iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Details
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-007525

UUCD1 version

UUC-ArT-00450

Ensembl Protein ID

AT4G12560.3

UniProt Accession

Q9SU30; Q0WNU7; CPR30_ARATH

Genbank Protein ID

CAB41726.1; CAB78299.1; AEE83147.1; AEE83148.1; ANM66283.1; BAF01202.1

Protein Name

F-box protein CPR30; Protein CONSTITUTIVE EXPRESSER OF PR GENES 30

Genbank Nucleotide ID

AL049730; AL161534; CP002687; CP002687; CP002687; AK229339

Gene Name

CPR30; At4g12560; T1P17.150

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT4G12560	AT4G12560.3	AT4G12560.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Reviewed

Details

Family	Domain	References (PMIDs)
E3 adaptor/Cullin RING/SCF/F-box	F-box	19682297

Reviewed

Classification

Family	Identity	E-value	Score	Source Orthology
E3 adaptor/Cullin RING/SCF/F-box	24.68	2.00e-17	77.40	IUUC-Ots-000048

Organism

Arabidopsis thaliana

Functional Description
(View)

Component of SCF(ASK-cullin-F-box) E3 ubiquitin ligase complexes, which may mediate the ubiquitination and subsequent proteasomal degradation of target proteins (By similarity). Regulates negatively both salicylic acid (SA)-dependent and SA-independent defense signaling.

Protein Sequence
(Fasta)

MATIPMDIVN DIFLRLPAKT LVRCRALSKP CYHLINDPDF IESHLHRVLQ TGDHLMILLR 60
GALRLYSVDL DSLDSVSDVE HPMKRGGPTE VFGSSNGLIG LSNSPTDLAV FNPSTRQIHR 120

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Nucleotide Sequence
(Fasta)

ATAAAAAACA TTATCTGAAA AACCTAACCG ACATCTCTCC TCCAACCACT GTGTAAAAAG 60
CACTCAAATC ACACTTTATC TTCTCCGTCA CATTTTCCCG AGAAACAAAA AAAAAATCTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0381--Hypersensitive response
KW-0539--Nucleus
KW-0611--Plant defense
KW-1185--Reference proteome
KW-0833--Ubl conjugation pathway

Interpro

IPR006527--F-box-assoc_dom_typ1
IPR017451--F-box-assoc_interact_dom
IPR001810--F-box_dom

PROSITE

PS50181--FBOX

Pfam

PF00646--F-box
PF07734--FBA_1

SMART

SM00256--FBOX

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005634--C:nucleus
GO:0004842--F:ubiquitin-protein transferase activity
GO:0031348--P:negative regulation of defense response
GO:0042177--P:negative regulation of protein catabolic process
GO:0009626--P:plant-type hypersensitive response
GO:0031146--P:SCF-dependent proteasomal ubiquitin-dependent protein catabolic process

KEGG

ath:AT4G12560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000127	Aegilops tauschii	24.13	8.00e-09	55.10
IUUC-Aly-006102	Arabidopsis lyrata	94.69	0.00e+00	675.00
IUUC-Bdi-014480	Brachypodium distachyon	23.29	2.00e-16	79.70
IUUC-Bol-016596	Brassica oleracea	87.17	0.00e+00	684.00
IUUC-Bra-016667	Brassica rapa	84.67	0.00e+00	676.00
IUUC-Cja-019808	Callithrix jacchus	25.37	1.20e+00	26.20
IUUC-Dre-027973	Danio rerio	35.14	5.80e-01	27.30
IUUC-Dor-030408	Dipodomys ordii	31.63	1.50e-01	31.60
IUUC-Eeu-034678	Erinaceus europaeus	29.41	4.10e+00	26.60
IUUC-Gma-043754	Glycine max	36.63	4.00e-59	221.00
IUUC-Laf-054040	Loxodonta africana	28.57	1.70e+00	25.40
IUUC-Mpo-057331	Magnaporthe poae	30.00	2.10e-02	31.60
IUUC-Mtr-057739	Medicago truncatula	36.58	3.00e-61	228.00
IUUC-Mpu-065694	Mustela putorius furo	27.27	2.00e-03	36.60
IUUC-Ncr-068868	Neurospora crassa	34.69	4.10e-02	32.30
IUUC-Oba-075275	Oryza barthii	25.97	3.00e-22	99.40
IUUC-Obr-076542	Oryza brachyantha	23.76	1.00e-13	70.50
IUUC-Ogl-076999	Oryza glaberrima	25.97	2.00e-22	100.00
IUUC-Ogu-078262	Oryza glumaepatula	24.04	1.00e-08	54.70
IUUC-Oin-079851	Oryza indica	27.52	5.00e-15	75.10
IUUC-Olo-080435	Oryza longistaminata	26.24	3.00e-22	99.40
IUUC-Oni-082603	Oryza nivara	26.37	4.00e-22	99.40
IUUC-Opu-083922	Oryza punctata	24.36	3.00e-11	62.00
IUUC-Oru-084979	Oryza rufipogon	25.97	1.00e-22	100.00
IUUC-Osa-086023	Oryza sativa	25.97	1.00e-22	100.00
IUUC-Pab-097606	Pongo abelii	31.37	6.40e-02	32.70
IUUC-Pop-099343	Populus trichocarpa	44.03	3.00e-78	285.00
IUUC-Ppe-102037	Prunus persica	37.56	2.00e-72	265.00
IUUC-Pva-103062	Pteropus vampyrus	28.57	1.20e+00	25.80
IUUC-Sit-110556	Setaria italica	23.84	5.00e-10	59.30
IUUC-Sly-111548	Solanum lycopersicum	35.67	8.00e-50	189.00
IUUC-Stu-112748	Solanum tuberosum	34.44	3.00e-56	211.00
IUUC-Sbi-114741	Sorghum bicolor	26.40	1.00e-14	74.70
IUUC-Tca-121319	Theobroma cacao	50.24	2.00e-103	368.00
IUUC-Tae-123165	Triticum aestivum	26.21	2.00e-15	76.30
IUUC-Vvi-131410	Vitis vinifera	28.85	9.00e-24	103.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence