iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G25420	AT2G25420.1	AT2G25420.1
AT2G25420	AT2G25420.2	AT2G25420.2
AT2G25420	AT2G25420.4	AT2G25420.4
AT2G25420	AT2G25420.3	AT2G25420.3

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	5.80e-06	27.4	539	571

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf.sd.tllvsGsdDgtikvWDlr 31
           gH  ++tclaf  + + lvs+  Dg++ +W+++
   Q: 539  GHDQKITCLAFsRCfNVLVSSDSDGKLCLWSTK 571
           8**********977899*************976 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MILDEKNRKN LVFLILQFFD EEGYEESLHL LEQDSGVFFD FSYLSNAILN GNWKDADDYL 60
SAFTSPEANT FSRKMFFGLF KLKFSEAPDR SGGSEAVKIF SKDLRRIPVL KDDSFDDLVE 120

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Nucleotide Sequence
(Fasta)

AGGTGAACTT ATCTCTCTGA CTTTGGTCGC TTTCACTACA CTACACTAGA CTGTCCATTA 60
GCGGATTAAA CGAAGACGAC GAGTTAAGCT TTTGCTGACT TGCAAATTTC TCATTCGTCT 120

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Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR024977--Apc4_WD40_dom
IPR006595--CTLH_C
IPR006594--LisH
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50897--CTLH
PS50896--LISH
PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12894--ANAPC4_WD40

SMART

SM00668--CTLH
SM00667--LisH
SM00320--WD40

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-006018	Arabidopsis lyrata	88.62	0.00e+00	1339.00
IUUC-Bol-016333	Brassica oleracea	73.64	0.00e+00	1094.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence