PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants P55034 Q9ZPY9 affinity chromatography technology 17880284 physical association X 2 P55034 Q9ZPY9 affinity chromatography technology 17880284 physical association X 2 P55034 Q9ZPY9 enzymatic study 17880284 direct interaction X 2 P55034 Q84L33-2 affinity chromatography technology 20059542 physical association X 2 P55034 A0A024R284 affinity chromatography technology 20059542 physical association X 2 P55034 Q9SII8 affinity chromatography technology 20059542 physical association X 2 P55034 Q9SII8 pull down 20059542 direct interaction X 2 P55034 Q84L33-2 pull down 20059542 direct interaction X 2 P55034 Q1EC66 affinity chromatography technology 19429840 physical association X 2 P48510 P55034 affinity chromatography technology 20059542 physical association X 2 P55034 P54727 affinity chromatography technology 20059542 physical association X 2 P55034 Q9FYE1 enzymatic study 23964026 direct interaction X 2 P55034 affinity chromatography technology 19874541 association C 15 P55034 affinity chromatography technology 19874541 association C 16 P55034 Q9SII8 pull down 20059542 direct interaction X 2 P55034 Q9UHD9 pull down 20059542 direct interaction X 2 P55034 Q84L32 pull down 20059542 direct interaction X 2 P55034 Q84L32 pull down 20059542 direct interaction X 2 P55034 Q84L31 pull down 20059542 direct interaction X 2 P55034 Q84L32 pull down 20059542 direct interaction X 2 P55034 Q9SII8 pull down 20059542 direct interaction X 2 Q84L30 P55034 pull down 20059542 direct interaction X 2 P48510 P55034 pull down 20059542 direct interaction X 2 P0CG48 P55034 pull down 20059542 direct interaction X 2 P0CG48 P55034 pull down 20059542 direct interaction X 2 P55034 P54727 pull down 20059542 direct interaction X 2 P55034 P54727 pull down 20059542 direct interaction X 2 P55034 P54727 pull down 20059542 direct interaction X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B MBP1 PI4K MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology) 17880284 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association)|MI:0407(direct interaction) (biogrid)|(biogrid)|(biogrid) BIOGRID_15793|BIOGRID_15796|BIOGRID_15798 prey|prey|prey bait|bait|bait MBP1 UBQ3 MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association) (intact)|(intact)|(intact) UniProt_206793|UniProt_104103|UniProt_11821 bait|bait|bait null|null|null MBP1 DSK2 MI:0004(affinity chromatography technology)|MI:0096(pull down)|MI:0004(affinity chromatography technology)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction) (biogrid)|(intact)|(biogrid)|(intact)|(intact)|(intact)|(intact)|(intact) BIOGRID_16730|UniProt_104136|BIOGRID_16725|UniProt_206826|UniProt_11771|UniProt_11854|UniProt_104053|UniProt_206743 prey|prey|prey|prey|prey|prey|prey|prey bait|bait|bait|bait|bait|bait|bait|bait MBP1 AMC9 MI:0415(enzymatic study) 23964026 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_17843 prey bait MBP1 RAD23B MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction) (biogrid)|(biogrid) BIOGRID_16721|BIOGRID_16731 prey|prey bait|bait MBP1 RAD23-4 MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction) (intact)|(intact)|(intact) UniProt_104051|UniProt_206741|UniProt_11769 prey|prey|prey bait|bait|bait MBP1 RAD23A MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction) (intact)|(intact)|(intact)|(intact)|(intact)|(intact)|(intact)|(intact)|(intact) UniProt_206833|UniProt_104141|UniProt_11861|UniProt_104143|UniProt_104050|UniProt_11768|UniProt_11859|UniProt_206831|UniProt_206740 prey|prey|prey|prey|prey|prey|prey|prey|prey bait|bait|bait|bait|bait|bait|bait|bait|bait MBP1 RAD23-3 MI:0096(pull down)|MI:0096(pull down)|MI:0096(pull down) 20059542 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction)|MI:0407(direct interaction)|MI:0407(direct interaction) (intact)|(intact)|(intact) UniProt_206739|UniProt_104049|UniProt_11767 prey|prey|prey bait|bait|bait MBP1 UBQ3 MI:0004(affinity chromatography technology) 19429840 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_7688 prey bait

PPI - HINT Gene A Gene B PMID Method Quality RPN10 ATG8A 26004230,26004230,26004230 0096,0018,0090 LC RPN10 RPN9A 26004230 0018 LC RPN10 AMC9 23964026 0415 LC RPN10 DSK2B 26004230 0018 LC RPN10 PI4KG4 17880284,17880284 0415,0004 LC RPL40A RPN10 20059542 0096 LC ABI1 RPN10 19874541 0004 LC RPN10 UBQ3 19429840 0004 LC RPN10 RAD23D 20059542 0096 LC RPN10 RAD23C 20059542 0096 LC RPN10 RAD23A 20059542 0096 LC RPN10 RAD23B 20059542,20059542 0096,0004 LC RPN10 ATG8A 26004230,26004230,26004230 0096,0018,0090 LC RPN10 DSK2B 20059542,20059542 0096,0004 LC RPN10 RPT2A 24846764 0004 LC RPN10 PI4KG4 17880284,17880284 0415,0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q1EC66 P55034 UBQ3 RPN10 0.126 19429840 Q9FYE1 P55034 AMC9 RPN10 0.183 23964026 P55034 P0CG48 RPN10 UBC 0.183 20059542 Q84L30 P55034 RAD23D RPN10 0.183 20059542 Q84L31 P55034 RAD23C RPN10 0.183 20059542 Q9ZPY9 P55034 PI4KG4 RPN10 0.454 17880284 Q9SII8 P55034 DSK2B RPN10 0.597 20059542,26004230 Q84L33 P55034 RAD23B RPN10 0.286 20059542 Q8LEM4 P55034 ATG8A RPN10 0.671 26004230 Q9SZD4 P55034 RPT2A RPN10 0.126 24846764 Q9UMX0 P55034 UBQLN1 RPN10 0.126 20059542 P55034 P48510 RPN10 DSK2 0.286 20059542 P55034 P49597 RPN10 ABI1 0.21 19874541 P55034 P54727 RPN10 RAD23B 0.286 20059542 Q84L32 P55034 RAD23A RPN10 0.332 20059542 Q8RWF0 P55034 RPN9A RPN10 0.309 26004230 Q9UHD9 P55034 UBQLN2 RPN10 0.183 20059542