iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Protein
Gene
Annotation
Classification
Domain Profile
Function
Protein Sequence
Nucleotide Sequence
Keyword
GO
Orthology
TOP

Tag

Content

iUUCD ID

IUUC-Vda-129893

Ensembl Protein ID

EGY19458

UniProt Accession

G2XI10; G2XI10_VERDV

Genbank Protein ID

EGY19458.1

Protein Name

Ribosome assembly protein RRB1

Genbank Nucleotide ID

DS572722

Gene Name

VDAG_09660

Ensembl Information

Ensembl Gene ID	Ensembl Transcript ID	Ensembl Protein ID
VDAG_09660	EGY19458	EGY19458

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	6.90e-23	78.9	306	340

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 1    gHtdsvtclaf..sd.tllvsGsdDgtikvWDlrt 32
           gHt+sv ++++  s+   ++s+s Dgt+++WD+r+
   Q: 306  GHTSSVEDIQWspSEqSVFASASSDGTVRIWDVRS 340
           8***********766788**************986 PP

Organism

Verticillium dahliae

Protein Sequence
(Fasta)

MSKRTADTEM GDGPLKAGDR PEKMDVDGDN EMGEFEDEFE DEFESESEDE ILEAGVDGRP 60
DAEREAEEKG AMEVDQGTFI VGRSKLEPGQ TLAPDLTTYQ MLHNLNTPWP CLSFDLLRDN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

ATGTCGAAGC GAACGGCCGA CACAGAAATG GGCGACGGCC CCCTCAAGGC CGGTGATCGT 60
CCTGAGAAGA TGGACGTTGA CGGCGACAAC GAGATGGGCG AGTTTGAAGA CGAGTTCGAG 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-0539--Nucleus
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR020472--G-protein_beta_WD-40_rep
IPR022052--Histone-bd_RBBP4_N
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION

Pfam

PF12265--CAF1C_H4-bd
PF00400--WD40

PRINTS

PR00320--GPROTEINBRPT

SMART

SM00320--WD40

Gene Ontology

GO:0005730--C:nucleolus
GO:0042254--P:ribosome biogenesis

KEGG

vda:VDAG_09660

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Ata-000677	Aegilops tauschii	36.47	6.00e-63	233.00
IUUC-Aml-002309	Ailuropoda melanoleuca	41.90	1.00e-80	291.00
IUUC-Atr-002461	Amborella trichopoda	37.96	2.00e-72	265.00
IUUC-Aca-004760	Anolis carolinensis	39.57	1.00e-78	285.00
IUUC-Aly-005405	Arabidopsis lyrata	37.33	1.00e-71	261.00
IUUC-Ath-007178	Arabidopsis thaliana	38.32	1.00e-72	265.00
IUUC-Ago-007735	Ashbya gossypii	46.86	4.00e-102	363.00
IUUC-Acl-008294	Aspergillus clavatus	65.74	1.00e-176	610.00
IUUC-Afl-008486	Aspergillus flavus	65.80	7.00e-175	605.00
IUUC-Afu-009019	Aspergillus fumigatus	66.14	4.00e-180	622.00
IUUC-Ani-009465	Aspergillus nidulans	64.93	2.00e-166	576.00
IUUC-Ang-009641	Aspergillus niger	63.75	2.00e-171	593.00
IUUC-Ate-010426	Aspergillus terreus	65.94	2.00e-177	613.00
IUUC-Ame-010856	Astyanax mexicanus	41.11	1.00e-78	284.00
IUUC-Bgr-012258	Blumeria graminis	67.60	8.00e-172	594.00
IUUC-Bta-012437	Bos taurus	40.90	3.00e-80	290.00
IUUC-Bci-013647	Botrytis cinerea	70.56	0.00e+00	652.00
IUUC-Bdi-014728	Brachypodium distachyon	38.48	9.00e-74	268.00
IUUC-Bol-015601	Brassica oleracea	37.81	7.00e-72	262.00
IUUC-Bra-017677	Brassica rapa	46.19	5.00e-41	159.00
IUUC-Cel-018454	Caenorhabditis elegans	35.27	1.00e-66	244.00
IUUC-Cja-018859	Callithrix jacchus	41.26	2.00e-80	291.00
IUUC-Cfa-020912	Canis familiaris	42.08	7.00e-82	295.00
IUUC-Cpo-021368	Cavia porcellus	41.76	3.00e-82	296.00
IUUC-Cre-022850	Chlamydomonas reinhardtii	36.76	3.00e-36	144.00
IUUC-Csa-023599	Chlorocebus sabaeus	41.86	6.00e-80	289.00
IUUC-Cin-025718	Ciona intestinalis	42.79	6.00e-85	305.00
IUUC-Csv-025806	Ciona savignyi	43.79	8.00e-64	235.00
IUUC-Cgl-026766	Colletotrichum gloeosporioides	78.08	0.00e+00	640.00
IUUC-Cne-026781	Cryptococcus neoformans	43.95	1.00e-84	305.00
IUUC-Cme-027129	Cyanidioschyzon merolae	29.38	8.00e-38	149.00
IUUC-Dre-028225	Danio rerio	40.60	2.00e-76	278.00
IUUC-Dno-029792	Dasypus novemcinctus	39.44	1.00e-74	271.00
IUUC-Dor-030773	Dipodomys ordii	37.10	1.00e-28	119.00
IUUC-Dse-031289	Dothistroma septosporum	64.53	3.00e-166	576.00
IUUC-Dme-031676	Drosophila melanogaster	40.27	1.00e-76	278.00
IUUC-Eca-033618	Equus caballus	41.40	4.00e-78	283.00
IUUC-Fca-036102	Felis catus	40.74	1.00e-76	278.00
IUUC-Fox-037899	Fusarium oxysporum	80.89	0.00e+00	783.00
IUUC-Fso-038130	Fusarium solani	81.17	0.00e+00	790.00
IUUC-Gmo-038741	Gadus morhua	40.57	1.00e-74	271.00
IUUC-Ggr-040086	Gaeumannomyces graminis	73.40	0.00e+00	670.00
IUUC-Gac-042243	Gasterosteus aculeatus	39.76	1.00e-77	281.00
IUUC-Gma-044177	Glycine max	37.08	9.00e-71	258.00
IUUC-Ggo-044564	Gorilla gorilla	40.39	3.00e-80	290.00
IUUC-Hsa-046021	Homo sapiens	40.31	5.00e-79	286.00
IUUC-Hvu-047721	Hordeum vulgare	36.70	3.00e-68	250.00
IUUC-Itr-048189	Ictidomys tridecemlineatus	40.41	1.00e-78	285.00
IUUC-Kpa-049271	Komagataella pastoris	47.83	2.00e-107	380.00
IUUC-Lch-049974	Latimeria chalumnae	39.09	2.00e-80	290.00
IUUC-Lpe-051388	Leersia perrieri	35.03	6.00e-62	229.00
IUUC-Lma-053010	Leptosphaeria maculans	67.00	3.00e-176	609.00
IUUC-Laf-054058	Loxodonta africana	41.92	3.00e-83	300.00
IUUC-Mcc-055246	Macaca mulatta	41.63	6.00e-80	289.00
IUUC-Meu-056795	Macropus eugenii	40.60	1.00e-75	275.00
IUUC-Mor-057175	Magnaporthe oryzae	74.75	0.00e+00	683.00
IUUC-Mpo-057388	Magnaporthe poae	70.09	2.00e-173	599.00
IUUC-Mtr-057752	Medicago truncatula	37.56	6.00e-69	253.00
IUUC-Mla-058904	Melampsora laricipopulina	44.62	7.00e-85	305.00
IUUC-Mvi-060525	Microbotryum violaceum	46.54	1.00e-84	305.00
IUUC-Mmr-060905	Microcebus murinus	40.96	5.00e-81	293.00
IUUC-Mmu-063428	Mus musculus	39.78	2.00e-79	287.00
IUUC-Mac-065276	Musa acuminata	39.31	2.00e-70	258.00
IUUC-Mpu-066062	Mustela putorius furo	41.13	2.00e-79	287.00
IUUC-Mlu-068115	Myotis lucifugus	50.22	2.00e-56	210.00
IUUC-Nfi-068512	Neosartorya fischeri	66.33	6.00e-176	608.00
IUUC-Ncr-068629	Neurospora crassa	73.74	0.00e+00	694.00
IUUC-Nle-070016	Nomascus leucogenys	40.83	1.00e-79	288.00
IUUC-Ont-072230	Oreochromis niloticus	39.53	4.00e-75	273.00
IUUC-Oan-072759	Ornithorhynchus anatinus	29.74	6.00e-48	182.00
IUUC-Ocu-074511	Oryctolagus cuniculus	39.57	2.00e-76	277.00
IUUC-Oba-075093	Oryza barthii	35.86	6.00e-61	226.00
IUUC-Obr-076130	Oryza brachyantha	37.79	1.00e-71	262.00
IUUC-Ogl-077397	Oryza glaberrima	37.93	3.00e-71	260.00
IUUC-Ogu-078111	Oryza glumaepatula	37.38	1.00e-61	230.00
IUUC-Oin-079162	Oryza indica	36.09	1.00e-63	235.00
IUUC-Olo-080909	Oryza longistaminata	31.35	7.00e-43	166.00
IUUC-Ome-081768	Oryza meridionalis	36.43	8.00e-63	233.00
IUUC-Oni-082453	Oryza nivara	36.09	7.00e-63	233.00
IUUC-Opu-084133	Oryza punctata	35.21	9.00e-58	216.00
IUUC-Oru-085056	Oryza rufipogon	35.97	6.00e-51	192.00
IUUC-Osa-085735	Oryza sativa	37.93	3.00e-71	260.00
IUUC-Ola-087066	Oryzias latipes	39.20	2.00e-70	258.00
IUUC-Olu-087594	Ostreococcus lucimarinus	37.71	6.00e-67	246.00
IUUC-Oga-087974	Otolemur garnettii	40.83	4.00e-81	293.00
IUUC-Oar-089902	Ovis aries	40.90	4.00e-79	286.00
IUUC-Ptr-090469	Pan troglodytes	39.38	2.00e-75	274.00
IUUC-Pan-092858	Papio anubis	41.63	7.00e-80	289.00
IUUC-Psi-094092	Pelodiscus sinensis	38.01	3.00e-38	150.00
IUUC-Pno-094919	Phaeosphaeria nodorum	65.98	5.00e-161	558.00
IUUC-Ppa-095849	Physcomitrella patens	35.99	4.00e-73	266.00
IUUC-Pfo-096535	Poecilia formosa	40.00	5.00e-75	273.00
IUUC-Pab-098478	Pongo abelii	40.09	5.00e-80	289.00
IUUC-Pop-100032	Populus trichocarpa	38.35	3.00e-72	263.00
IUUC-Pca-100403	Procavia capensis	46.88	6.00e-66	242.00
IUUC-Ppe-101997	Prunus persica	38.44	8.00e-74	269.00
IUUC-Pva-102423	Pteropus vampyrus	41.31	4.00e-81	293.00
IUUC-Pgr-103339	Puccinia graminis	43.19	9.00e-83	299.00
IUUC-Ptt-103937	Puccinia triticina	43.58	1.00e-82	298.00
IUUC-Pte-104051	Pyrenophora teres	66.60	1.00e-166	577.00
IUUC-Pyt-104644	Pyrenophora triticirepentis	67.60	3.00e-169	585.00
IUUC-Rno-106118	Rattus norvegicus	41.85	4.00e-79	286.00
IUUC-Sce-106330	Saccharomyces cerevisiae	44.85	8.00e-98	348.00
IUUC-Sha-106564	Sarcophilus harrisii	41.21	1.00e-62	231.00
IUUC-Sja-107969	Schizosaccharomyces japonicus	45.39	2.00e-97	347.00
IUUC-Spo-108351	Schizosaccharomyces pombe	45.39	3.00e-100	357.00
IUUC-Ssl-108452	Sclerotinia sclerotiorum	72.78	0.00e+00	657.00
IUUC-Smo-109619	Selaginella moellendorffii	37.03	3.00e-75	273.00
IUUC-Sit-109857	Setaria italica	37.56	2.00e-68	251.00
IUUC-Sly-111245	Solanum lycopersicum	36.93	2.00e-65	241.00
IUUC-Stu-112645	Solanum tuberosum	36.49	8.00e-69	252.00
IUUC-Sar-113342	Sorex araneus	40.24	3.00e-72	263.00
IUUC-Sbi-114359	Sorghum bicolor	37.10	1.00e-68	251.00
IUUC-Sre-115098	Sporisorium reilianum	48.51	6.00e-93	333.00
IUUC-Ssc-115496	Sus scrofa	41.22	1.00e-79	288.00
IUUC-Tru-117662	Takifugu rubripes	40.57	6.00e-77	279.00
IUUC-Tni-120564	Tetraodon nigroviridis	38.32	3.00e-62	230.00
IUUC-Tca-121710	Theobroma cacao	38.07	3.00e-75	274.00
IUUC-Tre-122239	Trichoderma reesei	79.31	0.00e+00	740.00
IUUC-Tvi-122589	Trichoderma virens	78.90	0.00e+00	727.00
IUUC-Tae-125574	Triticum aestivum	38.16	2.00e-72	264.00
IUUC-Tur-126135	Triticum urartu	38.20	5.00e-57	213.00
IUUC-Tme-127073	Tuber melanosporum	51.05	3.00e-113	400.00
IUUC-Ttr-128383	Tursiops truncatus	41.81	7.00e-78	282.00
IUUC-Uma-129345	Ustilago maydis	48.17	1.00e-101	361.00
IUUC-Vvi-131067	Vitis vinifera	38.86	6.00e-76	276.00
IUUC-Xtr-132603	Xenopus tropicalis	39.77	3.00e-79	287.00
IUUC-Xma-133149	Xiphophorus maculatus	39.53	3.00e-76	277.00
IUUC-Yli-134459	Yarrowia lipolytica	44.22	6.00e-111	392.00
IUUC-Zma-135548	Zea mays	36.87	3.00e-68	250.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence