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Tag Content
iUUCD ID IUUC-Ogu-078994
Ensembl Protein ID OGLUM06G02880.1
UniProt Accession A0A0E0A4W2; A0A0E0A4W2_9ORYZ
Protein Name Coatomer subunit beta'
Ensembl Information
Ensembl Gene ID Ensembl Transcript ID Ensembl Protein ID
OGLUM06G02880 OGLUM06G02880.1 OGLUM06G02880.1
OGLUM06G02880 OGLUM06G02880.2 OGLUM06G02880.2
Status Unreviewed
Classification
Family E-Value Score Start End
E3 adaptor/Cullin RING/DCX/DWD 1.30e-32 111.5 235 276
UBD/Beta-Prp 1.40e-63 216.0 81 348
Active Site
Position(s) Description Evidence
N/A N/A N/A
Domain Profile

   E3 adaptor/Cullin RING/DCX/DWD
   S: 1    gHtdsvtclaf...sd.tllvsGsdDgtikvWDlrtgvllks 38
           gH+ +v+c+++    d ++l++GsdD t kvWD+ t  ++++
   Q: 235  GHQKGVNCVDYftgGDrPYLITGSDDSTAKVWDYQTKSCVQT 276
           8********966*9778*******************999986 PP
   

   UBD/Beta-Prp
   S: 24   llatgsrdgtikvwdvttgkllrslsgheaevtavkfspdgkilvtgseDrtikvwdlstgkcvhtlkghedsvlslsfspsgdklvsGshdrt 117
            ++++ ++g++ +wd++++++++s++  e +v++ kf++++++ v g++D++i+v++++t + v ++++h+d++++++++p+  +++s s+d  
   Q: 81   KILSSLYSGSVCIWDYQSQTMVKSFEVSELPVRSAKFISRKQWVVAGADDMFIRVYNYNTMDKVKVFEAHTDYIRCVAVHPTLPYVLSSSDDML 174
           479999**************************************************************************************** PP
   S: 118  irvwdletgqcleetlsghdgvvncvvvhpdg.nllvsGslDrtvrlWdlktgkllrtltgghtdsvysls..fdsngkelvsgsldgtvklwd 208
           i++wd+++g+   ++++gh++ v+ v+++p++ n ++s+slDrt ++W+l + +   tl g h++ v++++     ++++l++gs+d+t k+wd
   Q: 175  IKLWDWDKGWMCTQIFEGHSHYVMQVTFNPKDtNTFASASLDRTTKIWSLGSPDPNFTLDG-HQKGVNCVDyfTGGDRPYLITGSDDSTAKVWD 267
           **********9999**********************************************9.*********7445566**************** PP
   S: 209  lqtgecvrtlnghtdnvksvrfspnderlvsgssDgsiriWdlrsgdllktlqlhnssvisvavlsfgdnvlvlgsedskvn 290
           +qt++cv+tl+ght n++ v f+p+  ++++gs+Dg++riW +++  l +tl++  ++v++v +++   + +v g ++++++
   Q: 268  YQTKSCVQTLEGHTHNISAVCFHPELPIIITGSEDGTVRIWHSTTYRLENTLNYGLERVWAVGYMKG-SRRMVIGYDEGTIM 348
           **************************************************************99444.45555555555655 PP
   
Organism Oryza glumaepatula
Functional Description
(View)

Functional Description


     The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
 The coatomer is a cytosolic protein complex that binds to dilysine motifs and reversibly associates with Golgi non-clathrin-coated vesicles, which further mediate biosynthetic protein transport from the ER, via the Golgi up to the trans Golgi network. Coatomer complex is required for budding from Golgi membranes, and is essential for the retrograde Golgi-to-ER transport of dilysine-tagged proteins.
Protein Sequence
(Fasta)
MDLVLSFLPP SSSLPRRARD PIRFASASAS ASPRRRCRGG SLGFSPPRAA RLPRSAHAVA 60
ATMPLRLEIK RKFAQRSERV KILSSLYSGS VCIWDYQSQT MVKSFEVSEL PVRSAKFISR 120
It may take some time, please wait.

Protein Fasta Sequence


>IUUC-Ogu-078994|E3,WD_repeat;UBD,Beta-Prp|Oryza glumaepatula
Please wait for a moment...
Nucleotide Sequence
(Fasta)
ATGGAGTAAT AACAAAAATA AATAAAATTA CGCACAAAAC CCCCTCCTCA TCTTGGTGTT 60
TAGTTTAGTC CTTTCCTTCC TCCCACCCTC CTCGTCGCTC CCCCGCCGAG CTCGCGATCC 120
It may take some time, please wait.

Nucleotide Fasta Sequence


>IUUC-Ogu-078994|E3,WD_repeat;UBD,Beta-Prp|Oryza glumaepatula
Please wait for a moment...
Sequence Source Ensembl
Keyword

KW-0181--Complete proteome
KW-0963--Cytoplasm
KW-0968--Cytoplasmic vesicle
KW-0931--ER-Golgi transport
KW-0333--Golgi apparatus
KW-0472--Membrane
KW-0653--Protein transport
KW-1185--Reference proteome
KW-0677--Repeat
KW-0813--Transport
KW-0853--WD repeat
Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR006692--Coatomer_WD-assoc_reg
IPR016453--COPB2
IPR020472--G-protein_beta_WD-40_rep
IPR011990--TPR-like_helical_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom
PROSITE

PS50082--WD_REPEATS_2
PS50294--WD_REPEATS_REGION
Pfam

PF04053--Coatomer_WDAD
PF00400--WD40
PRINTS

PR00320--GPROTEINBRPT
SMART

SM00320--WD40
Gene Ontology

GO:0030663--C:COPI-coated vesicle membrane
GO:0000139--C:Golgi membrane
GO:0030117--C:membrane coat
GO:0005198--F:structural molecule activity
GO:0006886--P:intracellular protein transport
GO:0016192--P:vesicle-mediated transport
Orthology
iUUCD ID Species Identity E-value Score
IUUC-Ata-000654 Aegilops tauschii 81.50 0.00e+00 1513.00
IUUC-Aml-002154 Ailuropoda melanoleuca 60.12 0.00e+00 1075.00
IUUC-Atr-003090 Amborella trichopoda 77.68 0.00e+00 1456.00
IUUC-Apl-003976 Anas platyrhynchos 60.24 0.00e+00 1080.00
IUUC-Aca-004301 Anolis carolinensis 60.29 0.00e+00 1083.00
IUUC-Aly-006508 Arabidopsis lyrata 80.39 0.00e+00 1509.00
IUUC-Ath-007635 Arabidopsis thaliana 79.48 0.00e+00 1501.00
IUUC-Ago-007914 Ashbya gossypii 45.98 0.00e+00 689.00
IUUC-Acl-008237 Aspergillus clavatus 51.37 0.00e+00 879.00
IUUC-Afl-008535 Aspergillus flavus 49.82 0.00e+00 859.00
IUUC-Afu-008845 Aspergillus fumigatus 51.73 0.00e+00 864.00
IUUC-Ani-009135 Aspergillus nidulans 52.07 0.00e+00 862.00
IUUC-Ang-009654 Aspergillus niger 53.64 0.00e+00 783.00
IUUC-Aor-009939 Aspergillus oryzae 49.71 0.00e+00 890.00
IUUC-Ate-010355 Aspergillus terreus 51.71 0.00e+00 855.00
IUUC-Ame-010922 Astyanax mexicanus 54.76 0.00e+00 926.00
IUUC-Bgr-012249 Blumeria graminis 52.03 0.00e+00 865.00
IUUC-Bta-013579 Bos taurus 60.98 0.00e+00 964.00
IUUC-Bci-013866 Botrytis cinerea 52.77 0.00e+00 870.00
IUUC-Bdi-014102 Brachypodium distachyon 94.54 0.00e+00 1658.00
IUUC-Bol-016271 Brassica oleracea 79.48 0.00e+00 1495.00
IUUC-Bra-017758 Brassica rapa 79.08 0.00e+00 1493.00
IUUC-Cel-018387 Caenorhabditis elegans 53.48 0.00e+00 937.00
IUUC-Cja-019145 Callithrix jacchus 60.05 0.00e+00 1077.00
IUUC-Cfa-020564 Canis familiaris 60.17 0.00e+00 1078.00
IUUC-Cpo-022201 Cavia porcellus 60.12 0.00e+00 1076.00
IUUC-Cre-022938 Chlamydomonas reinhardtii 65.54 0.00e+00 1083.00
IUUC-Csa-023383 Chlorocebus sabaeus 62.98 0.00e+00 803.00
IUUC-Cho-024454 Choloepus hoffmanni 56.85 0.00e+00 891.00
IUUC-Cin-025681 Ciona intestinalis 58.23 0.00e+00 964.00
IUUC-Csv-026012 Ciona savignyi 57.38 0.00e+00 946.00
IUUC-Cgl-026649 Colletotrichum gloeosporioides 47.72 0.00e+00 774.00
IUUC-Cne-026986 Cryptococcus neoformans 47.95 0.00e+00 834.00
IUUC-Cme-027219 Cyanidioschyzon merolae 50.87 0.00e+00 858.00
IUUC-Dre-027846 Danio rerio 60.34 0.00e+00 1079.00
IUUC-Dor-030462 Dipodomys ordii 56.97 0.00e+00 818.00
IUUC-Dse-031268 Dothistroma septosporum 50.79 0.00e+00 855.00
IUUC-Dme-031791 Drosophila melanogaster 56.39 0.00e+00 992.00
IUUC-Ete-033166 Echinops telfairi 55.71 0.00e+00 671.00
IUUC-Eca-034180 Equus caballus 58.60 0.00e+00 1032.00
IUUC-Eeu-035086 Erinaceus europaeus 50.43 4.00e-124 438.00
IUUC-Fca-036265 Felis catus 60.17 0.00e+00 1077.00
IUUC-Fal-037202 Ficedula albicollis 60.98 0.00e+00 1065.00
IUUC-Fox-037711 Fusarium oxysporum 52.09 0.00e+00 824.00
IUUC-Fso-038268 Fusarium solani 51.09 0.00e+00 828.00
IUUC-Gmo-039046 Gadus morhua 61.12 0.00e+00 1064.00
IUUC-Ggr-039863 Gaeumannomyces graminis 50.92 0.00e+00 845.00
IUUC-Gga-041112 Gallus gallus 58.23 0.00e+00 1087.00
IUUC-Gac-041733 Gasterosteus aculeatus 60.25 0.00e+00 1033.00
IUUC-Gma-044126 Glycine max 83.80 0.00e+00 1581.00
IUUC-Ggo-044984 Gorilla gorilla 60.05 0.00e+00 1075.00
IUUC-Hsa-046698 Homo sapiens 60.05 0.00e+00 1076.00
IUUC-Hvu-047669 Hordeum vulgare 90.11 0.00e+00 678.00
IUUC-Itr-048212 Ictidomys tridecemlineatus 60.12 0.00e+00 1073.00
IUUC-Kpa-049265 Komagataella pastoris 50.64 0.00e+00 818.00
IUUC-Lch-050473 Latimeria chalumnae 57.16 0.00e+00 1083.00
IUUC-Lpe-051579 Leersia perrieri 82.72 0.00e+00 1525.00
IUUC-Loc-052675 Lepisosteus oculatus 60.34 0.00e+00 1080.00
IUUC-Lma-053218 Leptosphaeria maculans 51.53 0.00e+00 838.00
IUUC-Laf-053757 Loxodonta africana 58.46 0.00e+00 1072.00
IUUC-Mcc-054859 Macaca mulatta 60.05 0.00e+00 1077.00
IUUC-Meu-056174 Macropus eugenii 52.13 1.00e-109 390.00
IUUC-Mor-057264 Magnaporthe oryzae 50.98 0.00e+00 832.00
IUUC-Mpo-057538 Magnaporthe poae 50.67 0.00e+00 850.00
IUUC-Mtr-058618 Medicago truncatula 82.38 0.00e+00 1529.00
IUUC-Mla-058937 Melampsora laricipopulina 51.30 0.00e+00 852.00
IUUC-Mga-059875 Meleagris gallopavo 58.32 0.00e+00 1085.00
IUUC-Mvi-060240 Microbotryum violaceum 46.78 0.00e+00 857.00
IUUC-Mmr-061261 Microcebus murinus 60.17 0.00e+00 1077.00
IUUC-Mdo-062076 Monodelphis domestica 60.41 0.00e+00 1082.00
IUUC-Mmu-063324 Mus musculus 60.17 0.00e+00 1077.00
IUUC-Mac-064636 Musa acuminata 83.55 0.00e+00 1555.00
IUUC-Mpu-065961 Mustela putorius furo 60.17 0.00e+00 1077.00
IUUC-Mlu-067059 Myotis lucifugus 59.32 0.00e+00 1063.00
IUUC-Nfi-068277 Neosartorya fischeri 51.44 0.00e+00 852.00
IUUC-Ncr-068659 Neurospora crassa 51.84 0.00e+00 866.00
IUUC-Nle-069034 Nomascus leucogenys 58.67 0.00e+00 1077.00
IUUC-Opr-070334 Ochotona princeps 60.38 0.00e+00 965.00
IUUC-Ont-071563 Oreochromis niloticus 60.86 0.00e+00 1070.00
IUUC-Oan-073416 Ornithorhynchus anatinus 60.73 0.00e+00 1050.00
IUUC-Ocu-074522 Oryctolagus cuniculus 60.17 0.00e+00 1073.00
IUUC-Oba-075760 Oryza barthii 99.67 0.00e+00 1800.00
IUUC-Obr-076163 Oryza brachyantha 83.32 0.00e+00 1540.00
IUUC-Ogl-077450 Oryza glaberrima 98.57 0.00e+00 1758.00
IUUC-Oin-079211 Oryza indica 98.44 0.00e+00 1726.00
IUUC-Olo-080731 Oryza longistaminata 98.23 0.00e+00 1741.00
IUUC-Ome-081762 Oryza meridionalis 92.14 0.00e+00 1618.00
IUUC-Oni-082324 Oryza nivara 100.00 0.00e+00 1774.00
IUUC-Opu-083433 Oryza punctata 99.30 0.00e+00 1663.00
IUUC-Oru-084829 Oryza rufipogon 99.89 0.00e+00 1771.00
IUUC-Osa-086026 Oryza sativa 98.89 0.00e+00 1744.00
IUUC-Ola-087245 Oryzias latipes 60.69 0.00e+00 1069.00
IUUC-Olu-087655 Ostreococcus lucimarinus 64.36 0.00e+00 1108.00
IUUC-Oga-088163 Otolemur garnettii 56.34 0.00e+00 1024.00
IUUC-Oar-089842 Ovis aries 60.05 0.00e+00 1077.00
IUUC-Ptr-090501 Pan troglodytes 60.05 0.00e+00 1076.00
IUUC-Pan-092011 Papio anubis 60.05 0.00e+00 1077.00
IUUC-Psi-093308 Pelodiscus sinensis 60.41 0.00e+00 1081.00
IUUC-Pma-094695 Petromyzon marinus 56.96 0.00e+00 947.00
IUUC-Pno-094785 Phaeosphaeria nodorum 58.76 3.00e-103 369.00
IUUC-Ppa-095911 Physcomitrella patens 75.39 0.00e+00 1394.00
IUUC-Pfo-096587 Poecilia formosa 60.74 0.00e+00 1072.00
IUUC-Pab-097926 Pongo abelii 57.99 0.00e+00 1007.00
IUUC-Pop-099634 Populus trichocarpa 82.16 0.00e+00 1524.00
IUUC-Pca-100965 Procavia capensis 59.15 0.00e+00 1038.00
IUUC-Ppe-101470 Prunus persica 82.54 0.00e+00 1577.00
IUUC-Pva-102451 Pteropus vampyrus 55.92 0.00e+00 813.00
IUUC-Pgr-103453 Puccinia graminis 50.86 0.00e+00 862.00
IUUC-Ptt-103868 Puccinia triticina 51.04 0.00e+00 861.00
IUUC-Pte-104274 Pyrenophora teres 52.20 0.00e+00 868.00
IUUC-Pyt-104794 Pyrenophora triticirepentis 52.36 0.00e+00 847.00
IUUC-Rno-105979 Rattus norvegicus 51.42 0.00e+00 775.00
IUUC-Sce-106269 Saccharomyces cerevisiae 46.22 0.00e+00 724.00
IUUC-Sha-106905 Sarcophilus harrisii 58.81 0.00e+00 1083.00
IUUC-Sja-107838 Schizosaccharomyces japonicus 45.39 0.00e+00 740.00
IUUC-Spo-108299 Schizosaccharomyces pombe 44.81 0.00e+00 761.00
IUUC-Smo-108695 Selaginella moellendorffii 80.02 0.00e+00 1372.00
IUUC-Sit-110239 Setaria italica 93.30 0.00e+00 1739.00
IUUC-Sly-111525 Solanum lycopersicum 81.07 0.00e+00 1514.00
IUUC-Stu-112906 Solanum tuberosum 81.31 0.00e+00 1417.00
IUUC-Sar-113472 Sorex araneus 56.29 0.00e+00 761.00
IUUC-Sbi-113801 Sorghum bicolor 81.37 0.00e+00 1517.00
IUUC-Sre-115040 Sporisorium reilianum 50.36 0.00e+00 848.00
IUUC-Ssc-115593 Sus scrofa 60.05 0.00e+00 1076.00
IUUC-Tgu-117239 Taeniopygia guttata 60.48 0.00e+00 1083.00
IUUC-Tru-118025 Takifugu rubripes 60.42 0.00e+00 1065.00
IUUC-Tsy-118824 Tarsius syrichta 56.03 0.00e+00 757.00
IUUC-Tni-120142 Tetraodon nigroviridis 60.44 0.00e+00 1061.00
IUUC-Tca-121613 Theobroma cacao 84.70 0.00e+00 1601.00
IUUC-Tre-122072 Trichoderma reesei 51.48 0.00e+00 856.00
IUUC-Tvi-122546 Trichoderma virens 51.11 0.00e+00 842.00
IUUC-Tae-125292 Triticum aestivum 91.64 0.00e+00 1704.00
IUUC-Tur-126283 Triticum urartu 82.48 0.00e+00 1514.00
IUUC-Tme-127041 Tuber melanosporum 52.70 0.00e+00 882.00
IUUC-Tbe-127770 Tupaia belangeri 57.89 0.00e+00 851.00
IUUC-Ttr-129294 Tursiops truncatus 59.93 0.00e+00 1073.00
IUUC-Uma-129351 Ustilago maydis 49.51 0.00e+00 845.00
IUUC-Vda-129716 Verticillium dahliae 51.97 0.00e+00 875.00
IUUC-Vpa-130037 Vicugna pacos 50.97 6.00e-130 457.00
IUUC-Vvi-131689 Vitis vinifera 86.87 0.00e+00 1540.00
IUUC-Xtr-132633 Xenopus tropicalis 60.05 0.00e+00 1073.00
IUUC-Xma-133347 Xiphophorus maculatus 60.99 0.00e+00 1074.00
IUUC-Yli-134455 Yarrowia lipolytica 49.24 0.00e+00 777.00
IUUC-Zma-135789 Zea mays 90.96 0.00e+00 1701.00
Created Date 25-Jun-2017

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