PPI - iRefIndex UniProt A UniProt B Method PMID Interaction Type Edge type Num Participants Q9SWI1 Q9FMF5 pull down 16777956 direct interaction X 2 O48963 Q9FMF5 two hybrid 10542152 direct interaction X 2 O48963 Q9FMF5 pull down 10542152 direct interaction X 2 O48963 Q9FMF5 affinity chromatography technology 20071603 physical association X 2 Q9ZVH4 Q9FMF5 affinity chromatography technology 21990941 physical association X 2 Q9FMF5 P93025-2 affinity chromatography technology 20071603 physical association X 2 F4JLD1 Q9FMF5 two hybrid 21952135 direct interaction X 2 Q9FMF5 anti tag coimmunoprecipitation 16777956 - C 3 Q9FMF5 anti tag coimmunoprecipitation 16777956 - C 3 Q9SWI1 Q9FMF5 anti tag coimmunoprecipitation 16777956 direct interaction X 2 Q9SWI1 Q9FMF5 pull down 16777956 direct interaction X 2 O48963 Q9FMF5 anti tag coimmunoprecipitation 16777956 physical association X 2 Q9SWI1 Q9FMF5 pull down 16777956 physical association X 2 O48963 Q9FMF5 two hybrid 10542152 physical association X 2 O48963 Q9FMF5 anti tag coimmunoprecipitation 10542152 physical association X 2 Q9FMF5 Q9SW11 anti tag coimmunoprecipitation 16777956 physical association X 2 Q9FMF5 Q9SW11 anti tag coimmunoprecipitation 16777956 physical association X 2

PPI - PINA Gene A Gene B Method Publications Species A Species B Interaction Type Source Database Interaction Identidiers Experimental Role(s) Interactor A Experimental Role(s) Interactor B PHOT2 RPT3 MI:0004(affinity chromatography technology) 20071603 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_4057 bait prey PHOT1 RPT3 MI:0004(affinity chromatography technology)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid)|MI:0018(two hybrid) 10542152,20071603 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association)|MI:0407(direct interaction)|MI:0915(physical association) (biogrid)|(biogrid)|(intact)|(biogrid)|(intact) BIOGRID_4054|BIOGRID_1896|UniProt_16228|BIOGRID_1897|UniProt_16227 bait|bait|prey|prey|bait prey|prey|bait|bait|prey RPT3 CUL3A MI:0004(affinity chromatography technology) 21990941 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (biogrid) BIOGRID_8049 prey bait GB1 RPT3 MI:0018(two hybrid) 21952135 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0407(direct interaction) (biogrid) BIOGRID_14273 bait prey RPT3 PUB35 MI:0096(pull down)|MI:0096(pull down) 16777956 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association)|MI:0915(physical association) (intact)|(intact) UniProt_11931|UniProt_11932 prey|bait bait|prey RPT3 PKS1 MI:0096(pull down) 16777956 taxid:3702(Arabidopsis thaliana) taxid:3702(Arabidopsis thaliana) MI:0915(physical association) (intact) UniProt_11930 prey bait

PPI - HINT Gene A Gene B PMID Method Quality PHOT1 RPT3 10542152,10542152,10542152 0007,0096,0018 LC GB1 RPT3 24486545,24486545,24486545,21952135 0096,0018,0055,0018 LC,HT Q8GZ22 RPT3 21798944,21798944 0018,0397 HT RPT3 RPT2A 14623884 0401 LC BUB3.3 RPT3 20706207,20706207 0004,0676 HT PHOT1 RPT3 10542152,10542152,20071603,16777956,10542152 0007,0096,0004,0007,0018 LC CDKA-1 RPT3 20706207,20706207 0004,0676 HT GB1 RPT3 24486545,24486545,24486545 0096,0018,0055 LC PHOT2 RPT3 20071603 0004 LC UBQ3 RPT3 19429840 0004 LC KRP4 RPT3 20706207,20706207 0004,0676 HT RPT3 RPN1A 20706207,20706207 0004,0676 HT RPT3 PUB35 16777956 0007 LC RPT3 PKS1 16777956,16777956 0007,0096 LC RPT3 RPT2A 14623884,24846764 0401,0004 LC RPT3 F9L1.32 24529374 0676 LC RPT3 CUL3A 21990941 0004 LC

PPI - Mentha Protein A Protein B Gene A Gene B Score PMID Q9FMF5 P49177 RPT3 GB1 0.731 24486545,21952135 Q9ZVH4 Q9FMF5 CUL3A RPT3 0.21 21990941 Q9SWI1 Q9FMF5 PKS1 RPT3 0.454 16777956 Q9FMF5 O48963 RPT3 PHOT1 0.794 10542152,20071603 Q9SW11 Q9FMF5 PUB35 RPT3 0.21 16777956 Q9FMF5 P93025 RPT3 PHOT2 0.21 20071603