iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Pop-099417

UUCD1 version

Ensembl Protein ID

UniProt Accession

Genbank Protein ID

Protein Name

Zinc finger family protein

Genbank Nucleotide ID

CM000344

Gene Name

POPTRDRAFT_765598; POPTR_0008s07110g

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
POPTR_0008s07110	POPTR_0008s07110.1	POPTR_0008s07110.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	5.10e-07	31.2	71	113

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledfkdg..plvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           C+iCl  f+dg  ++vlp C+H+fh dC+ kw        ++ +CPlCr
   Q: 71   CCICLGVFEDGdrLKVLPqCQHCFHCDCVDKW------LVTQSSCPLCR 113
           ********66644888999*************......**********8 PP

Organism

Populus trichocarpa

Protein Sequence
(Fasta)

MIILIALLSI YARWVCLENT RHNLPSRLPV HHAPRLPPRG LESTIIKALP ITLHKSNLGT 60
SNNGTAVESE CCICLGVFED GDRLKVLPQC QHCFHCDCVD KWLVTQSSCP LCRASIRAES 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

AACTCGACGA AAATGACTTC CAAGTCCGTG GCCGCGCTCT CTTTTATGTA CTGATCGTCG 60
GCTCCATGAT CATCCTTATC GCCCTACTCT CCATCTACGC CCGCTGGGTC TGCCTTGAAA 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

pop:POPTR_0008s07110g

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006564	Arabidopsis lyrata	42.98	5.00e-22	96.30
IUUC-Ath-007010	Arabidopsis thaliana	47.56	2.00e-18	84.30
IUUC-Bra-017408	Brassica rapa	35.43	3.00e-14	70.50
IUUC-Gma-043502	Glycine max	49.23	1.00e-26	111.00
IUUC-Mtr-058498	Medicago truncatula	50.85	3.00e-31	127.00
IUUC-Mac-064429	Musa acuminata	47.62	2.00e-19	87.80
IUUC-Ppe-101813	Prunus persica	47.32	1.00e-23	101.00
IUUC-Sly-110981	Solanum lycopersicum	43.86	1.00e-22	98.20
IUUC-Stu-112860	Solanum tuberosum	49.12	7.00e-25	105.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence