iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Stu-112778

Ensembl Protein ID

PGSC0003DMT400003681

UniProt Accession

M0ZM54; M0ZM54_SOLTU

Protein Name

Ribosome biogenesis protein WDR12 homolog

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
PGSC0003DMG400001452	PGSC0003DMT400003681	PGSC0003DMT400003681

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	9.20e-30	102.7	364	398

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf...sdtllvsGsdDgtikvWDlrtg 33
           H+++++++++   s  +lvs+s+Dg++++WDlrt 
   Q: 364  HSSWISACKWhekSWFHLVSASYDGKVMLWDLRTA 398
           **********9954377***************986 PP

Organism

Solanum tuberosum

Functional Description
(View)

Required for maturation of ribosomal RNAs and formation of the large ribosomal subunit.

Protein Sequence
(Fasta)

MAGMDIDGNV EEAARRVQVR FVTKLKAPFK APPTSIAIPS NLTRLGLSSI VNNLLKAGKD 60
DWNPEPFDFL IDGELVRMSL EEFLLAKGIS AEKILEIEYI RAVAPRKEEE PSLHDDWVSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

GCTGGAATAG CTCAGTTGGT TAGAGCGTGT GGCTGTTAAC CACAAGGTCG GAGGTTCAAG 60
CCCTCCTTCT AGCGTTTTTC TTTTGTTTTG CTCCATTTAT GGACAACAAC AGTTAACCCA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0690--Ribosome biogenesis
KW-0698--rRNA processing
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR012972--NLE
IPR001680--WD40_repeat
IPR019775--WD40_repeat_CS
IPR017986--WD40_repeat_dom
IPR028599--WDR12/Ytm1

PROSITE

PS00678--WD_REPEATS_1
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF08154--NLE
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0005654--C:nucleoplasm
GO:0030687--C:preribosome, large subunit precursor
GO:0043021--F:ribonucleoprotein complex binding
GO:0000466--P:maturation of 5.8S rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)
GO:0000463--P:maturation of LSU-rRNA from tricistronic rRNA transcript (SSU-rRNA, 5.8S rRNA, LSU-rRNA)

KEGG

sot:102587196

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000532	Aegilops tauschii	64.65	6.00e-172	595.00
IUUC-Aml-001997	Ailuropoda melanoleuca	35.59	1.00e-58	219.00
IUUC-Atr-002544	Amborella trichopoda	62.50	1.00e-161	561.00
IUUC-Apl-003981	Anas platyrhynchos	36.68	7.00e-60	223.00
IUUC-Aca-004370	Anolis carolinensis	34.60	2.00e-66	244.00
IUUC-Aly-006455	Arabidopsis lyrata	69.41	0.00e+00	634.00
IUUC-Ath-006669	Arabidopsis thaliana	69.41	2.00e-179	620.00
IUUC-Ago-007864	Ashbya gossypii	32.33	4.00e-48	184.00
IUUC-Acl-008177	Aspergillus clavatus	30.91	3.00e-43	168.00
IUUC-Afl-008617	Aspergillus flavus	29.76	8.00e-41	160.00
IUUC-Afu-008752	Aspergillus fumigatus	30.31	9.00e-40	156.00
IUUC-Ani-009136	Aspergillus nidulans	31.81	1.00e-44	172.00
IUUC-Ame-011432	Astyanax mexicanus	36.12	8.00e-72	263.00
IUUC-Bta-012829	Bos taurus	34.61	2.00e-60	225.00
IUUC-Bdi-014351	Brachypodium distachyon	64.22	2.00e-165	574.00
IUUC-Bol-016514	Brassica oleracea	70.28	4.00e-173	599.00
IUUC-Bra-016988	Brassica rapa	70.05	4.00e-173	599.00
IUUC-Cel-018569	Caenorhabditis elegans	25.52	4.00e-27	114.00
IUUC-Cja-019468	Callithrix jacchus	35.56	1.00e-58	219.00
IUUC-Cfa-020471	Canis familiaris	34.13	2.00e-57	215.00
IUUC-Cpo-022260	Cavia porcellus	36.04	5.00e-61	227.00
IUUC-Cre-022614	Chlamydomonas reinhardtii	37.69	4.00e-67	247.00
IUUC-Csa-023989	Chlorocebus sabaeus	35.32	2.00e-58	218.00
IUUC-Cho-024426	Choloepus hoffmanni	33.54	1.00e-44	172.00
IUUC-Cin-025789	Ciona intestinalis	30.09	1.00e-52	199.00
IUUC-Cne-027063	Cryptococcus neoformans	26.94	8.00e-33	133.00
IUUC-Dre-027907	Danio rerio	35.65	3.00e-70	257.00
IUUC-Dno-029225	Dasypus novemcinctus	34.61	8.00e-60	223.00
IUUC-Dor-031082	Dipodomys ordii	26.89	2.00e-33	135.00
IUUC-Dse-031308	Dothistroma septosporum	31.62	3.00e-44	171.00
IUUC-Dme-032189	Drosophila melanogaster	31.15	1.00e-50	192.00
IUUC-Ete-032247	Echinops telfairi	31.98	1.00e-52	199.00
IUUC-Eca-034285	Equus caballus	35.08	4.00e-60	224.00
IUUC-Eeu-035322	Erinaceus europaeus	31.68	9.00e-50	189.00
IUUC-Fca-036114	Felis catus	34.84	2.00e-59	221.00
IUUC-Fal-036891	Ficedula albicollis	36.53	3.00e-55	207.00
IUUC-Fso-038244	Fusarium solani	26.22	6.00e-33	134.00
IUUC-Gmo-039040	Gadus morhua	36.28	2.00e-71	261.00
IUUC-Ggr-040093	Gaeumannomyces graminis	25.58	1.00e-28	119.00
IUUC-Gga-040610	Gallus gallus	34.84	1.00e-62	233.00
IUUC-Gac-042117	Gasterosteus aculeatus	37.23	9.00e-71	259.00
IUUC-Gma-043967	Glycine max	70.00	0.00e+00	630.00
IUUC-Ggo-045179	Gorilla gorilla	35.32	3.00e-59	221.00
IUUC-Hsa-046114	Homo sapiens	35.32	1.00e-58	219.00
IUUC-Hvu-047331	Hordeum vulgare	64.74	1.00e-148	518.00
IUUC-Itr-048275	Ictidomys tridecemlineatus	35.08	7.00e-61	226.00
IUUC-Lch-050655	Latimeria chalumnae	35.45	2.00e-50	191.00
IUUC-Lpe-051675	Leersia perrieri	64.29	4.00e-169	586.00
IUUC-Loc-052868	Lepisosteus oculatus	35.56	1.00e-68	252.00
IUUC-Laf-053993	Loxodonta africana	34.37	6.00e-60	223.00
IUUC-Mcc-055128	Macaca mulatta	30.31	4.00e-39	154.00
IUUC-Meu-056501	Macropus eugenii	36.45	5.00e-52	197.00
IUUC-Mtr-058367	Medicago truncatula	66.21	2.00e-170	590.00
IUUC-Mla-059107	Melampsora laricipopulina	27.93	1.00e-38	152.00
IUUC-Mga-059745	Meleagris gallopavo	35.82	8.00e-61	226.00
IUUC-Mvi-060362	Microbotryum violaceum	26.42	2.00e-35	142.00
IUUC-Mdo-062257	Monodelphis domestica	35.56	5.00e-65	240.00
IUUC-Mmu-063546	Mus musculus	33.89	4.00e-59	221.00
IUUC-Mac-065540	Musa acuminata	64.71	6.00e-167	579.00
IUUC-Mpu-066284	Mustela putorius furo	34.83	2.00e-60	225.00
IUUC-Mlu-067241	Myotis lucifugus	35.08	1.00e-60	226.00
IUUC-Nfi-068260	Neosartorya fischeri	31.22	2.00e-42	166.00
IUUC-Nle-068981	Nomascus leucogenys	34.84	5.00e-58	217.00
IUUC-Opr-071218	Ochotona princeps	34.07	3.00e-56	211.00
IUUC-Ont-071646	Oreochromis niloticus	34.84	8.00e-65	239.00
IUUC-Oan-073453	Ornithorhynchus anatinus	35.32	1.00e-70	259.00
IUUC-Ocu-074008	Oryctolagus cuniculus	35.08	5.00e-61	227.00
IUUC-Oba-075712	Oryza barthii	54.97	4.00e-132	463.00
IUUC-Obr-076721	Oryza brachyantha	63.27	6.00e-168	582.00
IUUC-Ogl-077229	Oryza glaberrima	63.84	2.00e-168	583.00
IUUC-Ogu-078977	Oryza glumaepatula	54.97	2.00e-132	464.00
IUUC-Oin-079683	Oryza indica	63.62	1.00e-168	585.00
IUUC-Olo-080291	Oryza longistaminata	53.11	8.00e-88	315.00
IUUC-Ome-081834	Oryza meridionalis	64.65	5.00e-169	586.00
IUUC-Oni-082507	Oryza nivara	61.33	5.00e-158	549.00
IUUC-Opu-083396	Oryza punctata	64.30	2.00e-170	590.00
IUUC-Oru-085220	Oryza rufipogon	61.33	3.00e-158	550.00
IUUC-Osa-085767	Oryza sativa	63.62	1.00e-168	585.00
IUUC-Ola-087420	Oryzias latipes	36.28	2.00e-71	261.00
IUUC-Olu-087740	Ostreococcus lucimarinus	34.89	3.00e-64	237.00
IUUC-Oga-088264	Otolemur garnettii	34.37	6.00e-59	220.00
IUUC-Oar-089335	Ovis aries	34.61	1.00e-60	225.00
IUUC-Ptr-091320	Pan troglodytes	35.32	1.00e-58	219.00
IUUC-Pan-092833	Papio anubis	35.56	1.00e-58	219.00
IUUC-Psi-093504	Pelodiscus sinensis	35.00	2.00e-60	224.00
IUUC-Pma-094189	Petromyzon marinus	37.05	2.00e-64	238.00
IUUC-Ppa-095429	Physcomitrella patens	51.96	2.00e-128	451.00
IUUC-Pfo-096337	Poecilia formosa	35.08	1.00e-70	258.00
IUUC-Pab-097571	Pongo abelii	35.32	2.00e-58	218.00
IUUC-Pop-099977	Populus trichocarpa	72.11	0.00e+00	647.00
IUUC-Pca-100394	Procavia capensis	33.58	8.00e-51	192.00
IUUC-Ppe-101848	Prunus persica	69.25	0.00e+00	640.00
IUUC-Pva-102921	Pteropus vampyrus	32.00	5.00e-25	107.00
IUUC-Pgr-103637	Puccinia graminis	27.14	2.00e-37	148.00
IUUC-Ptt-103781	Puccinia triticina	26.82	4.00e-37	147.00
IUUC-Rno-105114	Rattus norvegicus	33.65	6.00e-59	220.00
IUUC-Sha-107122	Sarcophilus harrisii	36.19	8.00e-63	233.00
IUUC-Sja-107766	Schizosaccharomyces japonicus	27.33	2.00e-41	161.00
IUUC-Spo-108134	Schizosaccharomyces pombe	30.07	7.00e-40	157.00
IUUC-Ssl-108398	Sclerotinia sclerotiorum	30.40	3.00e-46	178.00
IUUC-Smo-108720	Selaginella moellendorffii	49.41	1.00e-118	418.00
IUUC-Sit-110354	Setaria italica	64.42	2.00e-169	587.00
IUUC-Sly-111178	Solanum lycopersicum	96.86	0.00e+00	817.00
IUUC-Sar-113596	Sorex araneus	32.15	2.00e-44	172.00
IUUC-Sbi-114193	Sorghum bicolor	63.66	4.00e-162	563.00
IUUC-Sre-115002	Sporisorium reilianum	31.25	3.00e-22	98.60
IUUC-Ssc-116066	Sus scrofa	34.84	3.00e-60	224.00
IUUC-Tgu-117048	Taeniopygia guttata	36.68	2.00e-59	221.00
IUUC-Tsy-119573	Tarsius syrichta	25.18	8.00e-24	103.00
IUUC-Tni-119820	Tetraodon nigroviridis	36.52	7.00e-68	249.00
IUUC-Tca-121605	Theobroma cacao	73.06	0.00e+00	658.00
IUUC-Tre-121947	Trichoderma reesei	27.15	2.00e-36	145.00
IUUC-Tvi-122481	Trichoderma virens	26.24	1.00e-35	143.00
IUUC-Tae-125861	Triticum aestivum	64.88	1.00e-172	598.00
IUUC-Tur-126586	Triticum urartu	64.99	1.00e-157	548.00
IUUC-Tme-126900	Tuber melanosporum	32.59	4.00e-52	197.00
IUUC-Ttr-129041	Tursiops truncatus	30.31	6.00e-44	170.00
IUUC-Vpa-130260	Vicugna pacos	34.84	2.00e-60	225.00
IUUC-Vvi-131009	Vitis vinifera	76.66	0.00e+00	703.00
IUUC-Xtr-132083	Xenopus tropicalis	35.32	3.00e-64	238.00
IUUC-Xma-133094	Xiphophorus maculatus	34.61	1.00e-69	255.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence