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Basic Information Integrated Annotations
Tag Content
UUCD2 ID IUUC-Sce-106401
UUCD1 version UUC-SaC-00212
Ensembl Protein ID YOR272W
UniProt Accession Q12024; D6W2X2; YTM1_YEAST
Genbank Protein ID AAB51396.1; CAA61778.1; CAA99497.1; DAA11038.1
Protein Name Ribosome biogenesis protein YTM1; Microtubule-associated protein YTM1
Genbank Nucleotide ID U92821; X89633; Z75180; BK006948
Gene Name YTM1; YOR272W
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
YOR272W YOR272W YOR272W
Annotation
mRNA Expression
GEOFFGED
Protein-protein Interaction
IIDiRefIndexHINTMentha
Post-translational Modifications (PTMs)
CPLMdbPAFdbPTMPHOSIDA
BioGRID
Protein Expression/Proteomics
GPMDB
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 7.30e-33 109.7 373 408
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           gH++ v++l+    ++ +l+sGs+Dgt+kvWD+r+ 
   Q: 373  GHKNFVSSLDTcpeNEYILCSGSHDGTVKVWDVRST 408
           788889999867544466899************986 PP
   
Organism Saccharomyces cerevisiae
Functional Description
(View)

Functional Description


     Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
 Component of the NOP7 complex, which is required for maturation of the 25S and 5.8S ribosomal RNAs and formation of the 60S ribosome.
Protein Sequence
(Fasta)
MTEDKSQVKI RFFTREKDEL LHVQDTPMYA PISLKRYGLS EIVNHLLGSE KPVPFDFLIE 60
GELLRTSLHD YLTKKGLSSE ASLNVEYTRA ILPPSYLNSF SNEDWVSSLD VGDGSKHIIS 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Sce-106401|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGACAGAAG ATAAATCGCA GGTTAAAATC AGGTTTTTCA CGCGTGAGAA AGATGAATTA 60
CTACATGTAC AAGATACTCC AATGTACGCC CCCATCTCAT TAAAGAGATA TGGGTTGTCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Sce-106401|E3,WD_repeat|Saccharomyces cerevisiae
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1
PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF08154--NLE
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0070545--C:PeBoW complex
GO:0030687--C:preribosome, large subunit precursor
GO:0051276--P:chromosome organization
GO:0000460--P:maturation of 5.8S rRNA
GO:0000470--P:maturation of LSU-rRNA
GO:0042273--P:ribosomal large subunit biogenesis
KEGG sce:YOR272W
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000532 Aegilops tauschii 30.52 5.00e-48 183.00
IUUC-Aml-001997 Ailuropoda melanoleuca 30.21 4.00e-37 146.00
IUUC-Atr-002544 Amborella trichopoda 27.56 8.00e-41 159.00
IUUC-Apl-003981 Anas platyrhynchos 29.63 2.00e-38 151.00
IUUC-Aca-004370 Anolis carolinensis 30.85 3.00e-46 177.00
IUUC-Aly-006455 Arabidopsis lyrata 29.41 1.00e-46 178.00
IUUC-Ath-006669 Arabidopsis thaliana 29.18 4.00e-42 163.00
IUUC-Ago-007864 Ashbya gossypii 73.70 0.00e+00 691.00
IUUC-Acl-008177 Aspergillus clavatus 41.07 1.00e-96 344.00
IUUC-Afl-008617 Aspergillus flavus 42.74 2.00e-99 354.00
IUUC-Afu-008752 Aspergillus fumigatus 41.06 2.00e-94 337.00
IUUC-Ani-009136 Aspergillus nidulans 42.74 2.00e-94 337.00
IUUC-Ang-009701 Aspergillus niger 41.55 2.00e-92 330.00
IUUC-Aor-009884 Aspergillus oryzae 42.74 1.00e-99 355.00
IUUC-Ate-010472 Aspergillus terreus 42.48 7.00e-57 211.00
IUUC-Ame-011432 Astyanax mexicanus 29.26 2.00e-43 167.00
IUUC-Bgr-012218 Blumeria graminis 40.85 2.00e-86 311.00
IUUC-Bta-012829 Bos taurus 29.61 5.00e-39 153.00
IUUC-Bci-013953 Botrytis cinerea 38.28 3.00e-85 306.00
IUUC-Bdi-014351 Brachypodium distachyon 28.81 2.00e-42 164.00
IUUC-Bol-016190 Brassica oleracea 30.43 1.00e-47 181.00
IUUC-Bra-017876 Brassica rapa 30.06 2.00e-50 191.00
IUUC-Cel-018569 Caenorhabditis elegans 26.11 6.00e-22 96.30
IUUC-Cja-019468 Callithrix jacchus 29.82 3.00e-37 147.00
IUUC-Cfa-020471 Canis familiaris 29.82 8.00e-38 149.00
IUUC-Cpo-022260 Cavia porcellus 30.18 2.00e-38 150.00
IUUC-Cre-022614 Chlamydomonas reinhardtii 30.35 2.00e-44 171.00
IUUC-Csa-023989 Chlorocebus sabaeus 29.52 1.00e-36 145.00
IUUC-Cho-024426 Choloepus hoffmanni 28.77 3.00e-26 110.00
IUUC-Cin-025789 Ciona intestinalis 29.18 3.00e-38 150.00
IUUC-Cgl-026562 Colletotrichum gloeosporioides 42.47 3.00e-25 106.00
IUUC-Cne-027063 Cryptococcus neoformans 37.84 3.00e-18 84.30
IUUC-Dre-027907 Danio rerio 30.40 6.00e-46 176.00
IUUC-Dno-029225 Dasypus novemcinctus 29.74 5.00e-41 159.00
IUUC-Dor-031082 Dipodomys ordii 29.46 6.00e-17 79.70
IUUC-Dse-031308 Dothistroma septosporum 39.83 3.00e-90 323.00
IUUC-Dme-032189 Drosophila melanogaster 27.86 6.00e-37 146.00
IUUC-Ete-032247 Echinops telfairi 29.17 7.00e-34 135.00
IUUC-Eca-034285 Equus caballus 29.82 2.00e-38 150.00
IUUC-Eeu-035322 Erinaceus europaeus 27.66 3.00e-31 127.00
IUUC-Fca-036114 Felis catus 30.48 5.00e-40 156.00
IUUC-Fal-036891 Ficedula albicollis 28.02 2.00e-31 127.00
IUUC-Fox-037965 Fusarium oxysporum 37.75 2.00e-82 297.00
IUUC-Fso-038244 Fusarium solani 37.47 4.00e-81 293.00
IUUC-Gmo-039040 Gadus morhua 30.13 5.00e-47 179.00
IUUC-Ggr-040093 Gaeumannomyces graminis 32.28 2.00e-61 227.00
IUUC-Gga-040610 Gallus gallus 28.85 2.00e-42 164.00
IUUC-Gac-042117 Gasterosteus aculeatus 31.79 1.00e-47 182.00
IUUC-Gma-043756 Glycine max 31.89 2.00e-49 187.00
IUUC-Ggo-045179 Gorilla gorilla 29.52 2.00e-37 147.00
IUUC-Hsa-046114 Homo sapiens 29.52 1.00e-36 145.00
IUUC-Hvu-047331 Hordeum vulgare 29.40 2.00e-41 161.00
IUUC-Itr-048275 Ictidomys tridecemlineatus 29.96 2.00e-40 157.00
IUUC-Kpa-049304 Komagataella pastoris 56.96 2.00e-151 526.00
IUUC-Lch-050655 Latimeria chalumnae 29.11 4.00e-30 123.00
IUUC-Lpe-051675 Leersia perrieri 28.69 4.00e-45 174.00
IUUC-Loc-052868 Lepisosteus oculatus 29.69 1.00e-45 174.00
IUUC-Lma-053258 Leptosphaeria maculans 40.98 1.00e-89 323.00
IUUC-Laf-053993 Loxodonta africana 29.89 4.00e-39 153.00
IUUC-Mcc-055128 Macaca mulatta 24.83 6.00e-20 89.40
IUUC-Meu-056501 Macropus eugenii 29.36 7.00e-30 122.00
IUUC-Mor-057114 Magnaporthe oryzae 36.85 8.00e-78 282.00
IUUC-Mpo-057463 Magnaporthe poae 39.07 7.00e-28 114.00
IUUC-Mtr-058367 Medicago truncatula 31.02 9.00e-44 169.00
IUUC-Mla-059107 Melampsora laricipopulina 30.17 4.00e-46 177.00
IUUC-Mga-059745 Meleagris gallopavo 29.29 9.00e-43 165.00
IUUC-Mvi-060362 Microbotryum violaceum 31.19 1.00e-50 191.00
IUUC-Mdo-062257 Monodelphis domestica 29.30 5.00e-42 163.00
IUUC-Mmu-063546 Mus musculus 29.52 1.00e-39 155.00
IUUC-Mac-065540 Musa acuminata 31.14 3.00e-45 174.00
IUUC-Mpu-066284 Mustela putorius furo 30.18 1.00e-39 155.00
IUUC-Mlu-067241 Myotis lucifugus 29.67 2.00e-38 151.00
IUUC-Nfi-068260 Neosartorya fischeri 41.87 1.00e-95 341.00
IUUC-Ncr-068719 Neurospora crassa 39.04 2.00e-80 290.00
IUUC-Nle-068981 Nomascus leucogenys 29.52 3.00e-36 144.00
IUUC-Opr-071218 Ochotona princeps 27.89 3.00e-34 137.00
IUUC-Ont-071646 Oreochromis niloticus 29.74 2.00e-43 167.00
IUUC-Oan-073453 Ornithorhynchus anatinus 30.55 3.00e-47 180.00
IUUC-Ocu-074008 Oryctolagus cuniculus 29.52 2.00e-39 154.00
IUUC-Oba-075712 Oryza barthii 27.47 7.00e-35 139.00
IUUC-Obr-076721 Oryza brachyantha 29.83 2.00e-44 171.00
IUUC-Ogl-077229 Oryza glaberrima 29.75 4.00e-46 176.00
IUUC-Ogu-078977 Oryza glumaepatula 27.47 2.00e-34 137.00
IUUC-Oin-079683 Oryza indica 30.17 3.00e-46 176.00
IUUC-Olo-080291 Oryza longistaminata 27.64 2.00e-25 107.00
IUUC-Ome-081834 Oryza meridionalis 30.25 2.00e-45 174.00
IUUC-Oni-082507 Oryza nivara 29.26 1.00e-38 151.00
IUUC-Opu-083396 Oryza punctata 29.75 6.00e-45 172.00
IUUC-Oru-085220 Oryza rufipogon 29.26 2.00e-38 151.00
IUUC-Osa-085767 Oryza sativa 30.17 3.00e-46 176.00
IUUC-Ola-087420 Oryzias latipes 29.67 1.00e-44 171.00
IUUC-Olu-087740 Ostreococcus lucimarinus 30.84 3.00e-41 160.00
IUUC-Oga-088264 Otolemur garnettii 28.95 1.00e-36 145.00
IUUC-Oar-089335 Ovis aries 29.61 7.00e-39 152.00
IUUC-Ptr-091320 Pan troglodytes 29.52 1.00e-36 145.00
IUUC-Pan-092833 Papio anubis 29.30 1.00e-36 145.00
IUUC-Psi-093504 Pelodiscus sinensis 29.52 1.00e-40 158.00
IUUC-Pma-094189 Petromyzon marinus 29.07 2.00e-39 154.00
IUUC-Pno-094929 Phaeosphaeria nodorum 40.95 1.00e-91 328.00
IUUC-Ppa-095429 Physcomitrella patens 32.46 1.00e-58 218.00
IUUC-Pfo-096337 Poecilia formosa 28.82 1.00e-45 174.00
IUUC-Pab-097571 Pongo abelii 29.30 2.00e-36 144.00
IUUC-Pop-099977 Populus trichocarpa 30.00 8.00e-47 179.00
IUUC-Pca-100394 Procavia capensis 27.75 4.00e-30 123.00
IUUC-Ppe-101848 Prunus persica 29.26 8.00e-49 185.00
IUUC-Pva-102921 Pteropus vampyrus 30.45 3.00e-18 84.00
IUUC-Pgr-103637 Puccinia graminis 27.17 9.00e-43 166.00
IUUC-Ptt-103781 Puccinia triticina 26.58 4.00e-43 167.00
IUUC-Pte-104135 Pyrenophora teres 41.69 4.00e-90 324.00
IUUC-Pyt-104609 Pyrenophora triticirepentis 40.59 2.00e-89 320.00
IUUC-Rno-105114 Rattus norvegicus 30.26 1.00e-40 158.00
IUUC-Sha-107122 Sarcophilus harrisii 28.45 4.00e-37 147.00
IUUC-Sja-107766 Schizosaccharomyces japonicus 40.43 5.00e-93 332.00
IUUC-Spo-108134 Schizosaccharomyces pombe 41.14 6.00e-95 338.00
IUUC-Ssl-108398 Sclerotinia sclerotiorum 39.48 3.00e-89 320.00
IUUC-Smo-108761 Selaginella moellendorffii 30.56 3.00e-49 187.00
IUUC-Sit-110354 Setaria italica 29.19 2.00e-45 174.00
IUUC-Sly-111023 Solanum lycopersicum 28.20 2.00e-46 177.00
IUUC-Stu-112169 Solanum tuberosum 29.60 6.00e-49 186.00
IUUC-Sar-113596 Sorex araneus 31.35 4.00e-24 103.00
IUUC-Sbi-114193 Sorghum bicolor 28.30 1.00e-43 168.00
IUUC-Sre-115002 Sporisorium reilianum 25.96 6.00e-32 130.00
IUUC-Ssc-116066 Sus scrofa 29.52 4.00e-38 150.00
IUUC-Tgu-117048 Taeniopygia guttata 28.89 7.00e-37 145.00
IUUC-Tni-119820 Tetraodon nigroviridis 30.99 2.00e-45 174.00
IUUC-Tca-121605 Theobroma cacao 29.96 6.00e-45 172.00
IUUC-Tre-121947 Trichoderma reesei 38.15 3.00e-82 296.00
IUUC-Tvi-122481 Trichoderma virens 37.95 2.00e-83 300.00
IUUC-Tae-125861 Triticum aestivum 30.72 2.00e-48 184.00
IUUC-Tur-126586 Triticum urartu 29.98 1.00e-42 164.00
IUUC-Tme-126900 Tuber melanosporum 43.24 5.00e-98 348.00
IUUC-Ttr-129041 Tursiops truncatus 26.27 2.00e-25 107.00
IUUC-Uma-129628 Ustilago maydis 24.35 2.00e-22 98.20
IUUC-Vpa-130260 Vicugna pacos 29.74 3.00e-39 154.00
IUUC-Vvi-131009 Vitis vinifera 30.25 3.00e-48 183.00
IUUC-Xtr-132083 Xenopus tropicalis 31.14 4.00e-44 170.00
IUUC-Xma-133094 Xiphophorus maculatus 29.07 4.00e-46 176.00
IUUC-Yli-134531 Yarrowia lipolytica 43.30 4.00e-94 336.00
IUUC-Zma-135509 Zea mays 28.31 1.00e-44 172.00
Created Date 25-Jun-2017

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