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Basic Information Integrated Annotations

Tag Content
UUCD2 ID IUUC-Ath-006951
UUCD1 version UUC-ArT-00935
Ensembl Protein ID AT1G24530.1
UniProt Accession Q9FYL1; Q9FYL1_ARATH
Genbank Protein ID AAF97963.1; AAK76647.1; AAL85055.1; AEE30544.1
Protein Name F21J9.19; Putative uncharacterized protein At1g24530; Transducin/WD40 repeat-like superfamily protein
Genbank Nucleotide ID AC000103; AY045973; AY079324; CP002684
Gene Name At1g24530; F21J9.19
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
AT1G24530 AT1G24530.1 AT1G24530.1
Annotation
Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 3.70e-32 109.8 194 228
UBD/Beta-Prp 6.00e-60 203.8 194 407
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD

   S: 2    HtdsvtclafsdtllvsGsdDgtikvWDlrtgvll 36
    H+d vt+la sd+++ s s+D+t+k+W+ ++ ++
   Q: 194 HADAVTALAVSDGFIYSVSWDKTLKIWRASDLRCK 228
    99********99****************8888876 PP
   


   UBD/Beta-Prp

   S: 9    hksvitcvkfspdksllatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvw....dls.tgkcvhtlkghedsvlsls 101
    h + +t++++ ++ ++ + s+d+t+k+w++++ + +s++ h+++v+a+ s +g + tgs Dr i+vw + + v tl++h++ v +l+
   Q: 194 HADAVTALAV--SDGFIYSVSWDKTLKIWRASDLRCKESIKAHDDAVNAIAVSTNG-TVYTGSADRRIRVWakptG-EkRHTLVATLEKHKSAVNALA 287
    6778888999..9999***************************************9.9*************54322.22445566778********** PP
   S: 102 fspsgdklvsGshdrtirvwdletgqclee...tlsghdgvvncvvvhpdgnllvsGslDrtvrlWdl...ktgkllrtltgghtdsvyslsfdsng. 192
    ++ +g++l sGs dr i vw+ e + + + l+ghd+++ ++ + +ll sGs+Drtvr+W+ ++ ++l+ l+g ht++v+sl+ +++
   Q: 288 LNDDGSVLFSGSCDRSILVWEREDTSNYMAvrgALRGHDKAILSLFNVS--DLLLSGSADRTVRIWRRgpdSSYSCLEVLSG-HTKPVKSLAAVREKe 382
    ********************9999988888899********99999888..9****************9999********99.*********777777 PP
   S: 193 ....kelvsgsldgtvklwdlqtge 213
    +++sgsldg vk w ++ ++
   Q: 383 lddvVSIISGSLDGEVKCWKVSVTK 407
    88889**************998554 PP
   

Organism Arabidopsis thaliana
Protein Sequence
(Fasta)
MRVISKLFDS DRRRIPKSPK HLDSGESATS SSSLSDVTTG SSSLHSSLSL QTLPSVPSLQ 60
KIPSTTVTVS HSVTSSFKLR ERSLPVTCLA VNGGYLFAVS GHEVSIYDRD MCAHLDTFNG 120
It may take some time, please wait.

Protein Fasta Sequence



>IUUC-Ath-006951|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Nucleotide Sequence
(Fasta)
CCCCAATTCA TTGTGTCTCT CTTTATTTAG CCACACTTTT CCACTTTCCA GCAACGGATG 60
TGACCATTCT CATTTCTTAT AATCATTTAC GTCCAAGTTT CCCACTTATG CACTCACACC 120
It may take some time, please wait.

Nucleotide Fasta Sequence



>IUUC-Ath-006951|E3,WD_repeat;UBD,Beta-Prp|Arabidopsis thaliana
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR020472--G-protein_beta_WD-40_rep
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005886--C:plasma membrane

KEGG ath:AT1G24530
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Atr-002783 Amborella trichopoda 52.70 5.00e-100 357.00
IUUC-Aly-006280 Arabidopsis lyrata 97.37 0.00e+00 737.00
IUUC-Bol-015495 Brassica oleracea 83.92 0.00e+00 630.00
IUUC-Bra-017464 Brassica rapa 84.40 0.00e+00 681.00
IUUC-Gma-043162 Glycine max 64.94 1.00e-128 452.00
IUUC-Mtr-057789 Medicago truncatula 63.69 4.00e-132 463.00
IUUC-Mac-065257 Musa acuminata 52.23 1.00e-96 346.00
IUUC-Olu-087837 Ostreococcus lucimarinus 29.37 4.00e-27 114.00
IUUC-Pop-100092 Populus trichocarpa 68.47 3.00e-138 484.00
IUUC-Ppe-101598 Prunus persica 68.55 5.00e-132 463.00
IUUC-Smo-108708 Selaginella moellendorffii 41.80 5.00e-49 187.00
IUUC-Sly-111566 Solanum lycopersicum 57.06 1.00e-113 402.00
IUUC-Stu-112893 Solanum tuberosum 56.66 3.00e-111 394.00
IUUC-Tca-121847 Theobroma cacao 69.16 1.00e-134 472.00
IUUC-Vvi-130905 Vitis vinifera 64.14 4.00e-129 453.00
Created Date 25-Jun-2017

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