PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q6NLV4 tandem affinity purification 19439664 physical association C 3 Q6NLV4 anti tag coimmunoprecipitation 17008405 association C 5 Q6NLV4 tandem affinity purification 18298670 association C 3 Q6NLV4 Q9LKF9 two hybrid 18479511 physical association X 2 Q6NLV4 anti tag coimmunoprecipitation 18223036 association C 5 Q6NLV4 Q9M0V3 two hybrid 18223036 physical association X 2 Q6NLV4 Q9FGR0 molecular sieving 19439664 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B FY F7O18.15 MI:0004(affinity chromatography technology) 18971429 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_1347 prey bait FY CPSF73-II MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology) 19748916 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (biogrid)|(biogrid) BIOGRID_3968|BIOGRID_3993 prey|bait bait|prey FY CPSF100 MI:0676(tandem affinity purification)|MI:0007(anti tag coimmunoprecipitation)|MI:0018(two hybrid)|MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology)|MI:0004(affinity chromatography technology) 17008405,18479511,19439664,19748916 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0914(association)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (intact)|(intact)|(intact)|(biogrid)|(biogrid)|(biogrid)|(biogrid) UniProt_10654|UniProt_14975|UniProt_11491|BIOGRID_3994|BIOGRID_875|BIOGRID_3987|BIOGRID_3970 bait|prey|prey|bait|prey|prey|bait prey|bait|bait|prey|bait|bait|prey FY DDB1A MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0914(association)|MI:0407(direct interaction)|MI:0915(physical association) (intact)|(biogrid)|(intact) UniProt_15340|BIOGRID_2859|UniProt_15337 prey|prey|prey bait|bait|bait PCFS4 FY MI:0018(two hybrid)|MI:0018(two hybrid) 18298670 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0914(association)|MI:0915(physical association) (intact)|(biogrid) UniProt_15559|BIOGRID_685 bait|bait prey|prey FY CPSF73-I MI:0004(affinity chromatography technology) 19748916 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_3965 prey bait FY CPSF160 MI:0676(tandem affinity purification)|MI:0676(tandem affinity purification)|MI:0004(affinity chromatography technology) 19439664,19748916 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association)|MI:0915(physical association) (intact)|(intact)|(biogrid) UniProt_10654|UniProt_10655|BIOGRID_3971 bait|neutral component|bait prey|neutral component|prey DDB1B FY MI:0018(two hybrid) 18223036 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_2864 bait prey

PPI - HINT Gene A Gene B PMID Method Quality FY CPSF160 19439664,19439664,19439664,19439664 0071,0676,0401,0004 LC FY CPSF100 19748916,18479511,19748916 0004,0018,0018 LC FY DDB1A 18223036,18223036 0007,0018 LC FCA FY 18854333,16033802,12809608 0096,0096,0096 LC DDB1B FY 18223036 0004 LC SUMO1 FY 19151129 0004 LC PCFS4 FY 18298670,18298670 0004,0676 LC FY FY 19748916 0004 LC FY CPSF73-II 19748916 0004 LC FY CPSF73-I 19748916 0004 LC FY CPSF160 19439664,19748916,19439664,19439664,19439664 0071,0004,0676,0401,0004 LC FY CPSF100 19748916,17008405,19439664,17008405,19748916,19439664 0004,0004,0004,0007,0018,0676 LC FY DDB1A 18223036,18223036 0007,0018 LC FY CLPS3 18971429 0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q8GUU3 Q6NLV4 CPSF73-II FY 0.376 19748916 Q6NLV4 O49552 FY DDB1B 0.21 18223036 Q9M0V3 Q6NLV4 DDB1A FY 0.623 18223036 Q6NLV4 Q6NLV4 FY FY 0.236 19748916 Q6NLV4 Q0WPF2 FY PCFS4 0.376 18298670 Q6NLV4 O04425 FY FCA 0.671 16033802,12809608,18854333 Q9LKF9 Q6NLV4 CPSF100 FY 0.902 19439664,18479511,17008405,19748916 Q9FGR0 Q6NLV4 CPSF160 FY 0.659 19439664,19748916 Q9C952 Q6NLV4 CPSF73-I FY 0.21 19748916 Q9SR06 Q6NLV4 CLPS3 FY 0.21 18971429 Q6NLV4 P55852 FY SUMO1 0.21 19151129