iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Protein-protein Interaction
HINT	Mentha
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 activity/RING/RING	6.10e-07	30.7	134	176

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 activity/RING/RING

   S: 1    CaiCledf..kdgplvlp.CgHvfhadClqkwpglknssskefrCPlCr 46
           Ca+Cl++f  +d +++lp C H+fh dC+  w         + +CPlCr
   Q: 134  CAVCLCEFetEDKLRLLPkCSHAFHMDCIDTW------LLSHSTCPLCR 176
           ********77555999****************......89999*****8 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MKFSRENMKW VFPEIKTTQN FLSPSSLPQE PPLSLRSSAN FDLNSKISPS ILLIIIILSI 60
IFFISGLLHL LVRFLLTPSS RDREDYFDNV TALQGQLQQL FHLHDSGVDQ SFIDTLPVFH 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTATTTATT TTTCCAATTA ATATTTTTGA CATAAATTAA AATTTTCGTA AAACCTGCAG 60
ATTCAAGAAG CAAACCCTTG TTGGTGTAAC TGTTGAATCT TAAATGAAAA TGTCTCTTCT 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-0479--Metal-binding
KW-1185--Reference proteome
KW-0808--Transferase
KW-0812--Transmembrane
KW-1133--Transmembrane helix
KW-0833--Ubl conjugation pathway
KW-0862--Zinc
KW-0863--Zinc-finger

Interpro

IPR001841--Znf_RING
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50089--ZF_RING_2

Pfam

PF13639--zf-RING_2

SMART

SM00184--RING

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0061630--F:ubiquitin protein ligase activity
GO:0008270--F:zinc ion binding
GO:0043161--P:proteasome-mediated ubiquitin-dependent protein catabolic process
GO:0080167--P:response to karrikin

KEGG

ath:AT4G30400

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Atr-002500	Amborella trichopoda	42.64	8.00e-70	256.00
IUUC-Aly-006179	Arabidopsis lyrata	92.13	0.00e+00	670.00
IUUC-Bol-016067	Brassica oleracea	80.62	3.00e-173	600.00
IUUC-Bra-017063	Brassica rapa	80.51	1.00e-162	565.00
IUUC-Gma-043592	Glycine max	48.36	2.00e-80	292.00
IUUC-Lma-052952	Leptosphaeria maculans	59.09	2.00e-11	63.50
IUUC-Mtr-058782	Medicago truncatula	46.52	3.00e-78	285.00
IUUC-Mac-064684	Musa acuminata	46.03	2.00e-62	232.00
IUUC-Pop-099449	Populus trichocarpa	54.75	2.00e-97	348.00
IUUC-Ppe-101557	Prunus persica	50.12	2.00e-82	299.00
IUUC-Sit-109852	Setaria italica	39.64	2.00e-55	209.00
IUUC-Sly-111133	Solanum lycopersicum	46.83	2.00e-81	295.00
IUUC-Sbi-114435	Sorghum bicolor	40.85	2.00e-54	205.00
IUUC-Tca-121042	Theobroma cacao	51.52	1.00e-81	296.00
IUUC-Vvi-130906	Vitis vinifera	51.22	1.00e-85	310.00
IUUC-Zma-135271	Zea mays	47.60	1.00e-52	200.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence