DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence HCK ATTTA 184-309 2128-2132 HCK WWATTTAWW 184-309 2126-2134 HCK WWWATTTAWWW 184-309 2125-2135

DNA & RNA Element - circRNADb circRNA ID Chrom Start End Strand Samples hsa_circ_06934 chr20 30661121 30662524 + leukemia

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-HCK-antisense.3 NM_001172131Tchr20:30674434-30674581 expressed HCK 3055 protein-coding - not_available hsa-circ-HCK-overlap.1 NM_001172129Tchr20:30689119-30689465 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.16 NM_001172130Tchr20:30661121-30667680 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.18 NM_001172132Tchr20:30661121-30667680 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.2 NM_001172131Tchr20:30681666-30686938 none HCK 3055 protein-coding not_available not_available hsa-circ-HCK.23 NM_001172133Tchr20:30676370-30681819 expressed HCK 3055 protein-coding x not_available hsa-circ-HCK.30 NM_001172132Tchr20:30671696-30672346 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.31 NM_002110Tchr20:30659464-30676447 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.33 NM_001172131Tchr20:30659464-30676447 expressed HCK 3055 protein-coding + not_available hsa-circ-HCK.8 NM_001172129Tchr20:30681665-30686938 expressed HCK 3055 protein-coding + not_available

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004508 hsa-miR-92a-2* 3055 HCK cauUACGUUGUUUAGGG-GUGGg || |: ||:: ||| |||| accAUCCGCCAGGGCCCACACCc 2 20 61 83 [hg19:20:30689383-30689405:+] 0.4968 123 0 -21.38 -0.1205 MIMAT0004518 hsa-miR-16-2* 3055 HCK auUUCGUCGUGUCA-UUAUAAcc || :||:: | | |||||| caAAAUAGUGAAAUGAAUAUUua 3 21 280 302 [hg19:20:30689602-30689624:+] 0.6142 135 0 -4.88 -0.3158 MIMAT0004558 hsa-miR-181a-2* 3055 HCK ccaugucAGUUGCCA-GUCACCa ||| | || |||||| aguuuccUCAUCUGUCCAGUGGg 2 16 122 144 [hg19:20:30689444-30689466:+] 0.5817 123 6 -13.64 -0.5454 MIMAT0009197 hsa-miR-205* 3055 HCK cuuGAAGUGAGGUGACUUUAg :|||| :| |||||| aacUUUCAAAAUAGUGAAAUg 2 19 274 294 [hg19:20:30689596-30689616:+] 0.6142 126 6 -10.84 -0.2850 MIMAT0004593 hsa-miR-130a* 3055 HCK cgUCUGUCAUCGUGUUA-CACUu :|| | | || ||| |||| agGGAAACUUUCAAAAUAGUGAa 2 21 269 291 [hg19:20:30689591-30689613:+] 0.6067 120 0 -7.53 -1.2431 MIMAT0004615 hsa-miR-195* 3055 HCK ccUCGUCGUGUCGGUUAUAAcc | :||:: | : |||||| aaAAUAGUGAAAUGAAUAUUua 3 21 281 302 [hg19:20:30689603-30689624:+] 0.6142 132 0 -4.44 -0.3158 MIMAT0004677 hsa-miR-34c-3p 3055 HCK ggaccggcacaccaAUCACUaa |||||| ggaaacuuucaaaaUAGUGAaa 3 9 271 292 [hg19:20:30689593-30689614:+] 0.6067 120 0 -7.47 -0.2202 MIMAT0002808 hsa-miR-511 3055 HCK acugacgucUCGUUUUCUGUg | :||||||:| gaauauuuaAAUAAAAGAUAu 2 13 294 314 [hg19:20:30689616-30689636:+] 0.6142 132 0 -8.64 -0.1104 MIMAT0002860 hsa-miR-516b* 3055 HCK ugggagacuuUCCUUCGu ||||||| ugacauucucAGGAAGCc 2 9 191 208 [hg19:20:30689513-30689530:+] 0.6292 140 7 -14.62 -0.4730 MIMAT0006778 hsa-miR-516a-3p 3055 HCK ugggagacuuUCCUUCGu ||||||| ugacauucucAGGAAGCc 2 9 191 208 [hg19:20:30689513-30689530:+] 0.6292 140 7 -14.62 -0.4730 MIMAT0004784 hsa-miR-455-3p 3055 HCK cacauauacggguACCUGACg ||||||| ccaguggguagguUGGACUGg 2 9 137 157 [hg19:20:30689459-30689479:+] 0.5817 140 7 -15.20 -0.4249 MIMAT0003225 hsa-miR-561 3055 HCK ugaaguuCCUAGAAUUUGAAAc ||| ||||||| gugauuuGGAAGGGAAACUUUc 2 16 259 280 [hg19:20:30689581-30689602:+] 0.6067 143 7 -8.87 -0.4860 MIMAT0004794 hsa-miR-551b* 3055 HCK ccAGAGUGGGUG-CGA-ACUAAAg |:|:| ::|| ||| |||||| gaUUUUAGUUACAGCUGUGAUUUg 2 21 243 266 [hg19:20:30689565-30689588:+] 0.6142 131 6 -14.72 -0.7663 MIMAT0003244 hsa-miR-579 3055 HCK uuagcgccaaauauggUUUACUu |||||| aacuuucaaaauagugAAAUGAa 2 8 274 296 [hg19:20:30689596-30689618:+] 0.6142 120 6 -8.03 -0.6052 MIMAT0003245 hsa-miR-580 3055 HCK ggauuacUAAGUAGUAAGAGUu || :: |||||||| auccacaAUCUGACAUUCUCAg 2 16 181 202 [hg19:20:30689503-30689524:+] 0.6292 151 7 -13.15 -0.3855 MIMAT0003252 hsa-miR-586 3055 HCK ccuGGAUUU-UUAUGUUACGUAu :| ||| |:|: |||| || cuuUCAAAAUAGUGAAAUGAAUa 2 20 276 298 [hg19:20:30689598-30689620:+] 0.6142 126 0 -5.28 -0.1101 MIMAT0003292 hsa-miR-623 3055 HCK uggGUUGUCG-GGGACGUUCCCUa ||:| |: ::|| |||||| uuaCAGCUGUGAUUUGGAAGGGAa 2 21 251 274 [hg19:20:30689573-30689596:+] 0.6142 127 6 -20.70 -0.2559 MIMAT0004919 hsa-miR-541* 3055 HCK ucACCCUGGCUGUCGUCUUAG-GAAa | || : ||| | | |||| ||| ggUAGGUUGGACUGGAAAAUCUCUUu 2 24 143 168 [hg19:20:30689465-30689490:+] 0.6054 127 0 -17.68 -0.8533 MIMAT0004952 hsa-miR-665 3055 HCK uccccGGAGUCGGAGGACCa ::|| ::|||||| ugauaUUUCUAUUUCCUGGa 2 16 216 235 [hg19:20:30689538-30689557:+] 0.6292 131 6 -16.57 -0.2404 MIMAT0005586 hsa-miR-1231 3055 HCK cgucgacAGGCGGGUCUGUg | | |||||||| cccuuccUACUCCCAGACAc 2 14 83 102 [hg19:20:30689405-30689424:+] 0.5577 149 7 -20.97 -0.1664 MIMAT0005591 hsa-miR-1236 3055 HCK gaccucucuguuccCCUUCUCc |||||:| uacagcugugauuuGGAAGGGa 2 9 252 273 [hg19:20:30689574-30689595:+] 0.6142 124 0 -14.99 -0.1017 MIMAT0005863 hsa-miR-1200 3055 HCK cuccgAGUCU-UACCGAGUCCUc || || || ||||||| cacaaUCUGACAU-UCUCAGGAa 2 18 184 205 [hg19:20:30689506-30689527:+] 0.6292 146 7 -12.95 -1.0943 MIMAT0005898 hsa-miR-1246 3055 HCK ggAC-GAGGUUUUUAGGUaa || |||: : |||||| uuUGACUCUUGCAAUCCAca 3 18 168 187 [hg19:20:30689490-30689509:+] 0.6292 132 0 -11.80 -0.1074 MIMAT0005907 hsa-miR-1256 3055 HCK ucgaucacUCUUCAGUUACGGa ||| | |||||| uaaauaaaAGAUAUAAAUGCCa 2 15 301 322 [hg19:20:30689623-30689644:+] 0.5769 122 6 -9.51 -0.6190 MIMAT0005912 hsa-miR-548g 3055 HCK cauguuuucauuaaUGUCAAAa ||||||| cccucgcuucagccACAGUUUc 2 9 106 127 [hg19:20:30689428-30689449:+] 0.5697 140 7 -6.31 -0.1206 MIMAT0005929 hsa-miR-1275 3055 HCK cugucggagaGGGGGUg |||||| ucucaggaagCCCCCAa 2 8 197 213 [hg19:20:30689519-30689535:+] 0.6292 120 6 -16.71 -0.1240 MIMAT0005949 hsa-miR-664 3055 HCK acauccgaccccuaUUUACUUAu |||||||| cuuucaaaauagugAAAUGAAUa 2 10 276 298 [hg19:20:30689598-30689620:+] 0.6142 145 7 -7.75 -1.3197 MIMAT0009977 hsa-miR-2052 3055 HCK uguaaugacaAUAGUUUUGu | ||||||: gaagggaaacUUUCAAAAUa 2 11 267 286 [hg19:20:30689589-30689608:+] 0.6067 126 0 -7.38 -0.1094 MIMAT0009979 hsa-miR-2054 3055 HCK uuauUUAAUUUAAAUAU-AAUGUc ::||::|||| || ||||| gaauGGUUGGAUUU-UAGUUACAg 2 20 234 256 [hg19:20:30689556-30689578:+] 0.6142 129 0 -14.46 -1.0047 MIMAT0014981 hsa-miR-3119 3055 HCK cggUAGUUUC-A-AUUUUCGGu || |||| | |||| ||| uaaAUAAAAGAUAUAAAUGCCa 2 18 301 322 [hg19:20:30689623-30689644:+] 0.5769 127 0 -8.18 -0.1948 MIMAT0014983 hsa-miR-3121 3055 HCK acaggaAACGGAUGAGAUAAAu ||| : :||||||| cccaagUUGAUAUUUCUAUUUc 2 17 209 230 [hg19:20:30689531-30689552:+] 0.6292 148 7 -10.47 -0.7628 MIMAT0015013 hsa-miR-548u 3055 HCK gcGUUUUC---AUUAACG---UCAGAAAc :||||| ||| ||| ||||||| aaUAAAAGAUAUAAAUGCCAAAGUCUUUa 2 22 303 331 [hg19:20:30689625-30689653:+] 0.5769 159 7 -12.01 -1.1047 MIMAT0015039 hsa-miR-3165 3055 HCK acuccaguguAACG-UAGGUGga |||| |||||| uuuuugacucUUGCAAUCCACaa 3 13 166 188 [hg19:20:30689488-30689510:+] 0.6292 131 0 -13.96 -0.1081 MIMAT0015056 hsa-miR-3179 3055 HCK ugcaaauuuaaaGU-GGGGAAGa || ||||||| cgccagggcccaCACCCCCUUCc 2 11 67 89 [hg19:20:30689389-30689411:+] 0.4968 141 7 -15.73 -0.1277 MIMAT0015076 hsa-miR-3192 3055 HCK aaGGUGACGAUGUUGGAGGGUCu || || | | | ||||||| acCCCCU--UCCUA-CUCCCAGa 2 22 80 99 [hg19:20:30689402-30689421:+] 0.5577 144 7 -19.48 -0.6575 MIMAT0015089 hsa-miR-3202 3055 HCK uaaUUUCGAG-AAGAGGGAAGGu |::|| | | ||||||| gccAGGGCCCACACCCCCUUCCu 2 20 68 90 [hg19:20:30689390-30689412:+] 0.5577 146 7 -16.23 -0.2176 MIMAT0016846 hsa-miR-4297 3055 HCK gugucuguCCUUCCgu |||||| ugugauuuGGAAGGga 3 9 258 273 [hg19:20:30689580-30689595:+] 0.5992 120 0 -11.50 -0.2378 MIMAT0016863 hsa-miR-4311 3055 HCK gugugagucgAGAGAAAg ||||||| gacuggaaaaUCUCUUUu 2 9 152 169 [hg19:20:30689474-30689491:+] 0.6054 140 7 -10.87 -0.9979 MIMAT0016868 hsa-miR-4314 3055 HCK gacAGGGUAAAGGGUCUc |||:| ||||||| ccuUCCUA-CUCCCAGAc 2 16 84 100 [hg19:20:30689406-30689422:+] 0.5577 149 7 -16.93 -0.1868 MIMAT0016869 hsa-miR-4318 3055 HCK ucguacaUGGGUGUCAc | ||||||| ucgcuucAGCCACAGUu 2 11 109 125 [hg19:20:30689431-30689447:+] 0.5697 142 7 -11.44 -0.4089 MIMAT0016876 hsa-miR-4324 3055 HCK aaUUCCAAUCCCAGAGUCCc || | | ||||||| acAAUCUGACAUUCUCAGGa 2 19 185 204 [hg19:20:30689507-30689526:+] 0.6292 142 7 -10.44 -1.0962 MIMAT0016883 hsa-miR-4251 3055 HCK aaccgggaaAAGAGUCc ||||||| aaucugacaUUCUCAGg 2 9 187 203 [hg19:20:30689509-30689525:+] 0.6292 140 7 -15.16 -0.6241 MIMAT0016924 hsa-miR-4330 3055 HCK cguuccgagacUAGACUcc |||||| ugcaauccacaAUCUGAca 3 9 177 195 [hg19:20:30689499-30689517:+] 0.6292 120 0 -7.08 -0.1350 MIMAT0000095 hsa-miR-96 3055 HCK ucguUUUUACACGAUCACGGUUu |||| | : | |||||| aaauAAAAGAUAUAAAUGCCAAa 2 20 302 324 [hg19:20:30689624-30689646:+] 0.5769 127 6 -11.21 -0.1157 MIMAT0000257 hsa-miR-181b 3055 HCK uggguggcUGUCG--UUACUUACAa |:||: ||||||| | cuuucaaaAUAGUGAAAUGAAUAUu 2 16 276 300 [hg19:20:30689598-30689622:+] 0.6142 122 0 -10.03 -0.1296 MIMAT0000259 hsa-miR-182 3055 HCK ucacacucaagAUGGUAACGGUUu ||: | |||||| uaaauaaaagaUAUAAAUGCCAAa 2 14 301 324 [hg19:20:30689623-30689646:+] 0.5769 121 6 -9.62 -0.1157 MIMAT0000265 hsa-miR-204 3055 HCK ucCGUAUCCUACUGUUUCCCUu || |: ||| :|||||| caGC-UGUGAUUUGGAAGGGAa 2 21 254 274 [hg19:20:30689576-30689596:+] 0.6142 134 6 -14.00 -0.2492 MIMAT0000268 hsa-miR-211 3055 HCK uccgcuucCUACUGUUUCCCUu ||| :|||||| acagcuguGAUUUGGAAGGGAa 2 15 253 274 [hg19:20:30689575-30689596:+] 0.6142 130 6 -14.69 -0.2514 MIMAT0000441 hsa-miR-9 3055 HCK agUA-UGUCGAUCUAU-UGGUUUCu || | || || | | :|||||| aaAUAAAAGAUAUAAAUGCCAAAGu 2 22 302 326 [hg19:20:30689624-30689648:+] 0.5769 139 6 -11.39 -0.2939 MIMAT0000456 hsa-miR-186 3055 HCK ucggguuuuCCUCUUA-AGAAAc ||| ||| ||||| gguuggacuGGAAAAUCUCUUUu 2 14 147 169 [hg19:20:30689469-30689491:+] 0.6054 121 0 -8.82 -0.8039 MIMAT0005796 hsa-miR-1271 3055 HCK acucacgaacgauccACGGUUc |||||| aauaaaagauauaaaUGCCAAa 2 8 303 324 [hg19:20:30689625-30689646:+] 0.5769 120 6 -6.52 -0.1192 MIMAT0004953 hsa-miR-873 3055 HCK ucCUCUGAGUGUUCAAGGACg || |:|: | | |||||| uuGAUAUUU-CUAUUUCCUGg 2 20 215 234 [hg19:20:30689537-30689556:+] 0.6292 125 6 -9.03 -0.1140

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G014209 HCK Homo sapiens 3055 9822652 -77 -10 R27201; HS$HCK_01; Binding factors: Sp1 , Sp1 //-44 3 R27202; HS$HCK_02; Binding factors: Sp1 , Sp1

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile HCK hsa-miR-516a-3p beg:192 end:208 pic:3' TGGGAGACTTTCCTTCGT 5'& |..||| ||||||| &5' ATTCTC----AGGAAGC- 3' HCK hsa-miR-516bstar beg:192 end:208 pic:3' TGGGAGACTTTCCTTCGT 5'& |..||| ||||||| &5' ATTCTC----AGGAAGC- 3' HCK hsa-miR-18astar beg:0 end:19 pic:3' GGTCTTCCTCGTGAATCCCGTCA 5'& |.|||| || ||||||| &5' ----AGGGAGGACC-AGGGCAG- 3' HCK hsa-miR-580 beg:191 end:202 pic:3' GGATTACTAAGTAGTAAGAGTT 5'& ||||||||. &5' -------------CATTCTCAG 3' HCK hsa-miR-874 beg:0 end:19 pic:3' AGCCAGGGAGCCCGGTCCCGTC 5'& || || ||||||||| &5' --GGGA----GGACCAGGGCAG 3' HCK hsa-miR-4318 beg:108 end:125 pic:3' TCGTACATGGGTGTCAC 5'& || | ||||||| &5' -GCTTC-AGCCACAGT- 3' HCK hsa-miR-1231 beg:84 end:103 pic:3' CGTCGACAGGC---GGGTCTGTG 5'& ||| ||||||||| &5' -------TCCTACTCCCAGACAC 3' HCK mcv-miR-M1-3p beg:45 end:63 pic:3' AAGTCCTTCTCTTAGGTCGTGT 5'& ||| | |||||||| &5' ---AGGT---GGCTCCAGCAC- 3' HCK hsa-miR-331-3p beg:9 end:28 pic:3' AAGATCCTATCCGGGTCCCCG 5'& ||| ||| ||||||| &5' ----AGGGCAGGGCCAGGGG- 3' HCK hsa-miR-3179 beg:76 end:89 pic:3' TGCAAATTTAAAGT-GGGGAAGA 5'& || ||||||| &5' ------------CACCCCCTTC- 3' HCK hsa-miR-1200 beg:186 end:205 pic:3' CTCCGAGTCTTACCGAGTCCTC 5'& || || ||||||| &5' -----TCTGACATTCTCAGGA- 3' HCK ebv-miR-BART9star beg:122 end:143 pic:3' CAAAGGTTAAGTCCCAGGTCAT 5'& |||||| || |||||||. &5' GTTTCCTCATCT--GTCCAGTG 3' HCK hsa-miR-3200 beg:34 end:53 pic:3' GTCTGGACTCATCG-CGTTCCAC 5'& || ||.|| |||||||| &5' ------TG-GTGGCTGCAAGGTG 3' HCK hsa-miR-4296 beg:65 end:81 pic:3' ACTCGGACTCGGGTGTA 5'& ||| |.||||||| &5' ---GCCAGGGCCCACA- 3' HCK hcmv-miR-UL36star beg:141 end:161 pic:3' CGTGCAACTTTTGTGGACCTTT 5'& |.| ||||.| ||||||| &5' GTAGGTTGGA-----CTGGAAA 3' HCK hsa-miR-1225-5p beg:7 end:35 pic:3' GGGGGGTGACCCGG-----CATGGGTG 5'& || .| ||||| ||.|||| &5' -CCAGGGCAGGGCCAGGGGGTGCCCA- 3' HCK hsa-miR-1236 beg:253 end:273 pic:3' GACCTCTCTGTTCCCCTTCTCC 5'& | | ||. |||||.| &5' --GCTGTGATTT--GGAAGGG- 3' HCK hsa-miR-1243 beg:122 end:142 pic:3' GTGAGGATATTAACTAGGTCAA 5'& .|||| || .|||||| &5' --TTCCTC--ATCTGTCCAGT- 3' HCK hsa-miR-1255a beg:119 end:135 pic:3' TTAGATGAAAGAAACGAGTAGGA 5'& | |||| ||||||. &5' -----AGTTTC----CTCATCT- 3' HCK hsa-miR-1255b beg:113 end:135 pic:3' TTGGTGAAAGAAACGAGTAGGC 5'& |.|||| |.| ||||||.| &5' AGCCACAGTTTC--CTCATCTG 3' HCK hsa-miR-1261 beg:316 end:332 pic:3' TTCGGTTTCGGAATAGGTA 5'& |||||||.||| || &5' --GCCAAAGTCTTTACC-- 3' HCK hsa-miR-1270 beg:116 end:141 pic:3' TGTGTCGAGAAGGTATAGAGGTC 5'& |||||.|. .||| | ||||| &5' -CACAGTTTCCTCATCTGTCCAG 3' HCK hsa-miR-1291 beg:0 end:24 pic:3' TGACGACCAGAA--GTCA-GTCCCGGT 5'& || ||| |||||||| &5' ------GGGAGGACCAGGGCAGGGCCA 3' HCK hsa-miR-1301 beg:22 end:49 pic:3' CTTCAGTGAGGGTCCG---TCGACGTT 5'& |..|| ||||||. .||||||| &5' GGGGTG---CCCAGGTGGTGGCTGCAA 3' HCK hsa-miR-1306 beg:60 end:80 pic:3' GT-GGTGGTCTCGGTTGCA 5'& || ||.||||.||| || &5' CATCCGCCAGGGCCCAC-- 3' HCK hsa-miR-1321 beg:74 end:91 pic:3' TAGTGTAAGTGGAGGGAC 5'& |||| | |||.||| &5' --CACACCC-CCTTCCT- 3' HCK hsa-miR-133a beg:0 end:13 pic:3' GTCGACCAACTTCC-CCTGGTTT 5'& |.|| ||||||. &5' ----------AGGGAGGACCAG- 3' HCK hsa-miR-133b beg:0 end:13 pic:3' ATCGACCAACTTCC-CCTGGTTT 5'& |.|| ||||||. &5' ----------AGGGAGGACCAG- 3' HCK hsa-miR-145 beg:139 end:159 pic:3' TCCCTAAGGACCCTTTTGACCTG 5'& ||| || ..|||||| &5' -GGGTA----GGTTGGACTGGA- 3' HCK hsa-miR-146b-3p beg:2 end:18 pic:3' GGTCTTGACTCAGGTGTCCCGT 5'& ||| | ||||||| &5' --------GAGGAC-CAGGGCA 3' HCK hsa-miR-149 beg:4 end:26 pic:3' CCCTCACTTCTG----TGCCTCGGTCT 5'& ||.||| .| |.|||||. &5' ------GAGGACCAGGGCAGGGCCAGG 3' HCK hsa-miR-1915star beg:0 end:21 pic:3' CCGGGCCCGTC--GTTCCGTTCCA 5'& ||| .| ||.||||.|| &5' -----GGGAGGACCAGGGCAGGG- 3' HCK hsa-miR-193a-5p beg:60 end:79 pic:3' AGTAGAGCGGGCGTTTCTGGGT 5'& |||| |||| |.|.|||| &5' -CATC-CGCC----AGGGCCCA 3' HCK hsa-miR-197 beg:23 end:42 pic:3' CGACCCACCTCTTCCACCACTT 5'& ||||| ||||||||. &5' ---GGGTGCCC-AGGTGGTGG- 3' HCK hsa-miR-202 beg:194 end:226 pic:3' AAGGGTA---CGGGA-------TATGGAGA 5'& |||.|| |||| |||..||| &5' TTCTCAGGAAGCCCCCAAGTTGATATTTCT 3' HCK hsa-miR-204 beg:253 end:275 pic:3' TCCGTATCCTACTG---TTTCCCTT 5'& || .|||. .||||||| &5' --GCT----GTGATTTGGAAGGGAA 3' HCK hsa-miR-205star beg:219 end:238 pic:3' CTTGAAG-TGAGGTGACTTTAG 5'& |.||| |.|.| |||.||| &5' --ATTTCTATTTC-CTGGAAT- 3' HCK hsa-miR-206 beg:180 end:200 pic:3' GGTGTGTGAAGGAATGTAAGGT 5'& ||||| ||. ||||||. &5' CCACAA---TCTG-ACATTCT- 3' HCK hsa-miR-26b beg:220 end:245 pic:3' TGGAT--AGGACTTAATGAACTT 5'& .||| |||||.| |. |||.| &5' -TCTATTTCCTGGAATGGTTGGA 3' HCK hsa-miR-27a beg:243 end:263 pic:3' CGCCTTGAATCGG---TGACACTT 5'& .||||. .|||||| &5' ------TTTAGTTACAGCTGTGA- 3' HCK hsa-miR-27b beg:243 end:263 pic:3' CGTCTTGAATCGG---TGACACTT 5'& .||||. .|||||| &5' ------TTTAGTTACAGCTGTGA- 3' HCK hsa-miR-2861 beg:56 end:78 pic:3' GGCG-GGT-GGCGGTCCGGGG 5'& || ||| |||||||| ||| &5' --GCACCATCCGCCAGGGCCC 3' HCK hsa-miR-3074 beg:203 end:223 pic:3' GCCACGGATGACTCGACTATAG 5'& ||| | ||.||||||. &5' ----GCCCCCA-AGTTGATATT 3' HCK hsa-miR-3167 beg:215 end:238 pic:3' TGTGGTCATAAA-GACTTTAGGA 5'& |.|.. ||||| |||.||| &5' ATATTTCTATTTCCTGGAAT--- 3' HCK hsa-miR-3180-5p beg:138 end:160 pic:3' GCTGCACCCCGCCTCGCA-GACCTTC 5'& ||||| || .| |||||| &5' ----GTGGGTAGGT-TGGACTGGAA- 3' HCK hsa-miR-3188 beg:309 end:331 pic:3' GGGGCATAG--GCGTGTTTCGGAGA 5'& ||| .|| |||||.||.| &5' -----TATAAATGC-CAAAGTCTTT 3' HCK hsa-miR-3195 beg:5 end:23 pic:3' TTGGGCCCGGGCCGCGC 5'& .||| |||| ||| | &5' GACCAGGGCAGGGC-C- 3' HCK hsa-miR-3202 beg:68 end:90 pic:3' TAATTTCGAGAA-GAGGGAAGGT 5'& |..|| | | ||||||| &5' ---AGGGCCCACACCCCCTTCC- 3' HCK hsa-miR-324-5p beg:13 end:32 pic:3' TGTGGTTACGGGATCCCCTACGC 5'& ||. ||| |||||.||| &5' ----CAGGGCC--AGGGGGTGC- 3' HCK hsa-miR-328 beg:0 end:25 pic:3' TGCCTTCCC-GTCTC-TCCCGGTC 5'& ||.||| |||.| |||||||| &5' --GGGAGGACCAGGGCAGGGCCAG 3' HCK hsa-miR-339-5p beg:2 end:20 pic:3' GCACTCGAGGACCTCCTGTCCCT 5'& ||| || |||.||||| &5' ---GAGGACC---AGGGCAGGG- 3' HCK hsa-miR-383 beg:113 end:138 pic:3' TCGGTGTTAGTGGA--AGACTAGA 5'& |||||||.|. ||| |||| || &5' AGCCACAGTTTCCTCATCTG-TC- 3' HCK hsa-miR-4251 beg:193 end:204 pic:3' AACCGGGAAAAGAGTCC 5'& |||||||| &5' ---------TTCTCAGG 3' HCK hsa-miR-4258 beg:28 end:44 pic:3' GGTTCCGCCACCGCCCC 5'& || |||.|||||| &5' CCCAGGTGGTGGC---- 3' HCK hsa-miR-4265 beg:59 end:81 pic:3' GGGTCT-CGA-CTCGGGTGTC 5'& ||| || |.||||||| &5' -CCATCCGCCAGGGCCCACA- 3' HCK hsa-miR-4281 beg:78 end:97 pic:3' GGGGGGAGGGGCCCTGGG 5'& ||||||.||. ||| &5' -CCCCCTTCCTACT-CCC 3' HCK hsa-miR-4288 beg:88 end:102 pic:3' CCTTTGAGTCGTCTGTT 5'& |||| |||||| &5' ----ACTCC-CAGACA- 3' HCK hsa-miR-4292 beg:7 end:28 pic:3' GGTTCCGGCCGGGTCCCC 5'& |||.||| || ||||||| &5' CCAGGGCAGGGCCAGGGG 3' HCK hsa-miR-4296 beg:168 end:188 pic:3' ACTC-GGAC-TCGGGTGTA 5'& ||| |.|| | ||||| &5' TGACTCTTGCAATCCACA- 3' HCK hsa-miR-4302 beg:105 end:123 pic:3' GAGCGAC-TCGGTGTGACC 5'& |||||| ||||||| &5' CTCGCTTCAGCCACA---- 3' HCK hsa-miR-4308 beg:0 end:16 pic:3' TTCTTCTTTGAGGTCCCT 5'& |.|.||.| |||||| &5' AGGGAGGA---CCAGGG- 3' HCK hsa-miR-4311 beg:150 end:170 pic:3' GTGTGAGTCG---AGAGAAAG 5'& ||| .| |||||||. &5' ---ACT-GGAAAATCTCTTTT 3' HCK hsa-miR-431 beg:1 end:22 pic:3' ACGTACTGCC-GGA--CGTTCTGT 5'& | || || |||.|.| &5' -----GGAGGACCAGGGCAGGGC- 3' HCK hsa-miR-4312 beg:1 end:23 pic:3' ACC-CCT-GTCCTTGTTCCGG 5'& || ||| |||| .||.|||| &5' -GGAGGACCAGG-GCAGGGCC 3' HCK hsa-miR-4313 beg:10 end:30 pic:3' CCCAAACCCCGGTCCCCCGA 5'& ||| |||||||||||. &5' GGGCA--GGGCCAGGGGGT- 3' HCK hsa-miR-4314 beg:84 end:100 pic:3' GACAGGGTAAAGGGTCTC 5'& |||.| ||||||| &5' ---TCCTAC-TCCCAGA- 3' HCK hsa-miR-4322 beg:59 end:81 pic:3' GGGGTGCGCGA-CTCGGGTGTC 5'& |||. ||| |.||||||| &5' --CCATCCGCCAGGGCCCACA- 3' HCK hsa-miR-4324 beg:194 end:204 pic:3' AATTCCAATCCCAGAGTCCC 5'& ||||||| &5' ------------TCTCAGG- 3' HCK hsa-miR-455-3p beg:137 end:157 pic:3' CACATATACGGGT-ACCTGACG 5'& ||. |. ||||||| &5' --GTGG--GTAGGTTGGACTG- 3' HCK hsa-miR-508-3p beg:169 end:184 pic:3' AGATGAGGTTTTCCGATGTTAGT 5'& ||||. |.||||| &5' ---ACTCT-------TGCAATC- 3' HCK hsa-miR-551a beg:1 end:23 pic:3' ACCT-TTGGTTCTCACCCAGCG 5'& ||| .||||.|. ||| | &5' -GGAGGACCAGGGCAGGGCC-- 3' HCK hsa-miR-554 beg:138 end:158 pic:3' TGACCGACTCAGTCCTGATCG 5'& ||| | ||. |||||.| &5' --TGGGTAGGTT-GGACTGG- 3' HCK hsa-miR-567 beg:129 end:156 pic:3' CAAGACAGG--ACCT-TCTTGTATGA 5'& ||||||| |||. ||. ||| &5' --TCTGTCCAGTGGGTAGGTTGGACT 3' HCK hsa-miR-573 beg:101 end:118 pic:3' GACTAGTCAATGTGT-AGTGAAGTC 5'& ||| ||.|||||| &5' -----------CACCCTCGCTTCAG 3' HCK hsa-miR-608 beg:90 end:110 pic:3' TGCCTCGACAGGGT-TGT-GGTGGGGA 5'& ||||| ||| ||||||. &5' ---------TCCCAGACACCCACCCT- 3' HCK hsa-miR-609 beg:94 end:105 pic:3' TCTCTACTCTCTTTGTGGGA 5'& |.|||||| &5' -----------AGACACCC- 3' HCK hsa-miR-612 beg:16 end:36 pic:3' TTCCTCGAGTCTTCGGGACGGGTCG 5'& |.|| |||..| ||||||| &5' ---GGGC-CAGGGGG--TGCCCAG- 3' HCK hsa-miR-635 beg:15 end:38 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& ||.| | .|||||||.|| &5' GGGCCAGGG---GGTGCCCAGGT 3' HCK hsa-miR-644 beg:193 end:212 pic:3' CGAGATTCTTTCGGTGTGA 5'& .||| ||.||||| | | &5' -TTCTCAGGAAGCCCC-C- 3' HCK hsa-miR-648 beg:65 end:82 pic:3' TGGTCACGGGACGTGTGAA 5'& .|||| |||| |||| &5' GCCAGGGCCC---ACAC-- 3' HCK hsa-miR-660 beg:125 end:147 pic:3' GTTGAGGCTATACGTTACCCAT 5'& ||| |.| ||.|||||| &5' ---CTCATCTGTCCAGTGGGTA 3' HCK hsa-miR-886-3p beg:49 end:70 pic:3' TTCCCA-GTCATTCGTGGGCGC 5'& || ||| ||.|||| &5' --GGCTCCAGCAC-CATCCGC- 3' HCK hsa-miR-9 beg:306 end:326 pic:3' AGTATGTCGATCTAT-----TGGTTTCT 5'& ||||| .|||||| &5' ----------AGATATAAATGCCAAAG- 3' HCK hsa-miR-920 beg:108 end:130 pic:3' ATGACGAA---GGTGTCGAGGGG 5'& |||| ||||||.|.||. &5' ----GCTTCAGCCACAGTTTCCT 3' HCK hsv2-miR-H22 beg:99 end:120 pic:3' CGGGTGGGTGC-AGGTCTGGGGA 5'& ||||||| || |.||| || &5' -CCCACCCTCGCTTCAG-CC--- 3' HCK hsv2-miR-H6star beg:0 end:28 pic:3' TCCTACCT--TCCCGTCTTCTA-CCC 5'& .||| ||| |||||||.. ||| &5' GGGA-GGACCAGGGCAGGGCCAGGGG 3' HCK kshv-miR-K12-10astar beg:199 end:217 pic:3' TCACCACCATAGCGGGGTTCGG 5'& || | |||||||.. &5' ------GGAAGC-CCCCAAGTT 3' HCK kshv-miR-K12-11star beg:247 end:265 pic:3' GGATCTTTACAAATTCGACACTGG 5'& ||| ||||||||.. &5' ---------GTTACAGCTGTGATT 3' HCK sv40-miR-S1-3p beg:6 end:26 pic:3' TGAGTCCCGTACTTTGTCCG 5'& || ||||||| |. |||| &5' AC-CAGGGCA-GGGCCAGG- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region HCK High_conserved miR-503 chr20:30689222 7-mer-m8 60 3pUTR, CDS HCK High_conserved miR-7/7ab chr20:30659664 7-mer-m8 7 ncRNA HCK High_conserved miR-7/7ab chr20:30672244 8-mer 11 3pUTR, CDS HCK High_conserved miR-9/9ab chr20:30640145 7-mer-m8 11 5pUTR, ncRNA HCK High_conserved miR-96/507/1271 chr20:30676425 7-mer-A1 40 3pUTR, CDS HCK High_conserved miR-96/507/1271 chr20:30689646 7-mer-A1 20 3pUTR HCK High_conserved miR-135ab/135a-5p chr20:30686847 7-mer-m8 58 3pUTR, CDS HCK High_conserved miR-140/140-5p/876-3p/1244 chr20:30667677 7-mer-A1 9 3pUTR, CDS HCK High_conserved miR-140/140-5p/876-3p/1244 chr20:30671841 7-mer-A1 9 3pUTR, CDS HCK High_conserved miR-142-3p chr20:30671843 7-mer-A1 58 3pUTR, CDS HCK High_conserved miR-143/1721/4770 chr20:30659783 7-mer-m8 0 ncRNA HCK High_conserved miR-143/1721/4770 chr20:30659850 7-mer-A1 9 ncRNA HCK High_conserved miR-145 chr20:30689481 7-mer-A1 22 3pUTR HCK High_conserved miR-150/5127 chr20:30660264 7-mer-m8 11 ncRNA HCK High_conserved miR-150/5127 chr20:30672265 8-mer 67 3pUTR, CDS HCK High_conserved miR-150/5127 chr20:30672280 7-mer-A1 62 3pUTR, CDS HCK High_conserved miR-182 chr20:30676425 8-mer 42 3pUTR, CDS HCK High_conserved miR-182 chr20:30689646 7-mer-A1 20 3pUTR HCK High_conserved miR-18ab/4735-3p chr20:30671812 7-mer-m8 42 3pUTR, CDS HCK High_conserved miR-190/190ab chr20:30671797 7-mer-m8 13 3pUTR, CDS HCK High_conserved miR-193/193b/193a-3p chr20:30689306 7-mer-A1 78 3pUTR, CDS HCK High_conserved miR-204/204b/211 chr20:30659699 7-mer-m8 9 ncRNA HCK High_conserved miR-204/204b/211 chr20:30689596 7-mer-A1 9 3pUTR HCK High_conserved miR-214/761/3619-5p chr20:30686902 8-mer 60 3pUTR, CDS HCK High_conserved miR-218/218a chr20:30674449 7-mer-m8 67 3pUTR, CDS HCK High_conserved miR-122/122a/1352 chr20:30660334 7-mer-A1 7 ncRNA HCK High_conserved miR-26ab/1297/4465 chr20:30660287 7-mer-m8 0 ncRNA HCK High_conserved miR-103a/107/107ab chr20:30659632 7-mer-m8 11 ncRNA HCK High_conserved miR-338/338-3p chr20:30667645 7-mer-m8 27 3pUTR, CDS HCK High_conserved miR-338/338-3p chr20:30676383 7-mer-A1 67 3pUTR, CDS HCK High_conserved miR-338/338-3p chr20:30689224 7-mer-A1 80 3pUTR, CDS HCK High_conserved miR-338/338-3p chr20:30689276 7-mer-A1 62 3pUTR, CDS HCK High_conserved miR-425/425-5p/489 chr20:30659975 7-mer-A1 9 ncRNA HCK High_conserved miR-125a-5p/125b-5p/351/670/4319 chr20:30640011 7-mer-m8 13 5pUTR HCK High_conserved miR-125a-5p/125b-5p/351/670/4319 chr20:30640219 7-mer-m8 4 5pUTR, ncRNA HCK High_conserved miR-125a-5p/125b-5p/351/670/4319 chr20:30661162 7-mer-A1 4 3pUTR, CDS HCK High_conserved miR-451 chr20:30660146 7-mer-A1 9 ncRNA HCK High_conserved miR-129-5p/129ab-5p chr20:30659957 7-mer-m8 9 ncRNA HCK Medium_conserved miR-544/544ab/544-3p chr20:30681675 7-mer-m8 44 3pUTR, CDS HCK Medium_conserved miR-592/599 chr20:30660191 7-mer-A1 16 ncRNA HCK Medium_conserved miR-615-3p chr20:30681816 7-mer-m8 18 3pUTR, CDS HCK Medium_conserved miR-874 chr20:30689340 7-mer-m8 16 3pUTR HCK Medium_conserved miR-875-5p chr20:30660078 7-mer-m8 18 ncRNA HCK Medium_conserved miR-136 chr20:30686908 7-mer-A1 56 3pUTR, CDS HCK Medium_conserved miR-149 chr20:30689305 7-mer-m8 71 3pUTR, CDS HCK Medium_conserved miR-28-5p/708/1407/1653/3139 chr20:30686839 7-mer-m8 44 3pUTR, CDS HCK Medium_conserved miR-299/299-3p/3563-3p chr20:30659572 7-mer-m8 20 3pUTR, CDS, ncRNA HCK Medium_conserved miR-326/330/330-5p chr20:30689182 8-mer 9 3pUTR, CDS HCK Medium_conserved miR-326/330/330-5p chr20:30689194 7-mer-m8 18 3pUTR, CDS HCK Medium_conserved miR-328a/328b-3p chr20:30686813 7-mer-A1 51 3pUTR, CDS HCK Medium_conserved miR-328a/328b-3p chr20:30689346 7-mer-m8 24 3pUTR HCK Medium_conserved miR-329/329ab/362-3p chr20:30681759 8-mer 49 3pUTR, CDS HCK Medium_conserved miR-339b/339-5p/3586-5p chr20:30660352 7-mer-A1 7 ncRNA HCK Medium_conserved miR-342-3p chr20:30659840 7-mer-m8 4 ncRNA HCK Medium_conserved miR-370 chr20:30660028 8-mer 22 ncRNA HCK Medium_conserved miR-376abd/376b-3p chr20:30660117 7-mer-A1 9 ncRNA HCK Medium_conserved miR-377 chr20:30660184 7-mer-m8 13 ncRNA HCK Medium_conserved miR-433 chr20:30689213 7-mer-m8 62 3pUTR, CDS HCK Medium_conserved miR-127/127-3p chr20:30640258 7-mer-m8 42 CDS, 5pUTR, ncRNA HCK Medium_conserved miR-127/127-3p chr20:30689145 7-mer-A1 20 3pUTR, CDS HCK Medium_conserved miR-485-5p/1698/1703/1962 chr20:30659655 7-mer-m8 20 ncRNA HCK Medium_conserved miR-488 chr20:30689604 7-mer-A1 16 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score HCK RAID00358181 hsa-miR-6773-5p miRNA MIMAT0027446 HCK mRNA 3055 Prediction 0.1828 HCK RAID00455290 hsa-miR-4324 miRNA MIMAT0016876 HCK mRNA 3055 Prediction 0.1828 HCK RAID00811861 hsa-miR-873-5p miRNA MIMAT0004953 HCK mRNA 3055 Prediction 0.1828 HCK RAID01146358 hsa-miR-1271-5p miRNA MIMAT0005796 HCK mRNA 3055 Prediction 0.1828 HCK RAID01406558 hsa-miR-4318 miRNA MIMAT0016869 HCK mRNA 3055 Prediction 0.1828 HCK RAID01540367 hsa-miR-3654 miRNA MIMAT0018074 HCK mRNA 3055 Prediction 0.1828 HCK RAID02499158 hsa-miR-211-5p miRNA MIMAT0000268 HCK mRNA 3055 Prediction 0.1828 HCK RAID02695032 hsa-miR-181b-5p miRNA MIMAT0000257 HCK mRNA 3055 Prediction 0.1828 HCK RAID02873600 hsa-miR-96-5p miRNA MIMAT0000095 HCK mRNA 3055 Prediction 0.1828 HCK RAID02937249 hsa-miR-1200 miRNA MIMAT0005863 HCK mRNA 3055 Prediction 0.1828 HCK RAID02945530 hsa-miR-4251 miRNA MIMAT0016883 HCK mRNA 3055 Prediction 0.1828 HCK RAID03048177 hsa-miR-204-5p miRNA MIMAT0000265 HCK mRNA 3055 Prediction 0.1828 HCK RAID03083693 hsa-miR-1291 miRNA MIMAT0005881 HCK mRNA 3055 Prediction 0.1828 HCK RAID03436805 hsa-miR-6775-3p miRNA MIMAT0027451 HCK mRNA 3055 Prediction 0.1828 HCK RAID03502985 hsa-miR-6724-5p miRNA MIMAT0025856 HCK mRNA 3055 Prediction 0.1828 HCK RAID03718615 hsa-miR-182-5p miRNA MIMAT0000259 HCK mRNA 3055 Prediction 0.1828 HCK RAID03820495 hsa-miR-186-5p miRNA MIMAT0000456 HCK mRNA 3055 Prediction 0.1828 HCK RAID03990281 hsa-miR-9-5p miRNA MIMAT0000441 HCK mRNA 3055 Prediction 0.1828