iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
GLYMA06G01180	GLYMA06G01180.1	GLYMA06G01180.1
GLYMA06G01180	GLYMA06G01180.4	GLYMA06G01180.4
GLYMA06G01180	GLYMA06G01180.3	GLYMA06G01180.3

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/PHD	3.60e-09	38.3	141	189

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/PHD

   S: 3    vClvCgeggedekslveCekCrewfHpaClklsveeelpnsekwiCpkCrs 53
           +C  C+ +++ ++ +v+Ce C++wfHpaC  ++vee ++ ++ ++C++C++
   Q: 141  YC-KCEMPYNPDDLMVQCEGCTDWFHPACIDMTVEEAKRLDH-FFCESCSA 189
           78.7*****************************999999998.******86 PP

Organism

Glycine max

Protein Sequence
(Fasta)

MAKPKAPRRT LESYSVKHIS KTIRAGDCIL MRPSDPSKPS YVARIERIEA DARGANVKIH 60
VRWYYRPEES IGGRRQFHGS KEVFLSDHFD VQSADTIEAK CTVHSFKSYT KLDAVGNDDF 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CCTGTAGGTC AATGAACGTT GATAACAACG TCGGCCCACC ATTTTTCCCT GTTCAGCGAT 60
GCACTCAAAC AAAAAAGTGT GTTACACAGT TTTTACAAAT AAAAAATAAA AAAGGCTTAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001025--BAH_dom
IPR019786--Zinc_finger_PHD-type_CS
IPR011011--Znf_FYVE_PHD
IPR001965--Znf_PHD
IPR019787--Znf_PHD-finger
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS51038--BAH
PS01359--ZF_PHD_1
PS50016--ZF_PHD_2

Pfam

PF01426--BAH
PF00628--PHD

SMART

SM00439--BAH
SM00249--PHD

Gene Ontology

GO:0000785--C:chromatin
GO:0005677--C:chromatin silencing complex
GO:0003682--F:chromatin binding
GO:0000976--F:transcription regulatory region sequence-specific DNA binding
GO:0008270--F:zinc ion binding
GO:0006342--P:chromatin silencing
GO:0031507--P:heterochromatin assembly

KEGG

gmx:100787968

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005443	Arabidopsis lyrata	73.24	3.00e-96	343.00
IUUC-Ath-006906	Arabidopsis thaliana	71.83	1.00e-94	338.00
IUUC-Bdi-015071	Brachypodium distachyon	67.12	4.00e-89	320.00
IUUC-Bol-015574	Brassica oleracea	71.03	7.00e-94	336.00
IUUC-Bra-017900	Brassica rapa	71.96	4.00e-94	337.00
IUUC-Cne-026894	Cryptococcus neoformans	43.08	4.00e-09	56.60
IUUC-Hvu-047723	Hordeum vulgare	66.21	2.00e-83	301.00
IUUC-Lpe-051138	Leersia perrieri	68.90	1.00e-89	322.00
IUUC-Mor-057044	Magnaporthe oryzae	36.36	4.00e-05	43.10
IUUC-Mtr-058621	Medicago truncatula	88.53	3.00e-118	417.00
IUUC-Oba-075855	Oryza barthii	68.25	6.00e-90	323.00
IUUC-Ogl-077547	Oryza glaberrima	68.10	1.00e-84	305.00
IUUC-Pno-094853	Phaeosphaeria nodorum	38.89	2.00e-06	48.10
IUUC-Pop-098853	Populus trichocarpa	84.26	2.00e-112	397.00
IUUC-Pyt-104466	Pyrenophora triticirepentis	37.04	5.00e-06	46.20
IUUC-Tca-121689	Theobroma cacao	91.39	9.00e-118	415.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence