DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome RHBDD3 3'UTR 7a27956712 BA090762 NM_012265 chr22:27985844-27991614:- RHBDD3 3'UTR 641166f7ad BA090763 NM_012265 chr22:27985841-27991614:- RHBDD3 3'UTR 841596e868 BA090764 NM_012265 chr22:27985841-27991614:- RHBDD3 3'UTR 498f8a1747 NM_012265 chr22:27986315-27991330:- RHBDD3 3'UTR 009b89050f NM_012265 chr22:27985841-27990389:- RHBDD3 3'UTR 0a1752754e NM_012265 chr22:27985841-27990341:- RHBDD3 5'UTR 7a27956712 CA142454 NM_012265 chr22:27986050-27993914:- RHBDD3 5'UTR 641166f7ad CA142455 NM_012265 chr22:27986050-27994152:- RHBDD3 5'UTR 841596e868 CA142456 NM_012265 chr22:27986050-27993717:-

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-RHBDD3-antisense.1 NM_012265Tchr22:29627008-29657285 expressed RHBDD3 25807 protein-coding + not_available

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004514 hsa-miR-29b-1* 25807 RHBDD3 agauuuGGUGGUAUACUUUGGUCg ::| ||| ||||||| acguguUUAGAAUA-AAAACCAGu 2 19 155 177 [hg19:22:29655872-29655894:-] 0.5728 144 7 -11.32 -1.2068 MIMAT0004515 hsa-miR-29b-2* 25807 RHBDD3 gauucggugguacacUUUGGUc |||||| acguguuuagaauaaAAACCAg 2 8 155 176 [hg19:22:29655873-29655894:-] 0.5728 120 6 -12.77 -0.1186 MIMAT0004797 hsa-miR-582-3p 25807 RHBDD3 ccAAGUCAACAAGUUGGUCAAu ||:|| |||||||| ugUUUAGAAUAAAAACCAGUUu 2 21 158 179 [hg19:22:29655870-29655891:-] 0.5728 148 7 -17.18 -1.2000 MIMAT0003324 hsa-miR-661 25807 RHBDD3 ugcgcguccggucucuGGGUCCGu ||||||| ----------------CCCAGGCa 2 9 1 8 [hg19:22:29656041-29656048:-] 0.4377 140 7 -15.68 -0.1009 MIMAT0005867 hsa-miR-663b 25807 RHBDD3 ggaguccgugccggCCCGGUGg ||||||| acucugucuaaagaGGGCCACa 2 9 76 97 [hg19:22:29655952-29655973:-] 0.4377 140 7 -20.60 -0.6066 MIMAT0005912 hsa-miR-548g 25807 RHBDD3 cauGUUUUCAUUAAUGUCAAAa :|:|| || |||||| guuUAGAAUAAAAACCAGUUUg 2 20 159 180 [hg19:22:29655869-29655890:-] 0.5728 123 6 -5.91 -0.1837 MIMAT0015036 hsa-miR-3162 25807 RHBDD3 gaggGGUGGGAAG-AUGA-GGGAUu || ||| | |:|| ||||| gaggCCCCCCAGCAUGCUGCCCUAg 2 20 129 153 [hg19:22:29655896-29655920:-] 0.5085 122 0 -27.02 -0.5122 MIMAT0015048 hsa-miR-3173 25807 RHBDD3 accggacGGAUAAAGGAGGAAa |||: ||||||| uuuucaaCCUG-GACCUCCUUg 2 16 182 202 [hg19:22:29655847-29655867:-] 0.5688 141 7 -18.19 -0.3306 MIMAT0016916 hsa-miR-4286 25807 RHBDD3 ccaUGGUCCUCACCCCa :||| ||||||| aggGCCA-CAGUGGGGa 2 15 89 104 [hg19:22:29655945-29655960:-] 0.4377 144 7 -20.34 -0.1155 MIMAT0000752 hsa-miR-328 25807 RHBDD3 ugccuucccGUCUCUCCCGGUc :| ||||||||| uacucugucUAAAGAGGGCCAc 2 14 75 96 [hg19:22:29655953-29655974:-] 0.4377 153 7 -17.41 -0.1364 MIMAT0002817 hsa-miR-495 25807 RHBDD3 uucuucacgUGGUACAAACAAa |||| ||||||| agaauaaaaACCA-GUUUGUUu 2 14 163 183 [hg19:22:29655866-29655886:-] 0.5728 151 7 -15.47 -0.9938

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G018526 RHBDD3 Homo sapiens 25807

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End RHBDD3; C22orf3 1 187 100 236.022 - chr22 29655861 29656048 RHBDD3; C22orf3 188 194 37.998 236.022 - chr22 29655854 29655861 RHBDD3; C22orf3 195 204 23.066 236.022 - chr22 29655844 29655854 RHBDD3; C22orf3 205 208 2.123 236.022 - chr22 29655840 29655844

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile RHBDD3 hsa-miR-129-3p beg:29 end:48 pic:3' TACGAAAAACCC-C-ATTCCCGAA 5'& ||||| | |||||||| &5' -------TTGGGTGCTAAGGGCT- 3' RHBDD3 hsa-miR-129star beg:29 end:48 pic:3' TATGAAAAACCC-C-ATTCCCGAA 5'& ||||| | |||||||| &5' -------TTGGGTGCTAAGGGCT- 3' RHBDD3 hsa-miR-328 beg:84 end:96 pic:3' TGCCTTCCCGTCTCTCCCGGTC 5'& ||||||||| &5' ------------AGAGGGCCA- 3' RHBDD3 hsa-miR-4286 beg:4 end:19 pic:3' CCATGGTC-CTCACCCCA 5'& ||| |||||||| &5' -----CAGAGAGTGGGG- 3' RHBDD3 hsa-miR-4318 beg:88 end:101 pic:3' TCGTACATGGGTGTCAC 5'& . |||||||| &5' -------GGCCACAGTG 3' RHBDD3 ebv-miR-BART16 beg:65 end:87 pic:3' TCTCGTGTGTGGGTGAGATAGATT 5'& |||| ||.|||||.||||| &5' -GAGCT----CCTACTCTGTCTAA 3' RHBDD3 ebv-miR-BART5star beg:97 end:118 pic:3' TCCACTTGTCGCCG-GGTG 5'& .|| ||.||| ||| || | &5' GGG-GAGCAGGGGCACCTC 3' RHBDD3 hsa-miR-103 beg:128 end:149 pic:3' AGTATCGGGACA-TGTTACGACGA 5'& .|||| .| ||||||| &5' ----GGCCCCCCAGC-ATGCTGC- 3' RHBDD3 hsa-miR-103-2star beg:117 end:134 pic:3' GTTCCGTCGTGACATTTCTTCGA 5'& .|||||| .|||.|| &5' -GAGGCAG-------GAGAGGC- 3' RHBDD3 hsa-miR-107 beg:128 end:149 pic:3' ACTATCGGGACA-TGTTACGACGA 5'& || .|||| .| ||||||| &5' -GA-GGCCCCCCAGC-ATGCTGC- 3' RHBDD3 hsa-miR-1231 beg:135 end:157 pic:3' CGTCG-ACAGGCGGG-TCTGTG 5'& |||| || |.|||| || .|| &5' -CAGCATG-CTGCCCTAG-TAC 3' RHBDD3 hsa-miR-1231 beg:9 end:27 pic:3' CGTCGACAGGCGGGTCTGTG 5'& ||. | || |||.|| &5' --AGTGGG--GCACAGGCA- 3' RHBDD3 hsa-miR-1274a beg:95 end:113 pic:3' ACCGCGGACTTGTCCCTG 5'& |.| ||.|||||.| &5' --GTGGG-GAGCAGGGGC 3' RHBDD3 hsa-miR-1274b beg:95 end:111 pic:3' ACCGCGGGCTTGTCCCT 5'& |.| ||.|||||. &5' --GTGGG-GAGCAGGGG 3' RHBDD3 hsa-miR-1275 beg:124 end:140 pic:3' CTGTCGGAGAGGGGGTG 5'& || || | |||||| &5' GAGAGGC---CCCCCA- 3' RHBDD3 hsa-miR-1281 beg:116 end:134 pic:3' CCCTC--TCCTCCTCCGCT 5'& |||| |||| ||||| &5' -GGAGGCAGGA-GAGGC-- 3' RHBDD3 hsa-miR-1291 beg:78 end:96 pic:3' TGACGACCAGAAGTCAGTCCCGGT 5'& |||| || ||||||| &5' -------GTCTAAAG--AGGGCCA 3' RHBDD3 hsa-miR-1301 beg:40 end:56 pic:3' CTTCAGTGAGGGTCCG--TCGACGTT 5'& .||| .|||||| &5' ------------GGGCTGGGCTGCA- 3' RHBDD3 hsa-miR-151-5p beg:187 end:204 pic:3' TGATCTGACACTCGAGGAGCT 5'& ||.||| |||||.|. &5' -CTGGAC------CTCCTTGG 3' RHBDD3 hsa-miR-184 beg:62 end:86 pic:3' TGGGAATAGTCAAGAGGCAGGT 5'& .||| |||.|||.| &5' GCCCGAGCTCCTACTCTGTCTA 3' RHBDD3 hsa-miR-1910 beg:31 end:48 pic:3' TCCGCCGTCCGTG--TCCTGACC 5'& .|| | |||.|||| &5' -------GGGTGCTAAGGGCTGG 3' RHBDD3 hsa-miR-1910 beg:7 end:29 pic:3' TC-CGCCGTCCGTGTCCTGACC 5'& || |.|| |||||||| | || &5' AGAGTGG--GGCACAGG-CAGG 3' RHBDD3 hsa-miR-1914 beg:4 end:25 pic:3' GTCTTCACCCGGCCCGTGTCCC 5'& ||||. |. ||||||||| &5' CAGAGA---GTGGGGCACAGG- 3' RHBDD3 hsa-miR-1976 beg:107 end:130 pic:3' TGTCGTT----CCTCCCGTCCTCC 5'& .||| ||| |||||||| &5' --GGCACCTCTGGA-GGCAGGAG- 3' RHBDD3 hsa-miR-214star beg:5 end:27 pic:3' CGTGTCGTTCACATC-TGTCCGT 5'& .||| |||| | ||||||| &5' --GCAGAGAGTGGGGCACAGGCA 3' RHBDD3 hsa-miR-218 beg:2 end:23 pic:3' TGTACCAA-TCT-AGTTCGTGTT 5'& || ||| | ..|||||. &5' ----GGCAGAGAGTGGGGCACAG 3' RHBDD3 hsa-miR-28-5p beg:65 end:76 pic:3' GAGTTATCTGACACTCGAGGAA 5'& |||||||| &5' -------------GAGCTCCT- 3' RHBDD3 hsa-miR-2909 beg:134 end:154 pic:3' GGTTCTCTACAACCGGGATTG 5'& |||. ||| ||||||. &5' CCAGC--ATGCT-GCCCTAG- 3' RHBDD3 hsa-miR-3148 beg:169 end:188 pic:3' TTCGTGTGTGGTCAA--AAAAGGT 5'& ||||||| ||||.|| &5' --------ACCAGTTTGTTTTTCA 3' RHBDD3 hsa-miR-3180-5p beg:105 end:124 pic:3' GCTGCACCCCGCCTCGCAGACCTTC 5'& ||||| | ||||||.| &5' ------GGGGCA---CCTCTGGAGG 3' RHBDD3 hsa-miR-3183 beg:113 end:134 pic:3' AGGCTCGCTGAGGCTCTCTCCG 5'& ||.|. |.| .||||||| &5' TCTGGA-GGCA---GGAGAGGC 3' RHBDD3 hsa-miR-3196 beg:126 end:152 pic:3' CTCCGGGG------ACGGCGGGGC 5'& |||||||| |||.||||. &5' GAGGCCCCCCAGCATGCTGCCCT- 3' RHBDD3 hsa-miR-324-3p beg:103 end:127 pic:3' GGTCGTCGTGG--ACC-CCGTCA 5'& ||| .||||| ||| ||||| &5' -CAGGGGCACCTCTGGAGGCAG- 3' RHBDD3 hsa-miR-34a beg:134 end:150 pic:3' TGTTGGTCGATTCTGTGACGGT 5'& ||||| |..||||| &5' ----CCAGC----ATGCTGCC- 3' RHBDD3 hsa-miR-34c-5p beg:135 end:150 pic:3' CGTTAGTCGATTGATGTGACGGA 5'& |||| |..||||| &5' -----CAGC-----ATGCTGCC- 3' RHBDD3 hsa-miR-4257 beg:103 end:121 pic:3' GAGTCAGGGGTGGAGACC 5'& ||| ||||||||| &5' --CAGGGG-CACCTCTGG 3' RHBDD3 hsa-miR-4263 beg:146 end:168 pic:3' CCGGT-TC---CGTGAATCTTA 5'& ||| || | .||||||| &5' -GCCCTAGTACGTGTTTAGAAT 3' RHBDD3 hsa-miR-4300 beg:56 end:77 pic:3' CTTCATCAGG-TCGAGGGT 5'& ..|||| || ||||||.| &5' -GGGTAGCCCGAGCTCCTA 3' RHBDD3 hsa-miR-4323 beg:29 end:48 pic:3' AGACTC-CGACACCCCGAC 5'& .||.| ||| |||||| &5' -TTGGGTGCTAA-GGGCTG 3' RHBDD3 hsa-miR-4326 beg:113 end:132 pic:3' CAGACCCTCTGTCTCCTTGT 5'& ||| ||||.||| ||. &5' -TCT-GGAGGCAGGAGAG-- 3' RHBDD3 hsa-miR-449a beg:134 end:150 pic:3' TGGTCGATTGTTATGTGACGGT 5'& ||||| |..||||| &5' -CCAGC-------ATGCTGCC- 3' RHBDD3 hsa-miR-449b beg:134 end:150 pic:3' CGGTCGATTGTTATGTGACGGA 5'& ||||| |..||||| &5' -CCAGC-------ATGCTGCC- 3' RHBDD3 hsa-miR-486-3p beg:132 end:152 pic:3' TAGGACATGACTCGACGGGGC 5'& || .| |||||||. &5' --CCCCAGCAT-GCTGCCCT- 3' RHBDD3 hsa-miR-520a-5p beg:101 end:123 pic:3' TCTT-TCA-TGAAGGGAGACCTC 5'& .||. || .| ||||||||| &5' GGAGCAGGGGCA--CCTCTGGAG 3' RHBDD3 hsa-miR-525-5p beg:100 end:123 pic:3' TCTT-TCA-CGTAGGGAGACCTC 5'& .||. || ||| ||||||||| &5' GGAGCAGGGGCA--CCTCTGGAG 3' RHBDD3 hsa-miR-554 beg:29 end:48 pic:3' TGACCGACTCAGTCCTGATCG 5'& .||| || |||.||.| &5' -TTGGGTGCTA-AGGGCTGG- 3' RHBDD3 hsa-miR-599 beg:6 end:23 pic:3' CAAACTATTTGACTGTGTTG 5'& || |.||||. &5' ----GAGAGTGGGGCACAG- 3' RHBDD3 hsa-miR-601 beg:175 end:197 pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& |. |.. ||| |||.|||| &5' -TTGTTTTTCAA-CCTGGACC- 3' RHBDD3 hsa-miR-618 beg:112 end:132 pic:3' TGAGTCTTCCTGTTCATCTCAAA 5'& ||| |.||| ||.| |||| &5' -CTCTGGAGG-CAGG-AGAG--- 3' RHBDD3 hsa-miR-632 beg:90 end:113 pic:3' AGGGTG---TCCTTCGTCTGTG 5'& |||| .||.|||||. .| &5' --CCACAGTGGGGAGCAGGGGC 3' RHBDD3 hsa-miR-635 beg:53 end:71 pic:3' CCTGTAACAAAGTCA-CGGGTTCA 5'& ||| .|| ||||.|| &5' ------TGTG--GGTAGCCCGAG- 3' RHBDD3 hsa-miR-637 beg:120 end:141 pic:3' TGCGTCTCGGGCTTTCGGGGGTCA 5'& |||| | ||.. ||||||| &5' --GCAG-GA--GAGGCCCCCCAG- 3' RHBDD3 hsa-miR-662 beg:42 end:62 pic:3' GACGACCCGGTGTTGCACCCT 5'& ||||||| | |.||||| &5' --GCTGGGCTGC-ATGTGGG- 3' RHBDD3 hsa-miR-708 beg:65 end:76 pic:3' GGGTCGATCTAACATTCGAGGAA 5'& .||||||| &5' --------------GAGCTCCT- 3' RHBDD3 hsa-miR-877star beg:116 end:133 pic:3' GACCCTCCTCCCTCTTCTCCT 5'& ||||| ||.||||| &5' ------GGAGGCAGGAGAGG- 3' RHBDD3 hsa-miR-885-3p beg:132 end:150 pic:3' ATAGGTGATGTGGGGCGACGGA 5'& || | || | .|||||| &5' ---CC-CCCCAGCATGCTGCC- 3' RHBDD3 hsa-miR-920 beg:58 end:76 pic:3' ATGACGAAGGTGTCGAGGGG 5'& |. || ||||||. &5' ----GTAGCCCGAGCTCCT- 3' RHBDD3 hsa-miR-942 beg:119 end:133 pic:3' GTGTACCGGTTTTGTCTCTTCT 5'& ||| .||||.| &5' -----GGCA-----GGAGAGG- 3' RHBDD3 hsv1-miR-H13 beg:137 end:154 pic:3' GGTCACGAGCGTGAAGCGGGATT 5'& |||. .||||||. &5' ---------GCATGCTGCCCTAG 3' RHBDD3 hsv1-miR-H14-3p beg:3 end:24 pic:3' CAGCGTG-CGCGGGCCGTGTCT 5'& ||| | |. |||||||. &5' ---GCAGAGAGTGGGGCACAGG 3' RHBDD3 hsv1-miR-H4star beg:9 end:27 pic:3' TGATCGCTCAATCTGTCCGTTC 5'& ||.|.| |||||||.| &5' ---AGTGGGGC--ACAGGCAGG 3' RHBDD3 hsv2-miR-H13 beg:137 end:154 pic:3' GTCACGAGCGTGAAACGGGATT 5'& |||. |||||||. &5' --------GCATGCTGCCCTAG 3' RHBDD3 hsv2-miR-H9-3p beg:85 end:105 pic:3' CTCCTCCTCTGGCTCCACCCTT 5'& |||| .|| |||||.| &5' ---GAGG--GCCACAGTGGGGA 3' RHBDD3 sv40-miR-S1-3p beg:105 end:128 pic:3' TGAGTCCCGTA-----CTTTGTCCG 5'& .||||| ||..|||| &5' ----GGGGCACCTCTGGAGGCAGG- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-1200 chr22 29265614 G A tgcCAGGAGccccca CUCCUGAG m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-1227-5p chr22 29265614 G A tgccaggGGCCCCca GUGGGGCC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-128-1-5p chr22 29265614 G A tgccaggGGCCCCca CGGGGCCG m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-128-2-5p chr22 29265614 G A tgccaggGGCCCCCa GGGGGCCG m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-1343-3p chr22 29265614 G A tgCCAGGAGccccca CUCCUGGG m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-185-3p chr22 29265614 G A tgccaggAGCCCCca AGGGGCUG m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-1976 chr22 29265614 G A tgcCAGGAGccccca CCUCCUGC m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-210-5p chr22 29265614 G A tgcCAGGGGCcccca AGCCCCUG m7b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-2861 chr22 29265614 G A tgccaggGGCCCCca GGGGCCUG m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-296-5p chr22 29265614 G A tgccaGGGGCCCcca AGGGCCCC m7b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-331-3p chr22 29265614 G A tgCCAGGGGCcccca GCCCCUGG m8a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-3653-5p chr22 29265614 G A tgcCAGGAGccccca CCUCCUGA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-378a-5p chr22 29265614 G A tgcCAGGAGccccca CUCCUGAC m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4268 chr22 29265614 G A tgccAGGAGCCccca GGCUCCUC m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4283 chr22 29265614 G A tgccagGAGCCCCca UGGGGCUC m7b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4284 chr22 29265614 G A tgccagGAGCCCcca GGGCUCAC m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4292 chr22 29265614 G A tgCCAGGGGccccca CCCCUGGG m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4308 chr22 29265614 G A tgCCAGGGgccccca UCCCUGGA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4437 chr22 29265614 G A tgccagGAGCCCcca UGGGCUCA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4448 chr22 29265614 G A tgccAGGAGCCccca GGCUCCUU m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4489 chr22 29265614 G A tgccaggAGCCCCca UGGGGCUA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4492 chr22 29265614 G A tgccaggAGCCCCca GGGGCUGG m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4508 chr22 29265614 G A tgccaggAGCCCCca GCGGGGCU m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4674 chr22 29265614 G A tgccagGAGCCCcca CUGGGCUC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4675 chr22 29265614 G A tgccaggAGCCCCca GGGGCUGU m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-4749-3p chr22 29265614 G A tgccAGGGGCcccca CGCCCCUC m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-5088-5p chr22 29265614 G A tgccagGAGCCCcca CAGGGCUC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6085 chr22 29265614 G A tgccaggAGCCCCca AAGGGGCU m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-660-3p chr22 29265614 G A tgcCAGGAGccccca ACCUCCUG m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6724-5p chr22 29265614 G A tgccagGGGCCCcca CUGGGCCC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6762-5p chr22 29265614 G A tgccaggGGCCCCca CGGGGCCA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6769a-3p chr22 29265614 G A tgccAGGGGCcccca GAGCCCCU m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6772-3p chr22 29265614 G A tgccAGGAGCcccca UUGCUCCU m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6773-5p chr22 29265614 G A tgccagGGGCCCcca UUGGGCCC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6783-3p chr22 29265614 G A tgCCAGGAgccccca UUCCUGGG m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6791-5p chr22 29265614 G A tgCCAGGGGccccca CCCCUGGG m7a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6801-3p chr22 29265614 G A tgcCAGGGGccccca ACCCCUGC m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6810-3p chr22 29265614 G A tgcCAGGGGccccca UCCCCUGC m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6813-5p chr22 29265614 G A tgccaggAGCCCCca CAGGGGCU m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6845-5p chr22 29265614 G A tgccaggGGCCCCca CGGGGCCA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6846-5p chr22 29265614 G A tgccaggAGCCCCCa UGGGGGCU m7b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6848-5p chr22 29265614 G A tgccaggAGCCCCCa UGGGGGCU m7b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-6852-5p chr22 29265614 G A tgCCAGGGgccccca CCCUGGGG m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-7160-3p chr22 29265614 G A tgccagGGGCCCcca CAGGGCCC m6c HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-762 chr22 29265614 G A tgccaggAGCCCCca GGGGCUGG m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-874-5p chr22 29265614 G A tgccaGGGGCCccca CGGCCCCA m6b HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma] RHBDD3 chr22:g.29265614G>A COSM1616328 hsa-miR-939-3p chr22 29265614 G A tgCCAGGGgccccca CCCUGGGC m6a HCC28T [liver][NS][carcinoma][hepatocellular_carcinoma]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region RHBDD3 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr22:29661027 7-mer-m8 7 ncRNA RHBDD3 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr22:29661162 7-mer-m8 7 ncRNA RHBDD3 High_conserved miR-138/138ab chr22:29663515 7-mer-m8 4 5pUTR, ncRNA RHBDD3 High_conserved miR-148ab-3p/152 chr22:29656110 7-mer-A1 18 3pUTR, CDS RHBDD3 High_conserved miR-148ab-3p/152 chr22:29663389 7-mer-m8 11 ncRNA RHBDD3 High_conserved miR-153 chr22:29656848 7-mer-m8 18 CDS RHBDD3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr22:29659897 7-mer-m8 53 CDS, ncRNA RHBDD3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr22:29660035 7-mer-m8 40 CDS, ncRNA RHBDD3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr22:29660140 7-mer-m8 60 CDS, ncRNA RHBDD3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr22:29661544 7-mer-m8 49 CDS, ncRNA RHBDD3 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr22:29661026 7-mer-m8 7 ncRNA RHBDD3 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr22:29661161 7-mer-m8 9 ncRNA RHBDD3 High_conserved miR-184 chr22:29663451 7-mer-m8 9 5pUTR, ncRNA RHBDD3 High_conserved miR-199ab-5p chr22:29657260 7-mer-A1 9 3pUTR RHBDD3 High_conserved miR-214/761/3619-5p chr22:29660142 7-mer-m8 53 CDS, ncRNA RHBDD3 High_conserved miR-214/761/3619-5p chr22:29660193 7-mer-A1 58 CDS, ncRNA RHBDD3 High_conserved miR-214/761/3619-5p chr22:29661543 7-mer-A1 20 CDS, ncRNA RHBDD3 High_conserved miR-214/761/3619-5p chr22:29663909 7-mer-A1 53 5pUTR, ncRNA RHBDD3 High_conserved miR-216a chr22:29660089 7-mer-m8 13 CDS, ncRNA RHBDD3 High_conserved miR-218/218a chr22:29661388 7-mer-A1 11 ncRNA RHBDD3 High_conserved miR-218/218a chr22:29661653 7-mer-m8 20 5pUTR, ncRNA RHBDD3 High_conserved miR-22/22-3p chr22:29660000 7-mer-m8 11 CDS, ncRNA RHBDD3 High_conserved miR-24/24ab/24-3p chr22:29657314 7-mer-A1 7 CDS RHBDD3 High_conserved miR-24/24ab/24-3p chr22:29659867 8-mer 40 CDS, ncRNA RHBDD3 High_conserved miR-24/24ab/24-3p chr22:29660147 7-mer-m8 53 CDS, ncRNA RHBDD3 High_conserved miR-29abcd chr22:29656008 7-mer-A1 4 3pUTR RHBDD3 High_conserved miR-31 chr22:29656740 7-mer-A1 4 3pUTR, CDS, ncRNA RHBDD3 High_conserved miR-103a/107/107ab chr22:29655900 7-mer-m8 16 3pUTR RHBDD3 High_conserved miR-103a/107/107ab chr22:29656405 8-mer 42 3pUTR, CDS RHBDD3 High_conserved miR-103a/107/107ab chr22:29656796 7-mer-A1 13 3pUTR, CDS, ncRNA RHBDD3 High_conserved miR-103a/107/107ab chr22:29661545 7-mer-m8 44 CDS, ncRNA RHBDD3 High_conserved miR-338/338-3p chr22:29659967 7-mer-m8 51 CDS, ncRNA RHBDD3 High_conserved miR-338/338-3p chr22:29661479 7-mer-A1 47 CDS, ncRNA RHBDD3 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr22:29659924 8-mer 36 CDS, ncRNA RHBDD3 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr22:29661571 7-mer-m8 11 CDS, ncRNA RHBDD3 High_conserved miR-34ac/34bc-5p/449abc/449c-5p chr22:29663387 7-mer-m8 11 ncRNA RHBDD3 High_conserved miR-455-5p chr22:29660227 8-mer 38 ncRNA RHBDD3 High_conserved miR-128/128ab chr22:29660127 7-mer-m8 4 CDS, ncRNA RHBDD3 Medium_conserved miR-539/539-5p chr22:29661239 7-mer-A1 11 ncRNA RHBDD3 Medium_conserved miR-542-3p chr22:29656708 7-mer-m8 40 3pUTR, CDS, ncRNA RHBDD3 Medium_conserved miR-185/882/3473/4306/4644 chr22:29660210 7-mer-m8 36 ncRNA RHBDD3 Medium_conserved miR-28-5p/708/1407/1653/3139 chr22:29655973 8-mer 9 3pUTR RHBDD3 Medium_conserved miR-28-5p/708/1407/1653/3139 chr22:29659849 7-mer-m8 31 CDS, ncRNA RHBDD3 Medium_conserved miR-320abcd/4429 chr22:29661215 7-mer-m8 16 ncRNA RHBDD3 Medium_conserved miR-326/330/330-5p chr22:29656353 7-mer-m8 13 3pUTR, CDS RHBDD3 Medium_conserved miR-328a/328b-3p chr22:29655953 7-mer-m8 11 3pUTR RHBDD3 Medium_conserved miR-328a/328b-3p chr22:29661457 7-mer-m8 20 ncRNA RHBDD3 Medium_conserved miR-328a/328b-3p chr22:29664105 7-mer-A1 18 5pUTR RHBDD3 Medium_conserved miR-339b/339-5p/3586-5p chr22:29661365 7-mer-A1 7 ncRNA RHBDD3 Medium_conserved miR-346 chr22:29656855 7-mer-A1 16 3pUTR RHBDD3 Medium_conserved miR-370 chr22:29660114 8-mer 29 CDS, ncRNA RHBDD3 Medium_conserved miR-370 chr22:29660304 7-mer-m8 13 ncRNA RHBDD3 Medium_conserved miR-370 chr22:29661431 7-mer-A1 13 ncRNA RHBDD3 Medium_conserved miR-376c/741-5p chr22:29657399 7-mer-m8 11 CDS RHBDD3 Medium_conserved miR-411 chr22:29661081 7-mer-A1 13 ncRNA RHBDD3 Medium_conserved miR-485-5p/1698/1703/1962 chr22:29657345 7-mer-m8 13 CDS RHBDD3 Medium_conserved miR-495/1192 chr22:29655866 7-mer-m8 11 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score RHBDD3 RAID01033975 hsa-miR-6514-3p miRNA MIMAT0025485 RHBDD3 mRNA 25807 Prediction 0.1828 RHBDD3 RAID01363677 hsa-miR-328-3p miRNA MIMAT0000752 RHBDD3 mRNA 25807 Prediction 0.1828 RHBDD3 RAID01385193 hsa-miR-495-3p miRNA MIMAT0002817 RHBDD3 mRNA 25807 Prediction 0.1828 RHBDD3 RAID02083360 hsa-miR-6801-3p miRNA MIMAT0027503 RHBDD3 mRNA 25807 Prediction 0.1828