PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q8VYK7 Q0WWQ1 pull down 23142983 direct interaction X 2 Q8VYK7 Q1EC66 affinity chromatography technology 23667124 physical association X 2 Q8VYK7 F4JLF5 two hybrid 24249832 direct interaction X 2 Q8VYK7 F4JLF5 affinity chromatography technology 24249832 physical association X 2 Q8VYK7 Q93XY2 two hybrid 21798944 direct interaction X 2 Q8VYK7 Q9FM29 two hybrid 21798944 direct interaction X 2 Q8VYK7 F4IJ67 two hybrid 21798944 direct interaction X 2 Q8VYK7 Q9ZPR1 two hybrid 21952135 direct interaction X 2 Q8VYK7 Q9SB64 pull down 21606687 direct interaction X 2 Q8VYK7 Q94CD5 pull down 23142983 direct interaction X 2 Q8VYK7 Q84VW0 two hybrid 21798944 direct interaction X 2 Q8VYK7 Q9SJ60 two hybrid 21798944 direct interaction X 2 Q8VYK7 Q9SB64 two hybrid 21798944 direct interaction X 2 Q8VYK7 Q8L732 two hybrid array 21798944 physical association X 2 Q8VYK7 Q8VWF1 two hybrid array 21798944 physical association X 2 Q8VYK7 Q93XY2 two hybrid array 21798944 physical association X 2 Q8VYK7 Q940T9 two hybrid array 21798944 physical association X 2 Q8VYK7 Q9FM29 two hybrid array 21798944 physical association X 2 Q8VYK7 Q84VW0 two hybrid array 21798944 physical association X 2 Q8VYK7 Q9FG29 two hybrid array 21798944 physical association X 2 Q8VYK7 Q9SB64 two hybrid array 21798944 physical association X 2 Q8VYK7 Q9SJ60 two hybrid array 21798944 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B ATG8F F22K18.110 MI:0397(two hybrid array)|MI:0096(pull down)|MI:0018(two hybrid) 21606687,21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction) (intact)|(biogrid)|(biogrid) UniProt_6423|BIOGRID_15910|BIOGRID_12267 bait|bait|bait prey|prey|prey ATG8F At5g06780 MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_6421 bait prey ATG3 ATG8F MI:0114(x-ray crystallography) 23142983 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_17075 bait prey At4g15930 ATG8F MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact) BIOGRID_10323|UniProt_6416 bait|prey prey|bait ATG8F At5g40690 MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact) BIOGRID_10831|UniProt_6422 bait|bait prey|prey COL4 ATG8F MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_6420 prey bait UBQ3 ATG8F MI:0004(affinity chromatography technology) 23667124 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_18622 bait prey At4g34660 ATG8F MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944,24249832 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(biogrid)|(intact) BIOGRID_20548|BIOGRID_20545|UniProt_6418 prey|prey|prey bait|bait|bait At2g46550 ATG8F MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_6417 prey bait ATG7 ATG8F MI:0114(x-ray crystallography) 23142983 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_17076 bait prey ATG8F At2g46550 MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_11551 prey bait ATG8F CDC48B MI:0018(two hybrid) 21952135 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_14680 prey bait MBK20.19 ATG8F MI:0397(two hybrid array)|MI:0018(two hybrid) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction) (intact)|(biogrid) UniProt_6419|BIOGRID_10829 prey|prey bait|bait ATG8F At2g35900 MI:0018(two hybrid)|MI:0397(two hybrid array) 21798944 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(intact) BIOGRID_12266|UniProt_6424 prey|bait bait|prey

PPI - HINT Gene A Gene B PMID Method Quality B9DHY8 ATG8F 21798944 0018 HT DTX34 ATG8F 25281689 0055 LC Q84VW0 ATG8F 21798944,21798944 0018,0397 HT Q8L732 ATG8F 21798944 0397 HT SH3P2 ATG8F 24249832,24249832,21798944 0018,0004,0397 LC,HT ATG8F MBK20.19 21798944,21798944 0018,0397 HT ATG8F COL4 21798944 0397 HT ATG8F EML2 21798944 0397 HT ATG8F Q9FM29 21798944,21798944 0018,0397 HT ATG8F NBR1 21798944,21798944 0018,0397 HT ATG8F Q9SJ60 21798944,21798944 0018,0397 HT ATG8F CDC48B 21952135 0018 HT ATG8F Q9ZPY4 21798944 0018 HT SH3P2 ATG8F 24249832,24249832 0018,0004 LC ATG8F ATG7 23142983 0096 LC ATG8F PFK4 23142983 0096 LC ATG8F NBR1 21606687 0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q8VYK7 Q1EC66 ATG8F UBQ3 0.126 23667124 Q8VYK7 Q0WWQ1 ATG8F ATG3 0.309 23142983 Q9FM29 Q8VYK7 Q9FM29 ATG8F 0.126 21798944 Q9ZPR1 Q8VYK7 CDC48B ATG8F 0.183 21952135 Q8VYK7 Q8VWF1 ATG8F Q8VWF1 0.523 24249832,21798944 Q8VYK7 Q8VY98 ATG8F ATI2 {ECO:0000303|PUBMED:22253227} 0.309 25281689 Q8VYK7 Q8L732 ATG8F Q8L732 0.126 21798944 Q8VYK7 Q84VW0 ATG8F Q84VW0 0.126 21798944 Q9FG29 Q8VYK7 Q9FG29 ATG8F 0.126 21798944 Q93XY2 Q8VYK7 MBK20.19 ATG8F 0.126 21798944 Q9SJ60 Q8VYK7 Q9SJ60 ATG8F 0.126 21798944 Q940T9 Q8VYK7 COL4 ATG8F 0.126 21798944 Q94CD5 Q8VYK7 ATG7 ATG8F 0.309 23142983 Q9SB64 Q8VYK7 F22K18.110 ATG8F 0.507 21798944,21606687