iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Pop-099269

Ensembl Protein ID

POPTR_0008s05770.1

UniProt Accession

B9HMJ4; B9HMJ4_POPTR

Genbank Protein ID

EEE89471.1

Protein Name

B-type cell cycle switch protein ccs52B

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_820353; POPTR_0008s05770g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s05770	POPTR_0008s05770.1	POPTR_0008s05770.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	7.80e-27	93.3	343	381
E3 adaptor/Cullin RING/APC_C/CDC20	3.00e-141	471.2	166	467

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGs..dDgtikvWDlrtgvl 35
           Ht+ v ++a+   +++ll+sG+   D  i+ W+++ g++
   Q: 343  HTAAVKAIAWsphQSGLLASGGgtADRCIRFWNTTNGHQ 381
           9**********7533*****7777**********99987 PP

E3 adaptor/Cullin RING/APC_C/CDC20

   S: 1    pekvldapelrddfylnLldWssknvlavaLgssvylwsaktgdvskladleekdlvtsvswieegtllavGtkkgeveiyDveekkkvrt 91
           p+kvldap+l+ddfylnL+dWss+nvlav+Lg++vylw a++++v++l+dl ++d+v+sv+w++eg++++vGt+ g+v+++D +++k+vrt
   Q: 166  PHKVLDAPSLQDDFYLNLVDWSSQNVLAVGLGTCVYLWTASNSKVTRLCDLGPNDSVCSVQWTREGSYISVGTHLGQVQVWDGTQCKRVRT 256
           689**************************************************************************************** PP
   S: 92   ltghsarvgaLsWnaevlssGsrdgeilhrdvrvkelklstlqahaqevCGlkwnedaklLasGGnDnsvsvwdasssePlkkfkehkaav 182
           + gh++r g L+Wn+ +l+sGsrd++il++d+r++   +s+l +h++evCGlkw++d+++LasGGnDn++ vw+++s+ P+ k +eh+aav
   Q: 257  MGGHQTRTGVLAWNSRTLASGSRDRHILQHDLRISSDYVSKLIGHKSEVCGLKWSHDDRELASGGNDNQLLVWNQHSQLPILKLTEHTAAV 347
           ******************************************************************************************* PP
   S: 183  kaiawsPwqkslLasGGGtaDrcikfwntltgalleeidtgsqvcsllwskkskelvsthGfaenkitlwkypslskvaelkgheaRvlsl 273
           kaiawsP+q++lLasGGGtaDrci+fwnt++g++l+ +dtgsqvc+l+wsk+ +elvsthG+++n+i++wkypslskva+l gh++Rvl+l
   Q: 348  KAIAWSPHQSGLLASGGGTADRCIRFWNTTNGHQLNYVDTGSQVCNLAWSKNVNELVSTHGYSQNQIMVWKYPSLSKVATLVGHSLRVLYL 438
           ******************************************************************************************* PP
   S: 274  alspdgeaivtaagDetlrfwklfdkkka 302
           a+spdg++ivt+agDetlrfw++f + k+
   Q: 439  AMSPDGQTIVTGAGDETLRFWNVFPSMKT 467
           ************************87665 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MDSTPRRKSG LNLPSGMNET SLRLETFSSS SSFRAVTCVS SPRAISSLSS PSKTSSCSDR 60
FIPCRSSSRL HTFGLVEKGS PVKEGGNEAY ARLLKSELFG SDFGSFSSPA GGQGGLSSPN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TGAGCTTGGC CCAAGCAAGA AATTGACCGT TGGAATCTTG AAACAAAACA CACTATATAA 60
AAACAACTTT AAAACCCAAA AAAAACCCTT CTCTTTACCA ACTCCGCTCC TGCATATCCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0853--WD repeat

Interpro

IPR033010--Cdc20/Fizzy
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

SMART

SM00320--WD40

Gene Ontology

GO:0097027--F:ubiquitin-protein transferase activator activity
GO:1904668--P:positive regulation of ubiquitin protein ligase activity

KEGG

pop:POPTR_0008s05770g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006009	Arabidopsis lyrata	81.34	0.00e+00	726.00
IUUC-Ath-007167	Arabidopsis thaliana	80.12	0.00e+00	708.00
IUUC-Bol-016159	Brassica oleracea	78.47	0.00e+00	717.00
IUUC-Bra-017745	Brassica rapa	78.31	0.00e+00	714.00
IUUC-Cre-022944	Chlamydomonas reinhardtii	45.61	1.00e-101	362.00
IUUC-Ete-032562	Echinops telfairi	73.74	7.00e-84	303.00
IUUC-Gma-043563	Glycine max	78.60	0.00e+00	732.00
IUUC-Hvu-047486	Hordeum vulgare	79.32	7.00e-147	512.00
IUUC-Lpe-051568	Leersia perrieri	72.84	5.00e-164	570.00
IUUC-Oba-075417	Oryza barthii	77.63	2.00e-158	551.00
IUUC-Obr-076033	Oryza brachyantha	75.93	0.00e+00	637.00
IUUC-Ogl-077441	Oryza glaberrima	75.58	5.00e-179	620.00
IUUC-Ogu-078877	Oryza glumaepatula	72.98	2.00e-174	605.00
IUUC-Oin-079461	Oryza indica	73.27	3.00e-170	590.00
IUUC-Olo-080716	Oryza longistaminata	73.86	7.00e-165	573.00
IUUC-Ome-081663	Oryza meridionalis	74.53	7.00e-172	597.00
IUUC-Oni-083097	Oryza nivara	73.27	2.00e-170	591.00
IUUC-Opu-083464	Oryza punctata	72.98	9.00e-170	589.00
IUUC-Oru-084848	Oryza rufipogon	73.27	2.00e-170	591.00
IUUC-Osa-085451	Oryza sativa	75.58	5.00e-179	620.00
IUUC-Pno-095139	Phaeosphaeria nodorum	59.38	2.00e-113	402.00
IUUC-Ppe-101285	Prunus persica	84.60	0.00e+00	761.00
IUUC-Sly-111395	Solanum lycopersicum	80.12	0.00e+00	744.00
IUUC-Stu-112356	Solanum tuberosum	81.53	0.00e+00	768.00
IUUC-Tsy-118931	Tarsius syrichta	39.59	2.00e-56	213.00
IUUC-Tca-121682	Theobroma cacao	87.89	0.00e+00	785.00
IUUC-Tur-126545	Triticum urartu	72.61	1.00e-133	468.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence