgkllrtltgghtdsvyslsfdsngkelv 196
           +psg++l ++s d+t r+wd++tg++l  +++gh+++v +v++hpdg+l +s++lD   r+Wdl++g+l  tl g h ++v  +sf++ng  ++
   Q: 232  HPSGKYLGTASFDKTWRLWDINTGTELL-LQEGHSRSVYGVSFHPDGSLAASCGLDANARVWDLRSGRLYCTLIG-HVKPVLGVSFSPNGHLVA 323
           ****************************.*********************************************9.****************** PP
   S: 197  sgsldgtvklwdlqtgecvrtlnghtdnvksvrfspnderlvsgssD 243
           ++s+d+  ++wdl+t ++v++  +h++ ++ v+f p++ +++ +ss 
   Q: 324  TASEDNFCRIWDLRTRQMVYSIPAHKSLISHVKFEPQEGYYLATSSY 370
           ***********************************888888777754 PP

Organism

Triticum urartu

Protein Sequence
(Fasta)

MAVPTNDSAV RARLRRLGEP ITLFGEREME RRDRLRALMV RLEADGQFDR LLRAQEDEQG 60
APGDDDDMEQ IQYPFFTEGT NQLLQARVDI AMYSLPRAKA RVDSAKRRLA GPDEDPEAEA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGGCCGTGC CCACCAACGA CTCCGCCGTG CGCGCGCGCC TCCGCCGTCT CGGCGAGCCC 60
ATCACGCTCT TCGGCGAGCG CGAGATGGAG CGCCGCGACC GCCTACGCGC ACTCATGGTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0687--Ribonucleoprotein
KW-0543--Viral nucleoprotein
KW-0946--Virion
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR014906--PRP4-like
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08799--PRP4
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00500--SFM
SM00320--WD40

Gene Ontology

GO:0030529--C:intracellular ribonucleoprotein complex
GO:0019013--C:viral nucleocapsid

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000771	Aegilops tauschii	97.33	0.00e+00	712.00
IUUC-Aml-001737	Ailuropoda melanoleuca	43.86	2.00e-90	325.00
IUUC-Atr-002828	Amborella trichopoda	64.80	2.00e-142	498.00
IUUC-Apl-003723	Anas platyrhynchos	43.08	2.00e-89	322.00
IUUC-Aca-004972	Anolis carolinensis	43.34	6.00e-88	317.00
IUUC-Aly-006531	Arabidopsis lyrata	66.93	1.00e-137	482.00
IUUC-Ath-007367	Arabidopsis thaliana	65.51	3.00e-149	520.00
IUUC-Acl-008236	Aspergillus clavatus	40.48	1.00e-62	233.00
IUUC-Afl-008522	Aspergillus flavus	40.38	5.00e-66	244.00
IUUC-Afu-008904	Aspergillus fumigatus	38.74	3.00e-68	251.00
IUUC-Ani-009198	Aspergillus nidulans	40.65	3.00e-67	248.00
IUUC-Ang-009662	Aspergillus niger	38.70	2.00e-68	252.00
IUUC-Aor-009881	Aspergillus oryzae	40.38	3.00e-66	245.00
IUUC-Ate-010333	Aspergillus terreus	38.55	3.00e-64	238.00
IUUC-Ame-011697	Astyanax mexicanus	42.04	1.00e-88	319.00
IUUC-Bgr-012254	Blumeria graminis	37.83	4.00e-69	254.00
IUUC-Bta-012615	Bos taurus	43.60	4.00e-90	324.00
IUUC-Bci-013720	Botrytis cinerea	39.30	3.00e-70	258.00
IUUC-Bdi-014302	Brachypodium distachyon	91.20	0.00e+00	663.00
IUUC-Bol-015594	Brassica oleracea	67.91	3.00e-141	494.00
IUUC-Bra-017465	Brassica rapa	67.38	2.00e-140	491.00
IUUC-Cja-019747	Callithrix jacchus	43.86	9.00e-91	326.00
IUUC-Cfa-020288	Canis familiaris	43.86	1.00e-90	325.00
IUUC-Cpo-021440	Cavia porcellus	43.60	1.00e-89	322.00
IUUC-Cho-024481	Choloepus hoffmanni	42.93	2.00e-88	318.00
IUUC-Cgl-026538	Colletotrichum gloeosporioides	39.19	2.00e-68	253.00
IUUC-Cne-026793	Cryptococcus neoformans	42.62	4.00e-79	287.00
IUUC-Dre-028723	Danio rerio	43.34	4.00e-91	327.00
IUUC-Dno-029299	Dasypus novemcinctus	43.86	1.00e-90	326.00
IUUC-Dse-031562	Dothistroma septosporum	37.57	2.00e-62	232.00
IUUC-Ete-032669	Echinops telfairi	44.13	3.00e-91	328.00
IUUC-Eca-033566	Equus caballus	43.86	2.00e-90	325.00
IUUC-Eeu-034524	Erinaceus europaeus	49.57	9.00e-69	253.00
IUUC-Fca-036215	Felis catus	43.86	1.00e-90	326.00
IUUC-Fal-037018	Ficedula albicollis	43.05	5.00e-86	310.00
IUUC-Fox-037936	Fusarium oxysporum	37.87	7.00e-62	230.00
IUUC-Fso-038366	Fusarium solani	38.93	6.00e-67	247.00
IUUC-Ggr-039942	Gaeumannomyces graminis	38.44	4.00e-60	224.00
IUUC-Gga-040797	Gallus gallus	43.08	9.00e-90	323.00
IUUC-Gma-044220	Glycine max	68.09	3.00e-135	474.00
IUUC-Ggo-044682	Gorilla gorilla	43.86	2.00e-90	325.00
IUUC-Hsa-045804	Homo sapiens	43.86	1.00e-90	326.00
IUUC-Hvu-047607	Hordeum vulgare	95.73	0.00e+00	714.00
IUUC-Itr-047882	Ictidomys tridecemlineatus	44.13	4.00e-91	327.00
IUUC-Lpe-051333	Leersia perrieri	85.07	3.00e-171	593.00
IUUC-Loc-052164	Lepisosteus oculatus	42.56	9.00e-90	323.00
IUUC-Lma-053088	Leptosphaeria maculans	38.74	4.00e-67	248.00
IUUC-Laf-053460	Loxodonta africana	43.86	1.00e-90	326.00
IUUC-Mcc-055859	Macaca mulatta	43.86	1.00e-90	326.00
IUUC-Meu-056134	Macropus eugenii	43.34	2.00e-90	325.00
IUUC-Mor-057251	Magnaporthe oryzae	39.26	3.00e-68	251.00
IUUC-Mtr-057656	Medicago truncatula	66.93	5.00e-138	483.00
IUUC-Mla-059145	Melampsora laricipopulina	42.75	1.00e-76	279.00
IUUC-Mga-059855	Meleagris gallopavo	43.08	9.00e-90	323.00
IUUC-Mmr-060826	Microcebus murinus	43.86	9.00e-91	326.00
IUUC-Mdo-062748	Monodelphis domestica	43.34	6.00e-90	323.00
IUUC-Mmu-063351	Mus musculus	43.86	1.00e-90	325.00
IUUC-Mac-064846	Musa acuminata	74.07	5.00e-150	523.00
IUUC-Mpu-066006	Mustela putorius furo	43.86	1.00e-90	326.00
IUUC-Mlu-067722	Myotis lucifugus	44.13	2.00e-91	328.00
IUUC-Nfi-068399	Neosartorya fischeri	38.48	8.00e-70	256.00
IUUC-Ncr-068711	Neurospora crassa	40.52	4.00e-74	271.00
IUUC-Nle-069982	Nomascus leucogenys	43.86	9.00e-91	326.00
IUUC-Opr-070596	Ochotona princeps	43.60	3.00e-90	325.00
IUUC-Ont-072374	Oreochromis niloticus	43.86	2.00e-88	318.00
IUUC-Ocu-074371	Oryctolagus cuniculus	43.60	3.00e-90	324.00
IUUC-Oba-075083	Oryza barthii	88.53	1.00e-179	621.00
IUUC-Obr-076405	Oryza brachyantha	86.93	5.00e-178	616.00
IUUC-Ogl-077683	Oryza glaberrima	88.53	7.00e-180	622.00
IUUC-Ogu-078486	Oryza glumaepatula	88.00	7.00e-180	622.00
IUUC-Oin-079679	Oryza indica	87.73	0.00e+00	639.00
IUUC-Ome-081230	Oryza meridionalis	87.73	0.00e+00	639.00
IUUC-Oni-082961	Oryza nivara	87.73	0.00e+00	640.00
IUUC-Opu-083189	Oryza punctata	88.00	2.00e-180	624.00
IUUC-Oru-084353	Oryza rufipogon	87.73	0.00e+00	639.00
IUUC-Osa-085458	Oryza sativa	87.73	0.00e+00	639.00
IUUC-Olu-087580	Ostreococcus lucimarinus	45.36	2.00e-69	255.00
IUUC-Oga-088703	Otolemur garnettii	41.36	2.00e-84	305.00
IUUC-Oar-089829	Ovis aries	44.13	9.00e-91	326.00
IUUC-Ptr-090838	Pan troglodytes	43.86	1.00e-90	326.00
IUUC-Pan-092261	Papio anubis	43.75	4.00e-89	320.00
IUUC-Psi-093020	Pelodiscus sinensis	42.56	3.00e-89	321.00
IUUC-Pno-094858	Phaeosphaeria nodorum	41.48	1.00e-66	246.00
IUUC-Ppa-095531	Physcomitrella patens	59.08	9.00e-127	446.00
IUUC-Pop-100051	Populus trichocarpa	66.84	7.00e-136	476.00
IUUC-Pca-100152	Procavia capensis	43.86	2.00e-90	325.00
IUUC-Ppe-101244	Prunus persica	65.51	9.00e-132	462.00
IUUC-Pva-102529	Pteropus vampyrus	41.51	1.00e-81	296.00
IUUC-Pgr-103550	Puccinia graminis	43.73	4.00e-82	298.00
IUUC-Ptt-103951	Puccinia triticina	40.11	9.00e-69	253.00
IUUC-Pte-104151	Pyrenophora teres	37.82	3.00e-59	221.00
IUUC-Pyt-104571	Pyrenophora triticirepentis	36.80	8.00e-59	220.00
IUUC-Rno-105747	Rattus norvegicus	44.13	7.00e-91	327.00
IUUC-Sha-107334	Sarcophilus harrisii	43.34	2.00e-90	325.00
IUUC-Sja-107794	Schizosaccharomyces japonicus	37.37	5.00e-59	220.00
IUUC-Spo-108189	Schizosaccharomyces pombe	40.72	3.00e-76	278.00
IUUC-Ssl-108550	Sclerotinia sclerotiorum	38.21	8.00e-70	256.00
IUUC-Smo-108924	Selaginella moellendorffii	58.56	2.00e-126	444.00
IUUC-Sit-110102	Setaria italica	86.74	6.00e-178	616.00
IUUC-Sly-111668	Solanum lycopersicum	69.87	2.00e-137	481.00
IUUC-Stu-111928	Solanum tuberosum	70.13	4.00e-138	483.00
IUUC-Sbi-114134	Sorghum bicolor	88.06	8.00e-180	622.00
IUUC-Sre-115114	Sporisorium reilianum	42.86	2.00e-77	281.00
IUUC-Ssc-115443	Sus scrofa	43.86	2.00e-90	325.00
IUUC-Tgu-117157	Taeniopygia guttata	42.82	3.00e-90	324.00
IUUC-Tru-118587	Takifugu rubripes	44.13	4.00e-91	327.00
IUUC-Tni-120427	Tetraodon nigroviridis	43.37	6.00e-91	327.00
IUUC-Tca-121368	Theobroma cacao	69.15	3.00e-146	511.00
IUUC-Tre-122074	Trichoderma reesei	39.01	6.00e-68	250.00
IUUC-Tvi-122349	Trichoderma virens	38.40	1.00e-66	246.00
IUUC-Tae-124076	Triticum aestivum	100.00	0.00e+00	743.00
IUUC-Ttr-129169	Tursiops truncatus	39.35	7.00e-51	193.00
IUUC-Uma-129399	Ustilago maydis	39.66	5.00e-73	267.00
IUUC-Vda-129842	Verticillium dahliae	40.21	1.00e-71	262.00
IUUC-Vpa-130440	Vicugna pacos	43.60	1.00e-90	325.00
IUUC-Vvi-131075	Vitis vinifera	67.37	2.00e-137	481.00
IUUC-Yli-134569	Yarrowia lipolytica	38.60	9.00e-65	239.00
IUUC-Zma-135799	Zea mays	82.34	0.00e+00	626.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence