PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q949Y0 Q9FYE1 enzymatic study 23964026 direct interaction X 2 Q949Y0 two hybrid 21952135 direct interaction X 2 Q949Y0 P0DH97 pull down 15987637 direct interaction X 2 Q949Y0 P0DH97 unspecified method 15987637 direct interaction X 2 Q1EC66 Q949Y0 affinity chromatography technology 23667124 physical association X 2 Q949Y0 P0DH97 filter binding 15987637 direct interaction X 2 Q949Y0 P0DH97 phage display 15987637 physical association X 2 Q949Y0 P0DH97 electrophoretic mobility shift assay 15987637 direct interaction X 2 Q949Y0 P0DH97 competition binding 15987637 direct interaction X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B UBP6 AMC9 MI:0415(enzymatic study) 23964026 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_17802 prey bait UBP6 NDL1 MI:0018(two hybrid) 21952135 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_14241 prey bait CAM3 UBP6 MI:0096(pull down)|MI:0096(pull down) 15987637 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction) (biogrid)|(biogrid) BIOGRID_5818|BIOGRID_5817 bait|prey prey|bait UBQ3 UBP6 MI:0004(affinity chromatography technology) 23667124 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_18155 bait prey CAM3 UBP6 MI:0049(filter binding)|MI:0049(filter binding)|MI:0049(filter binding)|MI:0049(filter binding) 15987637 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction) (intact)|(intact)|(intact)|(intact) UniProt_13747|UniProt_13745|UniProt_13746|UniProt_13744 neutral component|bait|neutral component|prey neutral component|prey|neutral component|bait

PPI - HINT Gene A Gene B PMID Method Quality CAM2 UBP6 15987637,15987637,15987637,15987637 0096,0405,0084,0049 LC CAM5 UBP6 15987637,15987637,15987637,15987637 0096,0405,0084,0049 LC UBP6 NDL1 21952135 0018 HT UBP6 AMC9 23964026 0415 LC CAM2 UBP6 15987637,15987637,15987637,15987637 0096,0405,0084,0049 LC CAM5 UBP6 15987637,15987637,15987637,15987637 0096,0405,0084,0049 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q949Y0 Q1EC66 UBP6 UBQ3 0.126 23667124 Q9FYE1 Q949Y0 AMC9 UBP6 0.183 23964026 Q949Y0 P25069 UBP6 CAM2 0.74 15987637 Q949Y0 P0DH97 UBP6 CAM2 0.523 15987637 Q949Y0 P0DH98 UBP6 CAM3 0.523 15987637 Q949Y0 Q682T9 UBP6 CAM5 0.523 15987637