iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

UUCD2 ID

IUUC-Ath-007009

UUCD1 version

UUC-ArT-00269

Ensembl Protein ID

AT2G39720.1

UniProt Accession

O22283; RHC2A_ARATH

Genbank Protein ID

AAC69860.1; AAB87121.1; AEC09711.1; ANM62301.1; AAL67118.1; AAM16172.1; AAM67317.1

Protein Name

Probable E3 ubiquitin-protein ligase RHC2A; RING-H2 finger C2a; RING-H2 zinc finger protein RHC2a; RING-type E3 ubiquitin transferase RHC2A

Genbank Nucleotide ID

AF079186; AC003000; CP002685; CP002685; AY074579; AY094016; AY086492

Gene Name

RHC2A; At2g39720

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT2G39720	AT2G39720.1	AT2G39720.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
Protein Expression/Proteomics

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	1.60e-06	29.4	201	242

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlpCgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+C+e f  k   + +pC+H++h dC+  w         + +CP+Cr
   Q: 201  CAVCKENFvlKSSAREMPCNHIYHPDCILPW------LAIRNSCPVCR 242
           ********7744466799*************......**********8 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Probable E3 ubiquitin-protein ligase that may possess E3 ubiquitin ligase activity in vitro.

Protein Sequence
(Fasta)

MASGSYWCYS CSRFVWVSDS ISCPDCDGGF LELIQEPLDF TPSDSFTTTT TTQHRSPTRF 60
PPPSSSSSTP SASMHADNSP TPTIVTRTRS NRSPNPVIVL RGSAAAPSSD VVSEGLDRSA 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CTCAAATTAA AAGTCAATCA TATCAAATCC CAAATCCTCC CAGATGTTTT TATCATCTTC 60
TTCTTCCTGA AGATTTGATT TCATTTTCCT CTCTTTCAGA TCCCTATTCT CATGGCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR010543--DUF1117
IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF06547--DUF1117
PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0000209--P:protein polyubiquitination
GO:0042787--P:protein ubiquitination involved in ubiquitin-dependent protein catabolic process

KEGG

ath:AT2G39720

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-003131	Amborella trichopoda	46.58	2.00e-62	232.00
IUUC-Aly-005732	Arabidopsis lyrata	88.55	2.00e-131	461.00
IUUC-Bol-015584	Brassica oleracea	70.70	4.00e-119	420.00
IUUC-Bra-017979	Brassica rapa	70.47	4.00e-114	403.00
IUUC-Mtr-057892	Medicago truncatula	48.83	4.00e-70	257.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence