PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants O49552 affinity chromatography technology 18223036 physical association X 2 P43254 O49552 affinity chromatography technology 24067658 physical association X 2 P43254 O49552 pull down 20061554 direct interaction X 2 P43254 O49552 affinity chromatography technology 20061554 physical association X 2 O49552 F4K3Y7 affinity chromatography technology 18223036 physical association X 2 O49552 F4J6P6 affinity chromatography technology 18223036 physical association X 2 O49552 Q9T014 pull down 20061554 direct interaction X 2 Q9SZQ5 O49552 affinity chromatography technology 18223036 physical association X 2 Q42384 O49552 affinity chromatography technology 18223036 physical association X 2 O22469 O49552 affinity chromatography technology 18223036 physical association X 2 F4HTH9 O49552 affinity chromatography technology 21421380 physical association X 2 Q8LGH4 O49552 affinity chromatography technology 24067658 physical association X 2 Q8LGH4 O49552 pull down 16792691 direct interaction X 2 Q8LGH4 O49552 affinity chromatography technology 18223036 physical association X 2 Q8LGH4 O49552 affinity chromatography technology 20061554 physical association X 2 P48732 O49552 affinity chromatography technology 20061554 physical association X 2 Q9FFS4 O49552 affinity chromatography technology 24563205 physical association X 2 Q9FFS4 O49552 two hybrid 24563205 direct interaction X 2 Q9FFS4 O49552 two hybrid 24563205 direct interaction X 2 Q94BM7 O49552 pull down 20061554 direct interaction X 2 Q0WVZ3 O49552 affinity chromatography technology 18223036 physical association X 2 O49552 Q8L4M1 affinity chromatography technology 18223036 physical association X 2 O49552 Q8L4M1 affinity chromatography technology 20525848 physical association X 2 O49552 O22607 two hybrid 21282611 direct interaction X 2 O49552 O22607 affinity chromatography technology 21282611 physical association X 2 O49552 pull down 20061554 direct interaction X 2 P93831 O49552 affinity chromatography technology 21282611 physical association X 2 Q9SYX2 O49552 affinity chromatography technology 24067658 physical association X 2 Q9SYX2 O49552 pull down 20061554 direct interaction X 2 Q9SYX2 O49552 affinity chromatography technology 20061554 physical association X 2 Q6NPN9 O49552 affinity chromatography technology 20525848 physical association X 2 O49552 O22607 two hybrid 21282611 direct interaction X 2 Q8LGH4 O49552 pull down 16792691 direct interaction X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B DDB1B At5g41560 MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology) 24563205 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction) (biogrid)|(biogrid)|(biogrid) BIOGRID_21148|BIOGRID_21154|BIOGRID_21153 prey|bait|prey bait|prey|bait DDB1B SPA1 MI:0401(biochemical)|MI:0401(biochemical)|MI:0004(affinity chromatography technology) 20061554,24067658 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0915(physical association)|MI:0915(physical association) (biogrid)|(biogrid)|(biogrid) BIOGRID_4067|BIOGRID_4072|BIOGRID_20240 bait|bait|bait prey|prey|prey DDB1B CUL4 MI:0401(biochemical)|MI:0018(two hybrid)|MI:0004(affinity chromatography technology)|MI:0018(two hybrid)|MI:0018(two hybrid) 16792691,18223036,20061554,24067658 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction) (biogrid)|(biogrid)|(biogrid)|(biogrid)|(intact) BIOGRID_4073|BIOGRID_2862|BIOGRID_20242|BIOGRID_883|UniProt_12490 bait|bait|prey|bait|bait prey|prey|bait|prey|prey DDB1B F9K21.200 MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2867 bait prey DDB1B F27B13.70 MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2870 bait prey DDB1B TIF3I1 MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2865 bait prey DDB1B At1g65030 MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2869 bait prey DDB1B PRL1 MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2863 bait prey DDB1B At1g61210 MI:0018(two hybrid) 21421380 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_6680 prey bait DDB1B CLF MI:0018(two hybrid) 21282611 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_6715 bait prey DDB1B DWA2 MI:0018(two hybrid) 20525848 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_4825 prey bait MSI3 DDB1B MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2868 prey bait DDB1B DWA1 MI:0018(two hybrid)|MI:0018(two hybrid) 18223036,20525848 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (biogrid)|(biogrid) BIOGRID_4824|BIOGRID_2871 prey|bait bait|prey DDB1B FY MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2864 bait prey DDB1B SPA2 MI:0401(biochemical) 20061554 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_4069 bait prey DDB1B SPA4 MI:0401(biochemical) 20061554 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_4071 bait prey DDB1B SPA3 MI:0401(biochemical) 20061554 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_4070 bait prey

PPI - HINT Gene A Gene B PMID Method Quality MSI4 DDB1B 21282611,21282611 0004,0018 LC DDB1B Q9FFS4 24563205,24563205 0004,0018 LC F4HTH9 DDB1B 21421380 0004 LC F4J6P6 DDB1B 18223036 0004 LC MSI3 DDB1B 18223036 0004 LC MSI4 DDB1B 21282611,21282611 0004,0018 LC DDB1B COP1 20061554,20061554,24067658 0096,0004,0004 LC DDB1B DET1 20061554 0004 LC DDB1B CLF 21282611 0004 LC DDB1B TIF3I1 18223036 0004 LC DDB1B PRL1 18223036 0004 LC DDB1B Q5XEV4 18223036 0004 LC DDB1B FY 18223036 0004 LC DDB1B DWA2 20525848 0004 LC DDB1B THO6 18223036,20525848 0004,0004 LC DDB1B CUL4 16792691,18223036,20061554,24067658 0096,0004,0004,0004 LC DDB1B SPA4 20061554 0096 LC DDB1B Q9FFS4 24563205,24563205 0004,0018 LC DDB1B SPA3 20061554 0096 LC DDB1B SPA1 20061554,20061554,24067658 0096,0004,0004 LC DDB1B VIP3 18223036 0004 LC DDB1B SPA2 20061554 0096 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q8L4M1 O49552 THO6 DDB1B 0.376 18223036,20525848 Q8LGH4 O49552 CUL4 DDB1B 0.659 18223036,24067658,16792691,20061554 O49552 O22469 DDB1B MSI3 0.21 18223036 P48732 O49552 DET1 DDB1B 0.21 20061554 P93831 O49552 CLF DDB1B 0.21 21282611 Q38884 O49552 TIF3I1 DDB1B 0.21 18223036 Q42384 O49552 PRL1 DDB1B 0.21 18223036 Q6NLV4 O49552 FY DDB1B 0.21 18223036 Q94BM7 O49552 SPA4 DDB1B 0.309 20061554 Q9LJR3 O49552 SPA3 DDB1B 0.309 20061554 Q9SZQ5 O49552 F27B13.70 DDB1B 0.21 18223036 Q9T014 O49552 SPA2 DDB1B 0.309 20061554 Q6NPN9 O49552 DWA2 DDB1B 0.21 20525848 O49552 O22607 DDB1B MSI4 0.454 21282611 P43254 O49552 COP1 DDB1B 0.569 20061554,24067658 Q9SYX2 O49552 SPA1 DDB1B 0.569 20061554,24067658