PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants O49484 Q39090 - 12795696 - X 2 O65674 Q39090 - 12795696 - X 2 O81058 Q39090 - 12795696 - X 2 Q39090 Q39255 - 12795696 - X 2 Q39090 O81057 - 12795696 - X 2 Q39090 Q9FHW7 - 12795696 - X 2 O49484 Q39090 two hybrid 23166809 direct interaction X 2 O49484 Q39090 two hybrid 12795696 direct interaction X 2 O49484 Q39090 two hybrid 12795696 direct interaction X 2 O49484 Q39090 two hybrid 12169662 direct interaction X 2 O65674 Q39090 two hybrid 23166809 direct interaction X 2 O65674 Q39090 two hybrid 12795696 direct interaction X 2 O81058 Q39090 two hybrid 12795696 direct interaction X 2 Q39090 Q39255 protein complementation assay 23226441 direct interaction X 2 Q39090 Q39255 two hybrid 23166809 direct interaction X 2 Q39090 O81057 two hybrid 23166809 direct interaction X 2 Q39090 Q39255 two hybrid 10607296 direct interaction X 2 Q39090 Q39255 two hybrid 10607296 direct interaction X 2 Q39090 Q39255 pull down 10607296 direct interaction X 2 Q39090 Q39255 two hybrid 12795696 direct interaction X 2 Q39090 Q39255 two hybrid 12795696 direct interaction X 2 Q39090 O81057 two hybrid 12795696 direct interaction X 2 Q39090 Q39255 two hybrid 15749712 direct interaction X 2 Q39090 Q39255 two hybrid 20458496 direct interaction X 2 Q39090 Q39255 affinity chromatography technology 12724534 physical association X 2 Q39090 Q39255 two hybrid 12169662 direct interaction X 2 Q8L5U0 Q39090 affinity chromatography technology 12724534 physical association X 2 Q00958 Q39090 pull down 18287201 direct interaction X 2 Q00958 Q39090 affinity chromatography technology 18287201 physical association X 2 Q00958 Q39090 two hybrid 18287201 direct interaction X 2 P45432 Q39090 affinity chromatography technology 12724534 physical association X 2 P43255 Q39090 affinity chromatography technology 12724534 physical association X 2 Q9LSX9 Q39090 protein complementation assay 23226441 direct interaction X 2 Q9FVU9 Q39090 affinity chromatography technology 12724534 physical association X 2 Q39090 Q9FHW7 two hybrid 23166809 direct interaction X 2 Q39090 Q9FHW7 two hybrid 10607296 direct interaction X 2 Q39090 Q9FHW7 two hybrid 10607296 direct interaction X 2 Q39090 Q9FHW7 two hybrid 12795696 direct interaction X 2 Q39090 Q9FHW7 two hybrid 12795696 direct interaction X 2 Q39090 Q9FHW7 two hybrid 20458496 direct interaction X 2 Q9LNT9 Q39090 protein complementation assay 23226441 direct interaction X 2 B9DGE3 Q39090 affinity chromatography technology 12724534 physical association X 2 Q9SL93 Q39090 protein complementation assay 23226441 direct interaction X 2 Q39090 anti tag coimmunoprecipitation 12724534 association C 8 O49484 Q39090 two hybrid 12169662 physical association X 2 O49484 Q39090 two hybrid 12795696 physical association X 2 O49484 Q39090 two hybrid 12795696 physical association X 2 O65674 Q39090 two hybrid 12795696 physical association X 2 O81058 Q39090 two hybrid 12795696 physical association X 2 Q39090 Q39255 two hybrid 12169662 physical association X 2 Q39090 O81057 two hybrid 12795696 physical association X 2 Q39090 Q39255 two hybrid 12795696 physical association X 2 Q39090 Q39255 two hybrid 12795696 physical association X 2 Q39090 Q8JZK2 two hybrid 12795696 physical association X 2 Q39090 Q39255 two hybrid 12826617 physical association X 2 Q39090 Q39255 two hybrid 15749712 physical association X 2 Q00958 Q39090 two hybrid 18287201 physical association X 2 Q00958 Q39090 two hybrid 18287201 physical association X 2 Q00958 Q39090 pull down 18287201 direct interaction X 2 Q00958 Q39090 anti tag coimmunoprecipitation 18287201 physical association X 2 Q00958 Q39090 pull down 18287201 physical association X 2 P43291 Q39090 two hybrid 10607296 physical association X 2 P43291 Q39090 two hybrid 10607296 physical association X 2 P43291 Q39090 pull down 10607296 direct interaction X 2 Q39090 Q9FHW7 two hybrid 10607296 physical association X 2 Q39090 Q9FHW7 two hybrid 10607296 physical association X 2 Q39090 Q9FHW7 two hybrid 12169662 physical association X 2 Q39090 Q9FHW7 two hybrid 12795696 physical association X 2 Q39090 Q9FHW7 two hybrid 12795696 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B UFO ASK3 MI:0090(protein complementation assay) 23226441 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16989 prey bait CSN8 UFO MI:0004(affinity chromatography technology)|MI:0007(anti tag coimmunoprecipitation) 12724534 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0914(association) (biogrid)|(intact) BIOGRID_533|UniProt_17435 prey|prey bait|bait UFO SKP1B MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 10607296,12169662,12795696,20458496,23166809 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction) (biogrid)|(intact)|(biogrid)|(biogrid)|(intact)|(intact)|(intact)|(biogrid)|(intact)|(biogrid)|(intact)|(intact)|(biogrid) BIOGRID_4790|UniProt_17714|BIOGRID_19072|BIOGRID_1910|UniProt_193348|UniProt_17716|UniProt_16995|BIOGRID_1908|UniProt_193349|BIOGRID_2293|UniProt_16996|UniProt_17557|BIOGRID_2341 bait|bait|bait|prey|bait|bait|bait|bait|prey|prey|prey|bait|bait prey|prey|prey|bait|prey|prey|prey|prey|bait|bait|bait|prey|prey UFO ASK4 MI:0090(protein complementation assay) 23226441 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16990 prey bait ASK14 UFO MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 12795696,23166809 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association) (biogrid)|(biogrid)|(intact)|(intact) BIOGRID_2321|BIOGRID_19075|UniProt_17059|UniProt_193412 bait|prey|bait|bait prey|bait|prey|prey UFO SKP1A MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0004(affinity chromatography technology)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0090(protein complementation assay)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0007(anti tag coimmunoprecipitation) 10607296,12169662,12724534,12795696,12826617,15749712,20458496,23166809,23226441 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0914(association) (biogrid)|(intact)|(intact)|(biogrid)|(biogrid)|(biogrid)|(biogrid)|(biogrid)|(intact)|(biogrid)|(biogrid)|(intact)|(biogrid)|(intact)|(intact)|(biogrid)|(intact)|(biogrid)|(intact) BIOGRID_2280|UniProt_193329|UniProt_17347|BIOGRID_1909|BIOGRID_15031|BIOGRID_1907|BIOGRID_2626|BIOGRID_15572|UniProt_16976|BIOGRID_19071|BIOGRID_1911|UniProt_12833|BIOGRID_16988|UniProt_17556|UniProt_16977|BIOGRID_4789|UniProt_193330|BIOGRID_2288|UniProt_17435 prey|bait|bait|prey|bait|bait|bait|prey|bait|bait|prey|bait|prey|bait|prey|bait|prey|bait|bait bait|prey|prey|bait|prey|prey|prey|bait|prey|prey|bait|prey|bait|prey|bait|prey|bait|prey|prey UFO ASK9 MI:0090(protein complementation assay) 23226441 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16991 prey bait LFY UFO MI:0412(electrophoretic mobility supershift assay)|MI:0412(electrophoretic mobility supershift assay)|MI:0412(electrophoretic mobility supershift assay)|MI:0412(electrophoretic mobility supershift assay)|MI:0412(electrophoretic mobility supershift assay)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 18287201 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction) (intact)|(intact)|(intact)|(intact)|(intact)|(biogrid)|(biogrid)|(biogrid) UniProt_14020|UniProt_14019|UniProt_14022|UniProt_14021|UniProt_14023|BIOGRID_2827|BIOGRID_2828|BIOGRID_2829 bait|bait|prey|prey|bait|bait|bait|prey prey|prey|bait|bait|prey|prey|prey|bait UFO CSN5A MI:0004(affinity chromatography technology) 12724534 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_534 bait prey ASK11 UFO MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 12169662,12795696,23166809 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(biogrid)|(intact)|(intact)|(biogrid)|(intact)|(intact)|(biogrid)|(intact) BIOGRID_2342|BIOGRID_19073|UniProt_17558|UniProt_193368|BIOGRID_15573|UniProt_193369|UniProt_17016|BIOGRID_2302|UniProt_17015 prey|prey|prey|prey|bait|bait|bait|bait|prey bait|bait|bait|bait|prey|prey|prey|prey|bait SRK2A UFO MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 10607296 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (intact)|(intact)|(intact) UniProt_17715|UniProt_17717|UniProt_17713 prey|bait|prey bait|prey|bait CSN1 UFO MI:0004(affinity chromatography technology)|MI:0007(anti tag coimmunoprecipitation) 12724534 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0914(association) (biogrid)|(intact) BIOGRID_530|UniProt_17435 prey|prey bait|bait UFO CSN4 MI:0004(affinity chromatography technology)|MI:0007(anti tag coimmunoprecipitation) 12724534 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0914(association) (biogrid)|(intact) BIOGRID_532|UniProt_17435 bait|bait prey|prey ASK19 UFO MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 12795696 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (intact)|(biogrid)|(intact) UniProt_17054|BIOGRID_2344|UniProt_193407 prey|prey|prey bait|bait|bait ASK12 UFO MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 12795696,23166809 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact)|(biogrid)|(intact) BIOGRID_2343|UniProt_17028|BIOGRID_19074|UniProt_193381 prey|prey|prey|prey bait|bait|bait|bait

PPI - HINT Gene A Gene B PMID Method Quality ASK11 UFO 12169662,12795696,12711337,23166809 0018,0018,0018,0018 LC ASK12 UFO 12795696,23166809 0018,0018 LC ASK14 UFO 12795696,23166809,12711337 0018,0018,0018 LC ASK19 UFO 12795696 0018 LC ASK3 UFO 23226441 0090 LC SRK2A UFO 10607296,10607296 0096,0018 LC LFY UFO 18287201,18287201,18287201,18287201 0004,0096,0018,0007 LC ASK9 UFO 23226441 0090 LC UFO SKP1A 12711337,23166809,12169662,15749712,10607296,10607296,12795696,12826617,20458496,23226441 0018,0018,0018,0018,0096,0018,0018,0018,0018,0090 LC UFO SKP1B 12169662,10607296,20458496,12795696,23166809 0018,0018,0018,0018,0018 LC UFO ASK4 12711337,23226441 0018,0090 LC CSN8 UFO 12724534,12724534 0004,0007 LC SRK2A UFO 10607296,10607296 0096,0018 LC CSN1 UFO 12724534,12724534 0004,0007 LC LFY UFO 18287201,18287201,18287201,18287201 0004,0096,0018,0007 LC UFO SKP1A 12724534,12724534,10607296,10607296 0004,0007,0096,0018 LC UFO CSN4 12724534,12724534 0004,0007 LC UFO CSN5B 12724534 0007 LC UFO CSN6A 12724534 0007 LC UFO CUL1 12724534,12724534 0004,0007 LC UFO CSN5A 12724534 0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q8JZK2 Q39090 SKL1 UFO 0.183 12795696 Q9LSX9 Q39090 ASK9 UFO 0.309 23226441 Q9LNT9 Q39090 ASK4 UFO 0.523 23226441,12711337 Q39090 P43255 UFO CSN8 0.376 12724534 Q39090 O81057 UFO ASK14 0.623 12795696,12711337,23166809 Q39090 P45432 UFO CSN1 0.376 12724534 Q94AH6 Q39090 CUL1 UFO 0.376 12724534 Q8L5U0 Q39090 CSN4 UFO 0.376 12724534 Q39090 O65674 UFO ASK12 0.454 12795696,23166809 Q39090 O49484 UFO ASK11 0.832 12795696,12169662,12711337,23166809 Q39090 Q00958 UFO LFY 0.939 18287201 Q9FHW7 Q39090 SKP1B UFO 0.932 12795696,12169662,10607296,20458496,23166809 Q39255 Q39090 SKP1A UFO 0.993 12169662,20458496,23166809,15749712,12724534,12826617,23226441,12795696,10607296,12711337 Q9SL93 Q39090 ASK3 UFO 0.309 23226441 Q39090 O81058 UFO ASK19 0.332 12795696 Q39090 P43291 UFO SRK2A 0.671 10607296 Q8LAZ7 Q39090 CSN5B UFO 0.21 12724534 Q8W206 Q39090 CSN6A UFO 0.21 12724534 Q9FVU9 Q39090 CSN5A UFO 0.21 12724534