iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Basic Information

Integrated Annotations

Tag

Content

iUUCD ID

IUUC-Ath-006625

Ensembl Protein ID

AT1G08190.1

UniProt Accession

P93043; Q9SGE1; VPS41_ARATH

Genbank Protein ID

AAF18239.1; AEE28259.1; AAB60858.1

Protein Name

Vacuolar protein sorting-associated protein 41 homolog

Genbank Nucleotide ID

AC011438; CP002684; U86663

Gene Name

VPS41; At1g08190; T23G18.5

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
AT1G08190	AT1G08190.1	AT1G08190.1

Annotation

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO	ArrayExpress
DNA & RNA Element
TRANSFAC
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	3.10e-07	31.4	97	124

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 2    Htdsvtclaf.sd.tllvsGsdDgtikv 27
           Ht++v++++f ++  ++ s+sdDg++ +
   Q: 97   HTAPVNDINFdTEgEYIGSCSDDGSVVI 124
           **********9778***********987 PP

Organism

Arabidopsis thaliana

Functional Description
(View)

Required for vacuolar assembly and vacuolar traffic.

Protein Sequence
(Fasta)

MAAVPPENGV DGDDEREEEE EDEEEEEEEE EEENGDEAEE EPRLKYQRMG GNVPALLSND 60
AASCIAVAAR MIALGTHDGT VRILDLLGNQ VKEFRAHTAP VNDINFDTEG EYIGSCSDDG 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

TTTTTCTTTG TCGCCTTCCA AATCATTAAT TAAATTTCCA TTTATTTATT TTCTCTGCTG 60
TCATCACCAA TAATTTTAAT TTAATTTTTA CCAAAACCAG AATCAAAATT TTGAACGGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat

Interpro

IPR000547--Clathrin_H-chain/VPS_repeat
IPR011990--TPR-like_helical_dom
IPR016902--VPS41
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
IPR013083--Znf_RING/FYVE/PHD

PROSITE

PS50236--CHCR
PS50082--WD_REPEATS_2

Pfam

PF00637--Clathrin

SMART

SM00299--CLH
SM00320--WD40

Gene Ontology

GO:0033263--C:CORVET complex
GO:0030897--C:HOPS complex
GO:0005770--C:late endosome
GO:0051020--F:GTPase binding
GO:0009630--P:gravitropism
GO:0006623--P:protein targeting to vacuole
GO:0035542--P:regulation of SNARE complex assembly
GO:0042144--P:vacuole fusion, non-autophagic
GO:0016192--P:vesicle-mediated transport

KEGG

ath:AT1G08190

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000207	Aegilops tauschii	63.98	0.00e+00	1166.00
IUUC-Aml-001435	Ailuropoda melanoleuca	35.75	7.00e-157	547.00
IUUC-Atr-002975	Amborella trichopoda	69.04	0.00e+00	1280.00
IUUC-Apl-003254	Anas platyrhynchos	35.55	3.00e-152	531.00
IUUC-Aca-005067	Anolis carolinensis	35.04	2.00e-152	532.00
IUUC-Aly-005839	Arabidopsis lyrata	98.51	0.00e+00	1845.00
IUUC-Ago-007960	Ashbya gossypii	24.46	4.00e-68	252.00
IUUC-Acl-008174	Aspergillus clavatus	22.45	5.00e-63	236.00
IUUC-Afl-008524	Aspergillus flavus	24.09	4.00e-46	180.00
IUUC-Afu-009054	Aspergillus fumigatus	23.51	7.00e-46	179.00
IUUC-Ani-009250	Aspergillus nidulans	23.52	3.00e-40	160.00
IUUC-Ang-009665	Aspergillus niger	22.95	3.00e-59	223.00
IUUC-Aor-010230	Aspergillus oryzae	23.59	8.00e-48	185.00
IUUC-Ate-010464	Aspergillus terreus	23.03	6.00e-37	149.00
IUUC-Ame-011311	Astyanax mexicanus	35.06	1.00e-124	439.00
IUUC-Bgr-012099	Blumeria graminis	25.78	2.00e-50	194.00
IUUC-Bta-013327	Bos taurus	35.41	5.00e-156	544.00
IUUC-Bci-013660	Botrytis cinerea	25.40	6.00e-41	162.00
IUUC-Bdi-014641	Brachypodium distachyon	64.48	0.00e+00	1196.00
IUUC-Bol-015685	Brassica oleracea	91.72	0.00e+00	1722.00
IUUC-Bra-016918	Brassica rapa	90.26	0.00e+00	1709.00
IUUC-Cel-018385	Caenorhabditis elegans	25.75	1.00e-73	270.00
IUUC-Cja-018994	Callithrix jacchus	36.12	8.00e-156	543.00
IUUC-Cfa-020405	Canis familiaris	35.86	2.00e-156	545.00
IUUC-Cpo-022163	Cavia porcellus	35.51	1.00e-154	540.00
IUUC-Cre-022626	Chlamydomonas reinhardtii	35.80	8.00e-35	141.00
IUUC-Csa-023134	Chlorocebus sabaeus	36.09	3.00e-157	548.00
IUUC-Cho-024913	Choloepus hoffmanni	35.98	1.00e-99	357.00
IUUC-Cin-025239	Ciona intestinalis	34.61	4.00e-146	511.00
IUUC-Cgl-026706	Colletotrichum gloeosporioides	24.84	5.00e-41	163.00
IUUC-Cne-026799	Cryptococcus neoformans	35.78	1.00e-162	566.00
IUUC-Cme-027200	Cyanidioschyzon merolae	28.26	7.00e-10	58.90
IUUC-Dre-028115	Danio rerio	34.84	7.00e-155	540.00
IUUC-Dor-030947	Dipodomys ordii	36.82	6.00e-147	514.00
IUUC-Dse-031544	Dothistroma septosporum	26.33	8.00e-46	179.00
IUUC-Dme-031830	Drosophila melanogaster	30.10	9.00e-106	377.00
IUUC-Ete-033051	Echinops telfairi	33.57	2.00e-42	167.00
IUUC-Eca-033501	Equus caballus	35.75	5.00e-157	547.00
IUUC-Eeu-034555	Erinaceus europaeus	35.29	3.00e-80	292.00
IUUC-Fca-035809	Felis catus	35.29	3.00e-155	541.00
IUUC-Fal-037056	Ficedula albicollis	35.67	2.00e-152	532.00
IUUC-Fox-037949	Fusarium oxysporum	24.73	3.00e-41	163.00
IUUC-Fso-038282	Fusarium solani	24.08	2.00e-39	157.00
IUUC-Gmo-038540	Gadus morhua	34.58	7.00e-147	513.00
IUUC-Ggr-039733	Gaeumannomyces graminis	25.44	5.00e-47	183.00
IUUC-Gga-040446	Gallus gallus	35.33	4.00e-151	528.00
IUUC-Gac-041462	Gasterosteus aculeatus	34.69	4.00e-148	518.00
IUUC-Gma-043148	Glycine max	74.74	0.00e+00	1458.00
IUUC-Hsa-047030	Homo sapiens	35.86	4.00e-157	548.00
IUUC-Hvu-047693	Hordeum vulgare	65.39	0.00e+00	1217.00
IUUC-Itr-048318	Ictidomys tridecemlineatus	35.86	9.00e-157	546.00
IUUC-Kpa-049224	Komagataella pastoris	23.92	2.00e-64	240.00
IUUC-Lch-049444	Latimeria chalumnae	35.31	4.00e-150	524.00
IUUC-Lpe-050942	Leersia perrieri	62.95	0.00e+00	1120.00
IUUC-Loc-052260	Lepisosteus oculatus	34.95	1.00e-154	539.00
IUUC-Lma-053173	Leptosphaeria maculans	23.42	3.00e-41	163.00
IUUC-Laf-054185	Loxodonta africana	35.96	3.00e-157	548.00
IUUC-Mcc-054816	Macaca mulatta	35.86	6.00e-157	547.00
IUUC-Meu-056483	Macropus eugenii	36.42	1.00e-47	184.00
IUUC-Mor-056979	Magnaporthe oryzae	24.89	1.00e-48	188.00
IUUC-Mpo-057312	Magnaporthe poae	27.87	3.00e-44	173.00
IUUC-Mtr-057630	Medicago truncatula	73.31	0.00e+00	1418.00
IUUC-Mla-058930	Melampsora laricipopulina	37.36	1.00e-39	155.00
IUUC-Mga-059942	Meleagris gallopavo	35.55	7.00e-151	527.00
IUUC-Mvi-060386	Microbotryum violaceum	37.23	9.00e-157	547.00
IUUC-Mmr-060640	Microcebus murinus	35.74	3.00e-156	545.00
IUUC-Mdo-062934	Monodelphis domestica	32.47	2.00e-122	432.00
IUUC-Mmu-063488	Mus musculus	35.74	3.00e-156	545.00
IUUC-Mac-064975	Musa acuminata	71.69	0.00e+00	1333.00
IUUC-Mpu-065777	Mustela putorius furo	35.74	5.00e-156	544.00
IUUC-Mlu-068052	Myotis lucifugus	35.86	6.00e-157	547.00
IUUC-Nfi-068436	Neosartorya fischeri	23.17	3.00e-46	180.00
IUUC-Ncr-068840	Neurospora crassa	24.92	3.00e-46	180.00
IUUC-Nle-070063	Nomascus leucogenys	35.63	5.00e-154	537.00
IUUC-Opr-070385	Ochotona princeps	33.16	8.00e-91	327.00
IUUC-Ont-072367	Oreochromis niloticus	34.39	1.00e-147	516.00
IUUC-Oan-073085	Ornithorhynchus anatinus	34.80	9.00e-148	516.00
IUUC-Ocu-074672	Oryctolagus cuniculus	35.63	4.00e-156	544.00
IUUC-Oba-075574	Oryza barthii	66.77	0.00e+00	1236.00
IUUC-Obr-076203	Oryza brachyantha	65.21	0.00e+00	1200.00
IUUC-Ogl-077909	Oryza glaberrima	66.77	0.00e+00	1236.00
IUUC-Ogu-078053	Oryza glumaepatula	66.07	0.00e+00	1229.00
IUUC-Oin-079700	Oryza indica	66.56	0.00e+00	1229.00
IUUC-Olo-080707	Oryza longistaminata	63.82	0.00e+00	1198.00
IUUC-Oni-082754	Oryza nivara	66.52	0.00e+00	1228.00
IUUC-Opu-083854	Oryza punctata	66.74	0.00e+00	1219.00
IUUC-Oru-085071	Oryza rufipogon	66.07	0.00e+00	1228.00
IUUC-Osa-085370	Oryza sativa	66.77	0.00e+00	1236.00
IUUC-Ola-086362	Oryzias latipes	35.29	2.00e-151	528.00
IUUC-Oga-088078	Otolemur garnettii	35.64	3.00e-152	531.00
IUUC-Oar-089679	Ovis aries	35.41	5.00e-156	544.00
IUUC-Ptr-091680	Pan troglodytes	35.86	4.00e-157	548.00
IUUC-Pan-092816	Papio anubis	34.30	3.00e-102	365.00
IUUC-Psi-093890	Pelodiscus sinensis	35.49	4.00e-152	531.00
IUUC-Pma-094654	Petromyzon marinus	36.27	6.00e-163	567.00
IUUC-Pno-095071	Phaeosphaeria nodorum	24.51	5.00e-48	186.00
IUUC-Ppa-095198	Physcomitrella patens	51.88	0.00e+00	938.00
IUUC-Pfo-097465	Poecilia formosa	34.31	4.00e-149	521.00
IUUC-Pab-098686	Pongo abelii	35.86	8.00e-158	550.00
IUUC-Pop-100066	Populus trichocarpa	76.73	0.00e+00	1477.00
IUUC-Pca-100990	Procavia capensis	34.56	9.00e-133	467.00
IUUC-Ppe-101500	Prunus persica	75.29	0.00e+00	1451.00
IUUC-Pva-102809	Pteropus vampyrus	35.63	1.00e-156	546.00
IUUC-Pgr-103404	Puccinia graminis	32.91	1.00e-144	506.00
IUUC-Ptt-103952	Puccinia triticina	31.89	7.00e-140	491.00
IUUC-Pte-104216	Pyrenophora teres	25.50	4.00e-44	173.00
IUUC-Rno-105949	Rattus norvegicus	37.53	2.00e-151	528.00
IUUC-Sce-106462	Saccharomyces cerevisiae	23.93	1.00e-49	191.00
IUUC-Sha-106689	Sarcophilus harrisii	34.87	2.00e-152	532.00
IUUC-Sja-107696	Schizosaccharomyces japonicus	27.89	1.00e-89	323.00
IUUC-Spo-108173	Schizosaccharomyces pombe	29.31	7.00e-108	384.00
IUUC-Smo-109505	Selaginella moellendorffii	54.64	0.00e+00	917.00
IUUC-Sit-110176	Setaria italica	66.35	0.00e+00	1258.00
IUUC-Sly-111840	Solanum lycopersicum	74.07	0.00e+00	1427.00
IUUC-Sar-113073	Sorex araneus	31.81	1.00e-116	413.00
IUUC-Sbi-114139	Sorghum bicolor	67.09	0.00e+00	1244.00
IUUC-Sre-115158	Sporisorium reilianum	34.11	9.00e-148	517.00
IUUC-Ssc-115894	Sus scrofa	35.86	7.00e-158	550.00
IUUC-Tgu-117481	Taeniopygia guttata	35.55	1.00e-152	533.00
IUUC-Tru-118468	Takifugu rubripes	35.76	7.00e-147	513.00
IUUC-Tni-120478	Tetraodon nigroviridis	36.13	2.00e-149	522.00
IUUC-Tca-121780	Theobroma cacao	77.30	0.00e+00	1497.00
IUUC-Tre-121900	Trichoderma reesei	22.33	3.00e-37	150.00
IUUC-Tvi-122343	Trichoderma virens	22.62	3.00e-37	150.00
IUUC-Tae-122785	Triticum aestivum	65.96	0.00e+00	1233.00
IUUC-Tur-126430	Triticum urartu	65.85	0.00e+00	1186.00
IUUC-Tme-127007	Tuber melanosporum	25.48	3.00e-44	173.00
IUUC-Tbe-128073	Tupaia belangeri	35.54	3.00e-129	455.00
IUUC-Ttr-128879	Tursiops truncatus	35.18	4.00e-152	531.00
IUUC-Uma-129356	Ustilago maydis	35.45	6.00e-151	528.00
IUUC-Vda-129676	Verticillium dahliae	23.37	4.00e-39	156.00
IUUC-Vvi-131744	Vitis vinifera	76.79	0.00e+00	1469.00
IUUC-Xtr-132093	Xenopus tropicalis	36.91	1.00e-149	523.00
IUUC-Xma-133199	Xiphophorus maculatus	34.58	6.00e-147	514.00
IUUC-Yli-134385	Yarrowia lipolytica	27.02	4.00e-73	269.00
IUUC-Zma-135567	Zea mays	65.93	0.00e+00	1219.00

Created Date

25-Jun-2017

Functional Description

Protein Fasta Sequence

Nucleotide Fasta Sequence