iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

UUCD2 ID

IUUC-Sbi-114738

UUCD1 version

UUC-SoB-01721

Ensembl Protein ID

Sb01g028253.1

UniProt Accession

A0A1B6QLS3; A0A1B6QLS3_SORBI

Genbank Protein ID

KXG38847.1

Protein Name

Uncharacterized protein

Genbank Nucleotide ID

CM000760

Gene Name

SORBI_001G287900

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
Sb01g028253	Sb01g028253.1	Sb01g028253.1

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
DUB/USP	2.20e-75	254.8	1	293

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

DUB/USP

   S: 9    tCYmNSvLQcLsnipelrellle.kkkeklneenpkepkgellkslqklfeelwkskkkavsprellkalkkeaeefsgyeqqDaqEflaflldql 103
           tC++N++LQc++++ +l   l +  ++  +++    +   + ++sl++ ++e    + +++ p+ +++ lk++++ f++  qqDaqEfl++lld+l
   Q: 1    TCFLNCILQCMVHTVPLVLKLRKtDHPDPCPRA---SIGFCCYCSLKQHVNESIRLSGSSFYPEIFINRLKSISSDFKSGVQQDAQEFLRCLLDKL 93
           9****************9999997888888875...7899******************************************************** PP
   S: 104  eeelkkeknkpkeeeeeedkselsdeaeekkkkknkslisdlFqgqlksqikclecdnvssreepfldlslpvpgkeetkkeslqdcLesftkeee 199
           +e+                   +++++ee+ ++k+ s+++++F+g lksq++c+ecd+ s + epfldlsl++++ e     +l d+L+sft++e 
   Q: 94   DEDS-----------------IAPRSSEESSTTKEGSVVKEIFRGCLKSQLRCPECDRCSDKSEPFLDLSLDLNMVE-----TLMDALQSFTNTEL 167
           ****.................345566788999********************************************.....9************* PP
   S: 200  legenkyycekckkkqeaekklklkklPevLilhLkRfsfseeqksrekinkkvefpleLdlspfctspeekqkekkkYeLiavvvHsGslssGHY 295
           +++   + c+ ck+++ +ek +k+++ PevL++hLkRf     ++s++ki +kv++pleLd+++f++s+++ ++ + kY+L++vv H G  +sGHY
   Q: 168  IKD---FMCDGCKSRVSMEKHFKIEQAPEVLVIHLKRF-----TNSESKIWDKVKYPLELDINSFMSSSDD-VSCSFKYDLYGVVEHLGAYGSGHY 254
           *97...********************************.....67889*******************9665.5569******************** PP
   S: 296  vayvknekgkWllfdDskVtevkeeevleetgstaYvlfYkr 337
           v+y+++++ +W++f+D+kV +++ ++ le   + aY+lfY +
   Q: 255  VCYIRSSEADWYKFNDDKVYQCSVDSALE---NAAYLLFYVK 293
           *****************************...9*******87 PP

Organism

Sorghum bicolor

Protein Sequence
(Fasta)

TCFLNCILQC MVHTVPLVLK LRKTDHPDPC PRASIGFCCY CSLKQHVNES IRLSGSSFYP 60
EIFINRLKSI SSDFKSGVQQ DAQEFLRCLL DKLDEDSIAP RSSEESSTTK EGSVVKEIFR 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ACATGTTTTC TTAATTGCAT ACTCCAATGT ATGGTTCACA CAGTTCCTCT TGTATTGAAG 60
CTTCGGAAAA CTGATCATCC AGATCCATGC CCTCGTAAGG ATTCTAGTTC AATCATCACG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0472--Membrane
KW-1185--Reference proteome
KW-0812--Transmembrane
KW-1133--Transmembrane helix

Interpro

IPR001394--Peptidase_C19_UCH
IPR018200--USP_CS
IPR028889--USP_dom

PROSITE

PS00973--USP_2
PS50235--USP_3

Pfam

PF00443--UCH

Gene Ontology

GO:0016021--C:integral component of membrane
GO:0036459--F:thiol-dependent ubiquitinyl hydrolase activity
GO:0016579--P:protein deubiquitination
GO:0006511--P:ubiquitin-dependent protein catabolic process

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000790	Aegilops tauschii	61.94	2.00e-83	303.00
IUUC-Aly-005458	Arabidopsis lyrata	40.19	8.00e-62	231.00
IUUC-Ath-007509	Arabidopsis thaliana	40.19	2.00e-62	233.00
IUUC-Bol-015756	Brassica oleracea	41.08	2.00e-60	226.00
IUUC-Hvu-047665	Hordeum vulgare	63.31	2.00e-109	389.00
IUUC-Mac-065610	Musa acuminata	47.77	6.00e-77	280.00
IUUC-Sit-109910	Setaria italica	72.36	5.00e-113	399.00
IUUC-Tae-124358	Triticum aestivum	63.75	9.00e-111	394.00
IUUC-Tur-126372	Triticum urartu	52.67	8.00e-78	283.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence