iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

Single Nucleotide Polymorphisms (SNP)
dbSNP
mRNA Expression
GEO
DNA & RNA Element
TRANSFAC
Post-translational Modifications (PTMs)
dbPPT
Protein Expression/Proteomics
GPMDB

Status

Unreviewed

Classification

Family	E-Value	Score	Start	End
E3 adaptor/Cullin RING/DCX/DWD	1.60e-10	41.7	461	475

Active Site

Position(s)	Description	Evidence
N/A	N/A	N/A

Domain Profile

E3 adaptor/Cullin RING/DCX/DWD

   S: 17   vsGsdDgtikvWDlr 31
           ++G  Dgti vWD++
   Q: 461  ITGHCDGTISVWDMT 475
           89***********87 PP

Organism

Arabidopsis thaliana

Protein Sequence
(Fasta)

MFVKKLVEIA AKKPGGSSSE GLRANDVEPR IALHYGIPSG SHLFAYDPFQ KILAVSTKDG 60
RIKLFGKDQT QALLVSEETS TSRFLEFVQN QGILLNVNSK NQIEVWDLDK KLLSHVHVFN 120

It may take some time, please wait.

Nucleotide Sequence
(Fasta)

CAACACTCAC TTCTTCTTCT TCTTCTTCTT CTTTTTCTTC TTCTTTTTCT TTCTATCTCT 60
CTCTATCTTC TCTCTAATGT CCGAGGAATT GAACCAGTGA TTTGGTGATC TCAAAGACTC 120

It may take some time, please wait.

Sequence Source

Ensembl

Keyword

KW-0181--Complete proteome
KW-1185--Reference proteome
KW-0677--Repeat
KW-0853--WD repeat

Interpro

IPR011042--6-blade_b-propeller_TolB-like
IPR013905--Lgl_C_dom
IPR015943--WD40/YVTN_repeat-like_dom
IPR001680--WD40_repeat
IPR017986--WD40_repeat_dom

Pfam

PF08596--Lgl_C

SMART

SM00320--WD40

Gene Ontology

GO:0005737--C:cytoplasm
GO:0005886--C:plasma membrane
GO:0005096--F:GTPase activator activity
GO:0017137--F:Rab GTPase binding
GO:0019905--F:syntaxin binding
GO:0017157--P:regulation of exocytosis

KEGG

ath:AT4G35560

Orthology

iUUCD ID	Species	Identity	E-value	Score
IUUC-Aly-005994	Arabidopsis lyrata	94.66	0.00e+00	1957.00
IUUC-Bol-015893	Brassica oleracea	82.04	0.00e+00	1654.00
IUUC-Bra-018080	Brassica rapa	71.86	0.00e+00	1336.00
IUUC-Cel-018519	Caenorhabditis elegans	24.46	2.00e-06	48.10
IUUC-Fox-037853	Fusarium oxysporum	22.44	2.00e-15	77.40
IUUC-Fso-038327	Fusarium solani	23.62	2.00e-14	74.70
IUUC-Lpe-051019	Leersia perrieri	38.27	0.00e+00	626.00
IUUC-Lma-053029	Leptosphaeria maculans	24.07	3.00e-11	63.90
IUUC-Mor-057129	Magnaporthe oryzae	22.18	4.00e-13	70.10
IUUC-Mtr-057936	Medicago truncatula	52.29	0.00e+00	985.00
IUUC-Mvi-060348	Microbotryum violaceum	28.57	5.00e-07	50.10
IUUC-Ncr-068624	Neurospora crassa	24.44	6.00e-14	72.80
IUUC-Oba-075817	Oryza barthii	38.65	0.00e+00	652.00
IUUC-Obr-076813	Oryza brachyantha	39.21	0.00e+00	679.00
IUUC-Ogl-077896	Oryza glaberrima	39.70	0.00e+00	675.00
IUUC-Ogu-078104	Oryza glumaepatula	36.56	8.00e-147	513.00
IUUC-Oin-079712	Oryza indica	39.83	0.00e+00	689.00
IUUC-Olo-081006	Oryza longistaminata	33.38	9.00e-80	291.00
IUUC-Ome-081753	Oryza meridionalis	38.48	0.00e+00	642.00
IUUC-Oni-082419	Oryza nivara	38.84	0.00e+00	657.00
IUUC-Opu-083377	Oryza punctata	39.40	0.00e+00	674.00
IUUC-Oru-085098	Oryza rufipogon	38.09	0.00e+00	635.00
IUUC-Osa-085420	Oryza sativa	39.46	0.00e+00	685.00
IUUC-Pno-095147	Phaeosphaeria nodorum	23.40	7.00e-08	52.40
IUUC-Pop-099380	Populus trichocarpa	54.70	0.00e+00	1042.00
IUUC-Ppe-101373	Prunus persica	54.05	0.00e+00	1026.00
IUUC-Pte-104412	Pyrenophora teres	25.21	4.00e-12	66.60
IUUC-Pyt-104770	Pyrenophora triticirepentis	25.62	6.00e-13	69.30
IUUC-Sly-111741	Solanum lycopersicum	47.19	0.00e+00	904.00
IUUC-Sre-115050	Sporisorium reilianum	23.36	3.00e-07	50.80
IUUC-Tre-122192	Trichoderma reesei	22.05	8.00e-15	75.50
IUUC-Tvi-122424	Trichoderma virens	21.65	3.00e-14	73.60
IUUC-Tae-125204	Triticum aestivum	39.49	0.00e+00	679.00

Created Date

25-Jun-2017

Protein Fasta Sequence

Nucleotide Fasta Sequence