PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q38822 P49677 - 9342315 - X 2 Q38825 Q38822 two hybrid 21798944 direct interaction X 2 Q38822 Q570C0 pull down 14617065 direct interaction X 2 Q38822 Q94AI7 two hybrid 22065421 direct interaction X 2 Q38822 O24408 two hybrid 21798944 direct interaction X 2 Q38822 Q8H7F6 two hybrid 21798944 direct interaction X 2 Q38822 F4K2T3 two hybrid 21798944 direct interaction X 2 Q38822 Q570C0 pull down 22171938 direct interaction X 2 Q38822 Q9LW29 pull down 22171938 direct interaction X 2 Q38822 Q570C0 two hybrid 22466420 direct interaction X 2 Q38822 Q9ZR12 two hybrid 22466420 direct interaction X 2 Q38822 Q9LW29 two hybrid 22466420 direct interaction X 2 Q9LRZ0 Q38822 two hybrid 22065421 direct interaction X 2 P14713 Q38822 pull down 14617065 direct interaction X 2 Q38822 Q8H159 affinity chromatography technology 19309453 physical association X 2 Q38822 F4I101 two hybrid 21798944 direct interaction X 2 Q38822 F4JLC8 two hybrid 21798944 direct interaction X 2 Q38822 P49677 two hybrid 21798944 direct interaction X 2 Q8LBK6 Q38822 two hybrid 21798944 direct interaction X 2 P93022 Q38822 pull down 24362628 physical association X 2 Q38822 Q570C0 pull down 20018756 direct interaction X 2 Q38822 Q9LW29 pull down 20018756 direct interaction X 2 Q38822 Q9ZR12 pull down 20018756 direct interaction X 2 Q9ZSY8 Q38822 two hybrid 21734647 physical association X 2 P33077 Q38822 two hybrid 21734647 physical association X 2 Q38825 Q38822 two hybrid array 21798944 physical association X 2 O24407 Q38822 two hybrid 21734647 physical association X 2 O24407 Q38822 two hybrid array 21798944 physical association X 2 Q38826 Q38822 two hybrid 21734647 physical association X 2 Q38829 Q38822 two hybrid array 21798944 physical association X 2 Q84JM4 Q38822 two hybrid array 21798944 physical association X 2 P93022 Q38822 two hybrid 21734647 physical association X 2 P93830 Q38822 two hybrid 21734647 physical association X 2 Q38822 Q570C0 pull down 14617065 physical association X 2 Q38822 Q38822 two hybrid 21734647 physical association X 2 Q38822 Q0WU05 two hybrid 21734647 physical association X 2 Q38822 O24408 two hybrid 21734647 physical association X 2 Q38822 Q9C5X0 two hybrid 21734647 physical association X 2 Q38822 O24408 two hybrid array 21798944 physical association X 2 Q38822 Q8H7F6 two hybrid array 21798944 physical association X 2 D3K0M2 Q38822 two hybrid 21734647 physical association X 2 D3K0M2 Q38822 two hybrid array 21798944 physical association X 2 Q9ZTX8 Q38822 two hybrid 21734647 physical association X 2 P33078 Q38822 two hybrid 21734647 physical association X 2 P93024 Q38822 two hybrid 15889151 physical association X 2 P93024 Q38822 two hybrid 21734647 physical association X 2 P14713 Q38822 pull down 14617065 physical association X 2 Q8RYC8 Q38822 two hybrid 15889151 physical association X 2 Q8RYC8 Q38822 two hybrid 21734647 physical association X 2 O80533 Q38822 two hybrid array 21798944 physical association X 2 O24410 Q38822 two hybrid 21734647 physical association X 2 Q38822 Q9LE10 two hybrid 21245844 physical association X 2 Q38822 Q9FGV1 two hybrid 21734647 physical association X 2 Q38822 Q9XED8 two hybrid 21734647 physical association X 2 Q38822 P49677 two hybrid 21734647 physical association X 2 Q38822 P49678 two hybrid 21734647 physical association X 2 Q38822 Q38827 two hybrid 21734647 physical association X 2 Q38822 Q38830 two hybrid 21734647 physical association X 2 Q38822 Q38832 two hybrid 21734647 physical association X 2 Q38822 Q9C966 two hybrid 21734647 physical association X 2 Q38822 O24409 two hybrid 21734647 physical association X 2 Q38822 Q9XFM0 two hybrid 21734647 physical association X 2 Q38822 Q9M1R4 two hybrid 21734647 physical association X 2 Q38822 P49677 two hybrid array 21798944 physical association X 2 Q38822 P49678 two hybrid array 21798944 physical association X 2 Q38822 P49677 two hybrid 9342315 physical association X 2 Q8LBK6 Q38822 two hybrid array 21798944 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B PHYB IAA3 MI:0096(pull down) 14617065 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_16346 prey bait ARF5 IAA3 MI:0018(two hybrid)|MI:0096(pull down) 15889151,21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_12888|UniProt_8213 bait|bait prey|prey IAA3 TIR1 MI:0096(pull down) 14617065 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_16345 bait prey IAA3 IAA27 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8436 bait prey IAA3 IAA7 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_2726 prey bait IAA3 IAA8 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8425 bait prey IAA3 IAA9 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8426 bait prey IAA3 IAA11 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_2747 prey bait IAA3 IAA14 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8429 bait prey IAA3 IAA13 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8428 bait prey IAA3 IAA12 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8427 bait prey IAA3 ARF6 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8246 prey bait IAA2 IAA3 MI:0096(pull down)|MI:0397(two hybrid array) 21734647,21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_8406|UniProt_2473 bait|bait prey|prey IAA3 MJK13.10 MI:0018(two hybrid) 21245844 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_7943 prey bait IAA1 IAA3 MI:0397(two hybrid array)|MI:0018(two hybrid)|MI:0096(pull down) 21734647,21798944,9342315 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association) (intact)|(intact)|(intact) UniProt_2468|UniProt_8091|UniProt_8388 bait|bait|bait prey|prey|prey IAA3 IAA34 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8440 bait prey IAA18 IAA3 MI:0397(two hybrid array)|MI:0096(pull down) 21734647,21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_1925|UniProt_8433 bait|prey prey|bait IAA3 IAA15 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8430 bait prey F14J9.16 IAA3 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_2080 bait prey IAA3 ARF8 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8291 prey bait IAA3 ARF19 MI:0096(pull down)|MI:0018(two hybrid) 15889151,21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_8353|UniProt_12887 prey|prey bait|bait IAA3 IAA31 MI:0397(two hybrid array)|MI:0096(pull down) 21734647,21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_5728|UniProt_8439 prey|bait bait|prey IAA16 IAA3 MI:0096(pull down)|MI:0397(two hybrid array) 21734647,21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_8431|UniProt_1919 prey|bait bait|prey IAA4 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8423 prey bait IAA3 GRXS16 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_5776 prey bait IAA20 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8435 prey bait ARF7 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8270 bait prey IAA3 IAA28 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8437 bait prey IAA5 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8424 prey bait IAA3 ARF9 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8313 prey bait IAA17 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8432 prey bait IAA3 IAA30 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8438 bait prey IAA19 IAA3 MI:0096(pull down) 21734647 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_8434 prey bait IAA3 TPR3 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_3221 prey bait IAA3 GRXS15 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_6057 prey bait

PPI - HINT Gene A Gene B PMID Method Quality THO5A IAA3 26236497 0018 LC IAA16 IAA3 21734647,21798944 0018,0397 LC,HT IAA18 IAA3 21734647,21798944,21798944 0018,0018,0397 LC,HT IAA19 IAA3 21734647 0018 LC IAA20 IAA3 21734647 0018 LC F14J9.16 IAA3 21798944,21798944 0018,0397 HT IAA4 IAA3 21734647 0018 LC IAA5 IAA3 21734647 0018 LC IAA1 IAA3 21734647,21798944,21798944,9342315 0018,0018,0397,0018 LC,HT IAA2 IAA3 21734647,21798944 0018,0397 LC,HT ARF7 IAA3 21734647,25566309 0018,0018 LC ARF5 IAA3 21734647,15889151,25566309 0018,0018,0018 LC IAA17 IAA3 21734647 0018 LC IAA3 IAA3 21734647 0018 LC IAA3 IAA7 21798944,21798944 0018,0397 HT IAA3 IAA8 21734647 0018 LC IAA3 IAA9 21734647 0018 LC IAA3 IAA11 21798944,21798944 0018,0397 HT IAA3 IAA12 21734647 0018 LC IAA3 IAA13 21734647 0018 LC IAA3 IAA14 21734647 0018 LC IAA3 TIR1 26236497,24591051,22466420 0018,0018,0018 LC IAA3 TPR3 21798944,21798944 0018,0397 HT IAA3 IAA31 21734647,21798944 0018,0397 LC,HT IAA3 GRXS16 21798944,21798944 0018,0397 HT IAA3 GRXS15 21798944,21798944 0018,0397 HT IAA3 ARF19 21734647,15889151 0018,0018 LC IAA3 TPL 22065421 0018 LC IAA3 IAA34 21734647 0018 LC IAA3 IAA15 21734647 0018 LC IAA3 ARF8 21734647,25566309 0018,0018 LC IAA3 MJK13.10 21245844 0018 LC IAA3 TPR2 22065421 0018 LC IAA3 AFB2 22466420 0018 LC IAA3 IAA30 21734647 0018 LC IAA3 ARF9 21734647 0018 LC IAA3 IAA28 21734647 0018 LC IAA3 GRH1 22466420 0018 LC IAA3 IAA27 21734647 0018 LC IAA3 ARF6 21734647,25566309 0018,0018 LC IAA3 ARF4 25566309 0018 LC PHYB IAA3 14617065 0096 LC ARF7 IAA3 24362628 0096 LC IAA3 TIR1 25758811,22171938,14617065,20018756 0096,0096,0096,0096 LC IAA3 UBQ10 19309453 0004 LC IAA3 AFB2 20018756,22171938 0096,0096 LC IAA3 GRH1 20018756 0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q9LRZ0 Q38822 TPR2 IAA3 0.183 22065421 Q9LW29 Q38822 AFB2 IAA3 0.671 20018756,22466420,22171938 Q9M7Q4 Q38822 ABF2 IAA3 0.309 26236497 Q9ZTX9 Q38822 ARF4 IAA3 0.183 25566309 Q9M1R4 Q38822 IAA30 IAA3 0.332 21734647 Q9XFM0 Q38822 IAA28 IAA3 0.332 21734647 Q38822 P33077 IAA3 IAA4 0.332 21734647 Q38822 P14713 IAA3 PHYB 0.454 14617065 Q38822 O24410 IAA3 IAA20 0.332 21734647 Q38822 O24409 IAA3 IAA19 0.332 21734647 Q38822 P93830 IAA3 IAA17 0.332 21734647 Q38822 P33078 IAA3 IAA5 0.332 21734647 Q38829 Q38822 IAA11 IAA3 0.286 21798944 Q38822 Q38822 IAA3 IAA3 0.376 21734647 Q38826 Q38822 IAA8 IAA3 0.332 21734647 Q9C5X0 Q38822 IAA34 IAA3 0.332 21734647 Q8H7F6 Q38822 GRXS16 IAA3 0.286 21798944 Q8LBK6 Q38822 GRXS15 IAA3 0.286 21798944 Q9ZSY8 Q38822 IAA27 IAA3 0.332 21734647 Q9XED8 Q38822 ARF9 IAA3 0.332 21734647 Q38827 Q38822 IAA9 IAA3 0.332 21734647 Q38830 Q38822 IAA12 IAA3 0.332 21734647 Q38831 Q38822 IAA13 IAA3 0.332 21734647 Q38832 Q38822 IAA14 IAA3 0.332 21734647 Q8H174 Q38822 IAA31 IAA3 0.416 21798944,21734647 Q38822 O24407 IAA3 IAA16 0.416 21734647,21798944 Q38822 P93022 IAA3 ARF7 0.454 21734647,25566309 Q9ZTX8 Q38822 ARF6 IAA3 0.454 21734647,25566309 Q570C0 Q38822 TIR1 IAA3 0.941 22171938,25758811,24591051,22466420,26236497,14617065,20018756 Q9FGV1 Q38822 ARF8 IAA3 0.454 21734647,25566309 Q38822 O24408 IAA3 IAA18 0.523 21734647,21798944 Q94AI7 Q38822 TPL IAA3 0.183 22065421 Q9C966 Q38822 IAA15 IAA3 0.183 21734647 Q38822 P49678 IAA3 IAA2 0.416 21734647,21798944 Q38822 O80533 IAA3 F14J9.16 0.126 21798944 Q38822 P49677 IAA3 IAA1 0.671 9342315,21734647,21798944 Q38822 P93024 IAA3 ARF5 0.623 15889151,25566309,21734647 Q38825 Q38822 IAA7 IAA3 0.286 21798944 Q3E7T8 Q38822 UBQ14 IAA3 0.21 19309453 Q84JM4 Q38822 TPR3 IAA3 0.286 21798944 Q8H159 Q38822 UBQ10 IAA3 0.21 19309453 Q8RYC8 Q38822 ARF19 IAA3 0.539 15889151,21734647 Q9LE10 Q38822 MJK13.10 IAA3 0.309 21245844 Q9ZR12 Q38822 GRH1 IAA3 0.523 20018756,22466420