PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q9SJ60 Q9SL04 two hybrid 21798944 direct interaction X 2 Q9SB64 Q9SL04 pull down 21606687 direct interaction X 2 Q8W5R5 Q9SL04 two hybrid 21798944 direct interaction X 2 Q93YP9 Q9SL04 protein complementation assay 22737156 direct interaction X 2 Q9SL04 Q84WW7 two hybrid 21798944 direct interaction X 2 Q94CD5 Q9SL04 two hybrid 21798944 direct interaction X 2 Q9SL04 protein complementation assay 22737156 direct interaction X 2 Q9SL04 two hybrid 21798944 direct interaction X 2 F4IJ67 Q9SL04 two hybrid 21798944 direct interaction X 2 Q9SL04 Q56ZZ7 protein complementation assay 22737156 direct interaction X 2 Q9SL04 O80605 protein complementation assay 22737156 direct interaction X 2 Q9SL04 Q9LNJ0-2 protein complementation assay 22737156 direct interaction X 2 Q9SL04 Q9FG29 two hybrid 21798944 direct interaction X 2 Q9LSM6 Q9SL04 two hybrid 21798944 direct interaction X 2 Q9SJ60 Q9SL04 two hybrid array 21798944 physical association X 2 Q8W5R5 Q9SL04 two hybrid array 21798944 physical association X 2 Q940T9 Q9SL04 two hybrid array 21798944 physical association X 2 Q9SL04 Q84WW7 two hybrid array 21798944 physical association X 2 Q9SL04 Q8L732 two hybrid array 21798944 physical association X 2 Q94CD5 Q9SL04 two hybrid array 21798944 physical association X 2 Q9SL04 Q9FG29 two hybrid array 21798944 physical association X 2 Q9LSM6 Q9SL04 two hybrid array 21798944 physical association X 2 Q9LSM6 Q9SL04 two hybrid array 21798944 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B At5g06780 ATG8D MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_5480 prey bait SUC3 ATG8D MI:0090(protein complementation assay) 22737156 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16158 prey bait CNGC10 ATG8D MI:0090(protein complementation assay) 22737156 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16194 prey bait At2g35900 ATG8D MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact) BIOGRID_10651|UniProt_5482 prey|prey bait|bait F22K18.110 ATG8D MI:0096(pull down) 21606687 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_15909 prey bait At5g16150 ATG8D MI:0090(protein complementation assay) 22737156 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_15965 prey bait COL4 ATG8D MI:0397(two hybrid array)|MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction) (intact)|(biogrid) UniProt_5478|BIOGRID_9089 prey|prey bait|bait At1g19450 ATG8D MI:0090(protein complementation assay) 22737156 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16258 prey bait At1g29800 ATG8D MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact) BIOGRID_10309|UniProt_5475 bait|prey prey|bait ATG7 ATG8D MI:0397(two hybrid array)|MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction) (intact)|(biogrid) UniProt_5479|BIOGRID_9149 prey|prey bait|bait At5g65480 ATG8D MI:0397(two hybrid array)|MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (intact)|(biogrid)|(intact) UniProt_4527|BIOGRID_9646|UniProt_5481 bait|prey|prey prey|bait|bait At2g46550 ATG8D MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_5476 prey bait MKRP2 ATG8D MI:0397(two hybrid array)|MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction) (intact)|(biogrid) UniProt_5477|BIOGRID_10252 prey|prey bait|bait F7H19.220 ATG8D MI:0090(protein complementation assay) 22737156 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_16416 prey bait ATG8D At2g46550 MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_13162 bait prey

PPI - HINT Gene A Gene B PMID Method Quality B9DHY8 ATG8D 21798944 0018 HT SUC3 ATG8D 22737156 0090 LC DTX49 ATG8D 22737156 0090 LC Q56ZZ7 ATG8D 22737156 0090 LC Q84WW7 ATG8D 21798944,21798944 0018,0397 HT Q8L732 ATG8D 21798944 0397 HT MKRP2 ATG8D 21798944,21798944 0018,0397 HT Q93YP9 ATG8D 22737156 0090 LC COL4 ATG8D 21798944,21798944 0018,0397 HT ATG7 ATG8D 21798944,21798944 0018,0397 HT EML2 ATG8D 21798944,21798944 0018,0397 HT CNGC10 ATG8D 22737156 0090 LC Q9LSM6 ATG8D 21798944,21798944 0018,0397 HT Q9SJ60 ATG8D 21798944,21798944 0018,0397 HT ATG8D Q9ZPY4 21798944 0018 HT NBR1 ATG8D 21606687 0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q9SL04 Q9FG29 ATG8D Q9FG29 0.286 21798944 Q9SL04 Q8W5R5 ATG8D MKRP2 0.286 21798944 Q9SL04 Q940T9 ATG8D COL4 0.286 21798944 Q9SL04 Q94CD5 ATG8D ATG7 0.286 21798944 Q9SL04 Q9SJ60 ATG8D Q9SJ60 0.126 21798944 Q9SL04 Q84WW7 ATG8D Q84WW7 0.126 21798944 Q9SL04 Q56ZZ7 ATG8D Q56ZZ7 0.183 22737156 Q9SL04 O82752 ATG8D DTX49 {ECO:0000303|PUBMED:11739388} 0.183 22737156 Q9SL04 O80605 ATG8D SUC3 0.183 22737156 Q9SL04 Q8L732 ATG8D Q8L732 0.126 21798944 Q9SL04 Q93YP9 ATG8D Q93YP9 0.183 22737156 Q9SL04 Q9LSM6 ATG8D Q9LSM6 0.236 21798944 Q9SL04 Q9LNJ0 ATG8D CNGC10 0.183 22737156 Q9SL04 Q9SB64 ATG8D F22K18.110 0.309 21606687