iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-006697

UUCD1 version

UUC-ArT-00553

Ensembl Protein ID

AT2G17730.2

UniProt Accession

Q8GT74; Q8GWW3; NIP2_ARATH

Genbank Protein ID

CAC81898.1; AEC06675.1; BAC43193.1

Protein Name

NEP1-interacting protein 2; RING-H2 finger protein ATL25

Genbank Nucleotide ID

AJ400898; CP002685; AK118593

Gene Name

NIP2; ATL25; At2g17730; T17A5.9

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G17730	AT2G17730.2	AT2G17730.2
AT2G17730	AT2G17730.1	AT2G17730.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein-protein Interaction
iRefIndex	PINA	HINT	Mentha
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	9.60e-06	26.9	196	234

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf...kdgplvlp.CgHvfhadClqkwpglknsss 37
           C++Cl+df   ++ +++lp C H+fh+ C+ +w +l +  s
   Q: 196  CSVCLQDFqlgET-VRSLPhCHHMFHLPCIDNW-LLRHDIS 234
           ********88555.*******************.3333333 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Intrinsic thylakoid membrane protein that fixes RPOT2 on the stromal side of the thylakoid membrane.

Protein Sequence
(Fasta)

MASSSSSSYR FQSGSYPLSS SPSLGNFVER IKDACHFLVS AVLGTIISAI LTFFFALVGT 60
LLGALTGALI GQETESGFIR GAAIGAISGA VFSIEVFESS LDLWKSDESG FGCFLYLIDV 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTCTTCACCT ACAACAAATT CTGGCCATGA AAGCAAACTC ACCCCAAGCT TTAAATGCAA 60
AGTAGCGAAA CATCCCATCC CATCTCCTCC CTCTCTCTCT TAACCACTAA GCAAAAATCC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0025--Alternative splicing
KW-0150--Chloroplast
KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-0934--Plastid
KW-1185--Reference proteome
KW-0793--Thylakoid
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR027367--Gly-zipper_YMGG
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13441--Gly-zipper_YMGG
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0009535--C:chloroplast thylakoid membrane
GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G17730

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005702	Arabidopsis lyrata	97.31	3.00e-94	337.00
IUUC-Bra-017815	Brassica rapa	87.56	3.00e-93	333.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence