DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome ABI3 3'UTR 1c4650848f BA000798 NM_001135186 chr17:44655077-44655586:+ ABI3 3'UTR 154b28942c BA000799 NM_001135186 chr17:44655077-44655586:+ ABI3 3'UTR 65eedf6074 BA000800 NM_001135186 chr17:44655077-44655374:+ ABI3 3'UTR 3e848ca26a BA000801 NM_001135186 chr17:44655077-44655374:+ ABI3 3'UTR bc53496278 BA000802 NM_001135186 chr17:44654595-44654841:+ ABI3 3'UTR 69918ebdf0 BA000803 NM_001135186 chr17:44654595-44654841:+ ABI3 3'UTR 1b3eb72878 NM_001135186 chr17:44655077-44655586:+ ABI3 5'UTR 1c4650848f CA001275 NM_001135186 chr17:44642588-44643085:+ ABI3 5'UTR 154b28942c CA001276 NM_001135186 chr17:44642588-44643085:+ ABI3 5'UTR 65eedf6074 CA001277 NM_001135186 chr17:44642772-44643085:+ ABI3 5'UTR 3e848ca26a CA001278 NM_001135186 chr17:44642588-44643085:+ ABI3 5'UTR bc53496278 CA001279 NM_001135186 chr17:44642772-44643085:+ ABI3 5'UTR 69918ebdf0 CA001280 NM_001135186 chr17:44642588-44643085:+ ABI3 5'UTR 595d43cf63 NM_001135186 chr17:44642588-44643085:+

DNA & RNA Element - AREsite Gene Name Motif CDS Area ARE Area Evidence ABI3; NESH ATTTA 499-1599 1768-1772

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0044410 chr17 47299913 47300587 + hsa_circ_0044406 chr17 47295100 47300587 + hsa_circ_0044408 chr17 47297530 47300587 + hsa_circ_0044407 chr17 47296901 47300587 + hsa_circ_0044405 chr17 47293892 47300587 + hsa_circ_0044409 chr17 47299452 47300587 +

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-ABI3-overlap.1 NM_001135186Tchr17:47288110-47295277 expressed ABI3 51225 protein-coding + not_available hsa-circ-ABI3.10 NM_016428Tchr17:47299913-47300587 none ABI3 51225 protein-coding + hsa_circ_0044410 hsa-circ-ABI3.12 NM_001135186Tchr17:47297530-47300587 expressed ABI3 51225 protein-coding + hsa_circ_0044408 hsa-circ-ABI3.13 NM_001135186Tchr17:47295100-47300587 expressed ABI3 51225 protein-coding + hsa_circ_0044406 hsa-circ-ABI3.14 NM_001135186Tchr17:47293892-47300587 expressed ABI3 51225 protein-coding + hsa_circ_0044405 hsa-circ-ABI3.3 NM_001135186Tchr17:47299452-47300587 none ABI3 51225 protein-coding + hsa_circ_0044409 hsa-circ-ABI3.5 NM_001135186Tchr17:47296901-47300587 none ABI3 51225 protein-coding + hsa_circ_0044407 hsa-circ-ABI3.6 NM_001135186Tchr17:47293892-47295277 expressed ABI3 51225 protein-coding + not_available hsa-circ-ABI3.7 NM_016428Tchr17:47293892-47300587 expressed ABI3 51225 protein-coding + hsa_circ_0044405 hsa-circ-ABI3.8 NM_016428Tchr17:47293892-47295277 expressed ABI3 51225 protein-coding + not_available

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT037451 hsa-miR-744-5p Homo sapiens ABI3 51225 Homo sapiens CLASH Functional MTI (Weak) 23622248

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004514 hsa-miR-29b-1* 51225 ABI3 agAUUUGGUGGUAUACUUUGGUCg |:|:|| | | ||||||| caUGAGCCCCAAGCCAAAACCAGc 2 23 47 70 [hg19:17:47300124-47300147:+] 0.5199 154 7 -22.43 -0.1058 MIMAT0004515 hsa-miR-29b-2* 51225 ABI3 gauucggugguACACUUUGGUc || ||||||| uggggaagagcUG-GAAACCAa 2 12 193 213 [hg19:17:47300270-47300290:+] 0.5690 141 7 -10.95 -0.5115 MIMAT0004550 hsa-miR-30c-2* 51225 ABI3 ucuCAUUUGUC-GGAA-GAGGGUc ||: | | |||| |||||| gcuGUGUUCUGUCCUUCCUCCCAu 2 20 115 138 [hg19:17:47300192-47300215:+] 0.5037 122 6 -18.03 -0.1011 MIMAT0004589 hsa-miR-30b* 51225 ABI3 cuucauuuGUAGG-UGGAGGGUc ::||| ||||||| cuguguucUGUCCUUCCUCCCAu 2 15 116 138 [hg19:17:47300193-47300215:+] 0.5037 145 7 -21.35 -0.2143 MIMAT0004608 hsa-miR-146a* 51225 ABI3 gacuucUUGACUUAAAGU-CUCc :| ||::||||| ||| ugcacuGAGUGGGUUUCAUGAGc 2 17 31 53 [hg19:17:47300108-47300130:+] 0.4663 124 0 -18.12 -0.1298 MIMAT0004611 hsa-miR-185* 51225 ABI3 cuggucuccUUUCGGUCGGGGa || ||||||| gcugcugcuAAUUACAGCCCCc 2 14 359 380 [hg19:17:47300436-47300457:+] 0.4432 141 7 -15.53 -0.5188 MIMAT0009199 hsa-miR-365* 51225 ABI3 ugucGACGGGGACUUUCAGGGa || |: ||| ||||||| ggguCUCCUGCUGCAAGUCCCa 2 19 253 274 [hg19:17:47300330-47300351:+] 0.5690 162 7 -20.72 -0.5456 MIMAT0001636 hsa-miR-452* 51225 ABI3 gugaaugaagaaacGUCUACUc ||||||| aacuuugaauaaaaCAGAUGAu 2 9 274 295 [hg19:17:47300351-47300372:+] 0.5690 140 7 -11.90 -0.9404 MIMAT0004762 hsa-miR-486-3p 51225 ABI3 uaggACAUGACUC-GACGGGGc ||| ||| | ||||||| augaUGUCCUGUGACUGCCCCa 2 18 291 312 [hg19:17:47300368-47300389:+] 0.5690 160 7 -25.93 -0.7702 MIMAT0002847 hsa-miR-518c* 51225 ABI3 guCUUUCACGAAGGGAGGUCUCu ||:|| | |:: ||||||| ggGAGAGAGAAUUUAUCCAGAGg 2 22 159 181 [hg19:17:47300236-47300258:+] 0.5073 161 7 -22.57 -0.2173 MIMAT0002877 hsa-miR-513a-5p 51225 ABI3 uaCUGUGGAGGGACACUu ||:: : :||||||| caGAUGAUGUCCUGUGAc 2 17 288 305 [hg19:17:47300365-47300382:+] 0.5690 148 7 -16.08 -0.4110 MIMAT0002888 hsa-miR-532-5p 51225 ABI3 ugccaggaugugagUUCCGUAc ||||||| ccaggagggauugaAAGGCAUc 2 9 326 347 [hg19:17:47300403-47300424:+] 0.4432 140 7 -13.24 -0.1240 MIMAT0004784 hsa-miR-455-3p 51225 ABI3 cacaUA-UACGGGUAC-CUGACg || |||:|| || ||||| acagAUGAUGUCC-UGUGACUGc 2 18 287 308 [hg19:17:47300364-47300385:+] 0.5690 122 0 -20.89 -0.2686 MIMAT0003256 hsa-miR-589* 51225 ABI3 agACCCUUGGC-CGUAAACAAGACu |||| :| || | ||||||| cuUGGGCUGUGAGC-UGUGUUCUGu 2 23 103 126 [hg19:17:47300180-47300203:+] 0.5617 151 7 -21.69 -0.3010 MIMAT0004804 hsa-miR-615-5p 51225 ABI3 cuAGGCUCGUGGCCCCUGGGGg |::| || | ||||||| agUUUGUCAACAGAGGACCCCu 2 21 216 237 [hg19:17:47300293-47300314:+] 0.5690 152 7 -21.96 -0.6894 MIMAT0004804 hsa-miR-615-5p 51225 ABI3 cuaGGCUCGUGGCCCCUGGGGg | | ||| ||||||| gugCAGCCCACAUUGGACCCCa 2 20 442 463 [hg19:17:47300519-47300540:+] 0.4882 147 7 -22.10 -0.8199 MIMAT0003284 hsa-miR-616* 51225 ABI3 uucaGUGACUU-CCCAAA--ACUCa ||||||: |||||| |||| ucugCACUGAGUGGGUUUCAUGAGc 2 19 29 53 [hg19:17:47300106-47300130:+] 0.4663 125 0 -23.93 -0.1298 MIMAT0003298 hsa-miR-629* 51225 ABI3 cgacccgaauGCAACCCUCUUg || ||||||| uuccucccauCGGAGGGAGAAg 2 13 129 150 [hg19:17:47300206-47300227:+] 0.5037 144 7 -15.21 -0.1301 MIMAT0003305 hsa-miR-635 51225 ABI3 ccuguaaCAAAGU-CAC-GGGUUCa |||||| | | |||||| ugaguggGUUUCAUGAGCCCCAAGc 2 17 36 60 [hg19:17:47300113-47300137:+] 0.4663 127 6 -16.88 -0.3697 MIMAT0003317 hsa-miR-647 51225 ABI3 cuuccuucacucACGUCGGUg |||||||| cagacaccccucUGCAGCCAu 2 10 462 482 [hg19:17:47300539-47300559:+] 0.5332 145 7 -14.16 -0.4176 MIMAT0003330 hsa-miR-654-5p 51225 ABI3 cgUGU--ACAAGAC---GCCGGGUGGu ||| || ||| | ||||||| ucACAGCUGGACUGGGUCUGCCCACCu 2 21 76 102 [hg19:17:47300153-47300179:+] 0.5408 146 7 -24.25 -0.3405 MIMAT0003888 hsa-miR-766 51225 ABI3 cgacuccGACACCCCGAC-CUCa || | |||||| ||| ugcccacCUCUUGGGCUGUGAGc 2 16 94 116 [hg19:17:47300171-47300193:+] 0.5617 123 0 -16.16 -0.1559 MIMAT0010364 hsa-miR-761 51225 ABI3 acaCAGUCAAAGUGGGACGACg | ||| || :||||||| cagGACAGGGUC-UCCUGCUGc 2 20 246 266 [hg19:17:47300323-47300343:+] 0.5690 153 7 -24.42 -0.5698 MIMAT0010364 hsa-miR-761 51225 ABI3 acacagucaaagugGGACGACg ||||||| aauuuauccagaggCCUGCUGc 2 9 168 189 [hg19:17:47300245-47300266:+] 0.5073 140 7 -19.11 -0.1557 MIMAT0004920 hsa-miR-541 51225 ABI3 ucaGGUCUAA--GACACGGGUGGu |::|| | | |||||||| cagCUGGACUGGGUCUGCCCACCu 2 20 79 102 [hg19:17:47300156-47300179:+] 0.5408 150 7 -22.40 -0.3461 MIMAT0004956 hsa-miR-374b* 51225 ABI3 uuacuAUUAUGUUGGACGAUUc ||| :| : ||||||| aguucUAAGGCUG-CUGCUAAu 2 18 350 370 [hg19:17:47300427-47300447:+] 0.4432 147 7 -8.38 -0.1717 MIMAT0005829 hsa-miR-1184 51225 ABI3 ccUUCGGUAG---UUCAG-CGACGUCc || ::||| |:| | ||||||| agAAUUUAUCCAGAGGCCUGCUGCAGa 2 22 166 192 [hg19:17:47300243-47300269:+] 0.5073 151 7 -20.81 -0.5714 MIMAT0005572 hsa-miR-1225-5p 51225 ABI3 ggGGGGUGACCCGG-CAUGGGUg :||||:| :| ||||||| cuUCCCAUUUCCUCAGUACCCAc 2 21 416 438 [hg19:17:47300493-47300515:+] 0.4432 155 7 -29.29 -0.3812 MIMAT0005591 hsa-miR-1236 51225 ABI3 gaccucucUGUUCCCCUUCUCc | | ||||||||| ccugcugcAGAUGGGGAAGAGc 2 15 182 203 [hg19:17:47300259-47300280:+] 0.5690 154 7 -23.70 -0.2338 MIMAT0005872 hsa-miR-1207-3p 51225 ABI3 cuuuacucccGGUCGACu ||||||| cuccaacccaCCAGCUGa 2 9 384 401 [hg19:17:47300461-47300478:+] 0.4432 140 7 -15.67 -0.4266 MIMAT0005893 hsa-miR-1305 51225 ABI3 agagagGGUAAUCUC-AACUUUu ||| ||:| |||||| aaggggCCAGGAGGGAUUGAAAg 2 17 320 342 [hg19:17:47300397-47300419:+] 0.5061 124 6 -16.88 -0.1615 MIMAT0005913 hsa-miR-1261 51225 ABI3 uucggUUUC-GGAAUAGGUa |:|| :||||||| gggagAGAGAAUUUAUCCAg 2 15 159 178 [hg19:17:47300236-47300255:+] 0.5073 145 7 -13.13 -0.2234 MIMAT0005921 hsa-miR-1267 51225 ABI3 accccuaaugugaAGUUGUCc ||||||| accaagaaguuugUCAACAGa 2 9 209 229 [hg19:17:47300286-47300306:+] 0.5690 140 7 -8.41 -0.5653 MIMAT0007348 hsa-miR-1470 51225 ABI3 gccccacgugcccGCCUCCCg ||||||| uccuuccucccauCGGAGGGa 2 9 126 146 [hg19:17:47300203-47300223:+] 0.5037 140 7 -16.83 -0.4724 MIMAT0007890 hsa-miR-1914* 51225 ABI3 ggaGGGUCACGCCCUGGGGAGg ||||| | ||||||| gacCCCAG-AC---ACCCCUCu 2 20 457 474 [hg19:17:47300534-47300551:+] 0.4882 141 7 -23.34 -0.1777 MIMAT0014980 hsa-miR-3118 51225 ABI3 ucuuaaaaguauuACGUCAGUGu | ||||||| agccaaaaccagcUCCAGUCACa 2 11 58 80 [hg19:17:47300135-47300157:+] 0.5199 142 7 -13.81 -0.1859 MIMAT0014984 hsa-miR-3122 51225 ABI3 uucuGGCAGGAGAACAGGGUUg || |: | ||||||| gucuCCUGCUGCAAGUCCCAAc 2 19 255 276 [hg19:17:47300332-47300353:+] 0.5690 146 7 -21.79 -0.6454 MIMAT0014998 hsa-miR-3133 51225 ABI3 uaacccaaaauucuCAAGAAAu ||||||| auugacugcaacuuGUUCUUUu 2 9 481 502 [hg19:17:47300558-47300579:+] 0.5019 140 7 -7.28 -0.2180 MIMAT0015024 hsa-miR-3151 51225 ABI3 uggACU--AGGGUA---ACGGGGUGg ||| |||::| |||||||| agaUGAUGUCCUGUGACUGCCCCACa 2 19 289 314 [hg19:17:47300366-47300391:+] 0.5690 152 7 -22.95 -0.6852 MIMAT0015040 hsa-miR-3166 51225 ABI3 auCCG-GUCAUCCGU--A--ACAGACGc ||| | |:|||| | ||||||| agGGCUCUCUGGGCAGCUGAUGUCUGCa 2 22 7 34 [hg19:17:47300084-47300111:+] 0.4127 150 7 -24.82 -0.2309 MIMAT0015084 hsa-miR-3199 51225 ABI3 uugaaAGAGGAUUCCG-UCAGGGa ||||||: || |||||| cagggUCUCCUGCUGCAAGUCCCa 2 19 251 274 [hg19:17:47300328-47300351:+] 0.5690 134 6 -25.21 -0.6341 MIMAT0016845 hsa-miR-4296 51225 ABI3 acucggAC-UCGGGUGUa || |||||||| acaaagUGCAGCCCACAu 2 12 437 454 [hg19:17:47300514-47300531:+] 0.4432 146 7 -17.00 -0.2500 MIMAT0016873 hsa-miR-4322 51225 ABI3 ggGGUGCGCGAC-UCGGGUGUc |||| || |||||||| acCCACAAAGUGCAGCCCACAu 2 20 433 454 [hg19:17:47300510-47300531:+] 0.4432 154 7 -27.23 -0.2500 MIMAT0016880 hsa-miR-4259 51225 ABI3 agGACUGGGGAUCUGGGUUGAc ||| |: | || ||||||| ucCUG-CUGCAAGUCCCAACUu 2 21 258 278 [hg19:17:47300335-47300355:+] 0.5690 158 7 -22.33 -0.9066 MIMAT0016881 hsa-miR-4260 51225 ABI3 acCCUGAGGUA--CGGGGUUc ||::|:||| ||||||| guGGGUUUCAUGAGCCCCAAg 2 18 39 59 [hg19:17:47300116-47300136:+] 0.4663 160 7 -28.18 -0.3791 MIMAT0016891 hsa-miR-4265 51225 ABI3 ggGUCUCGACUCGGGUGUc || ||: |||||||| caCAAAGUGCAGCCCACAu 2 18 436 454 [hg19:17:47300513-47300531:+] 0.4432 157 7 -18.60 -0.2478 MIMAT0016893 hsa-miR-4267 51225 ABI3 cacgguggCUCGACCu ||||||| auggggaaGAGCUGGa 2 9 192 207 [hg19:17:47300269-47300284:+] 0.5690 140 7 -16.23 -1.0236 MIMAT0016895 hsa-miR-2355 51225 ABI3 aacagguaacauaGACCCCUa ||||||| gggagaaggggucCUGGGGAg 2 9 143 163 [hg19:17:47300220-47300240:+] 0.4457 140 7 -14.71 -0.1646 MIMAT0016914 hsa-miR-4283 51225 ABI3 uuUGAGCGACUCGGGGu ::|: |||||||| ggGUUUCAUGAGCCCCa 2 16 41 57 [hg19:17:47300118-47300134:+] 0.4663 147 7 -20.11 -0.3402 MIMAT0000068 hsa-miR-15a 51225 ABI3 guGUUUGGUAAUAC-ACGACGAu | |::: | | | ||||||| ucCCAGUUCUAAGGCUGCUGCUa 2 21 346 368 [hg19:17:47300423-47300445:+] 0.4432 147 7 -14.87 -0.4003 MIMAT0000069 hsa-miR-16 51225 ABI3 gcGGUUAUAAAUGC-ACGACGAu |||:| | | | ||||||| ucCCAGUUCUAAGGCUGCUGCUa 2 21 346 368 [hg19:17:47300423-47300445:+] 0.4432 155 7 -18.88 -0.4003 MIMAT0000243 hsa-miR-148a 51225 ABI3 uguUUCAAGACAUCACGUGACu |: | ||| ||||||| ggcAGCUGAUGU-CUGCACUGa 2 20 18 38 [hg19:17:47300095-47300115:+] 0.4127 145 7 -16.66 -0.1219 MIMAT0000253 hsa-miR-10a 51225 ABI3 guguuuaagccuagaUGUCCCAu ||||||| ccuacuccaugcaggACAGGGUc 2 9 235 257 [hg19:17:47300312-47300334:+] 0.5690 140 7 -12.74 -0.1040 MIMAT0000254 hsa-miR-10b 51225 ABI3 guguuuaagccaagaUGUCCCAu ||||||| ccuacuccaugcaggACAGGGUc 2 9 235 257 [hg19:17:47300312-47300334:+] 0.5690 140 7 -12.74 -0.1040 MIMAT0000271 hsa-miR-214 51225 ABI3 ugacggacagacaCGGACGACa |||||||| aauuuauccagagGCCUGCUGc 2 10 168 189 [hg19:17:47300245-47300266:+] 0.5073 145 7 -16.64 -0.1587 MIMAT0000271 hsa-miR-214 51225 ABI3 ugACGGACAGACAC---GGACGACa ||| | | | | ||||||| caUGCAGGACAGGGUCUCCUGCUGc 2 21 242 266 [hg19:17:47300319-47300343:+] 0.5690 143 7 -18.22 -0.5662 MIMAT0000417 hsa-miR-15b 51225 ABI3 acauUUGGUACUAC-ACGACGAu |::: | | | ||||||| ucccAGUUCUAAGGCUGCUGCUa 2 19 346 368 [hg19:17:47300423-47300445:+] 0.4432 145 7 -15.12 -0.3972 MIMAT0000430 hsa-miR-138 51225 ABI3 gccggacuAAGUGUUGUGGUCGa | || ||||||| ccccaaccUCCAACCCACCAGCu 2 16 377 399 [hg19:17:47300454-47300476:+] 0.4432 143 7 -18.64 -0.1485 MIMAT0000431 hsa-miR-140-5p 51225 ABI3 gaUGGUAUCCCAUUUUGGU-GAc :|| | | ||||||| || gaGCCCCAAGCCAAAACCAGCUc 2 21 50 72 [hg19:17:47300127-47300149:+] 0.5199 120 0 -10.45 -0.3247 MIMAT0000438 hsa-miR-152 51225 ABI3 ggUUCAAGACAGUACGUGACu |: | |||| ||||||| gcAGCUGAUGUC-UGCACUGa 2 20 19 38 [hg19:17:47300096-47300115:+] 0.4127 153 7 -22.04 -0.1128 MIMAT0000447 hsa-miR-134 51225 ABI3 ggggagaccaguuGGUCAGUGu |||||||| gccaaaaccagcuCCAGUCACa 2 10 59 80 [hg19:17:47300136-47300157:+] 0.5199 145 7 -20.63 -0.1877 MIMAT0000461 hsa-miR-195 51225 ABI3 cgGUUAUAAAGAC-ACGACGAu ||:| | | ||||||| ccCAGUUCUAAGGCUGCUGCUa 2 20 347 368 [hg19:17:47300424-47300445:+] 0.4432 142 7 -18.58 -0.4003 MIMAT0000722 hsa-miR-370 51225 ABI3 ugguccaaGGUGGGGU-CGUCCg |:||:||| ||||| gaggacccCUACUCCAUGCAGGa 2 15 228 250 [hg19:17:47300305-47300327:+] 0.5690 126 0 -25.69 -0.1274 MIMAT0000724 hsa-miR-372 51225 ABI3 ugCGAGUUUA-CAGCGUCGU-GAAa ||| | | | |||||| ||| caGCUGACCUAGAAGCAGCAUCUUc 2 22 395 419 [hg19:17:47300472-47300496:+] 0.4432 120 0 -13.53 -0.2358 MIMAT0000726 hsa-miR-373 51225 ABI3 ugugGGGUUUUAGCUUCGU-GAAg ||:|:|| | |||| ||| cugaCCUAGAA--GCAGCAUCUUc 2 20 398 419 [hg19:17:47300475-47300496:+] 0.4432 120 0 -16.81 -0.2337 MIMAT0000759 hsa-miR-148b 51225 ABI3 uguUUCAAGACACUACGUGACu |: | ||| ||||||| ggcAGCUGAUGU-CUGCACUGa 2 20 18 38 [hg19:17:47300095-47300115:+] 0.4127 145 7 -18.34 -0.1219 MIMAT0001341 hsa-miR-424 51225 ABI3 aaguuuuguacuuaACGACGAc ||||||| cccaguucuaaggcUGCUGCUa 2 9 347 368 [hg19:17:47300424-47300445:+] 0.4432 140 7 -14.32 -0.4034 MIMAT0002820 hsa-miR-497 51225 ABI3 ugUUUGGUGUCACACGACGAc |: :| || ||||||| ccAGUUCUAAGGCUGCUGCUa 2 20 348 368 [hg19:17:47300425-47300445:+] 0.4432 147 7 -15.62 -0.4003 MIMAT0002843 hsa-miR-520b 51225 ABI3 gggaGAUUUUCCUUCGU-GAAa |||:|| | |||| ||| ugacCUAGAA-GCAGCAUCUUc 2 18 399 419 [hg19:17:47300476-47300496:+] 0.4432 123 0 -12.94 -0.2295 MIMAT0002846 hsa-miR-520c-3p 51225 ABI3 ugggaGAUUUUCCUUCGU-GAAa |||:|| | |||| ||| cugacCUAGAA-GCAGCAUCUUc 2 18 398 419 [hg19:17:47300475-47300496:+] 0.4432 123 0 -12.94 -0.2295 MIMAT0002856 hsa-miR-520d-3p 51225 ABI3 ugggUGGUUUCUCUUCGU-GAAa ||| |: || |||| ||| gcugACCUAGAAGCAGCAUCUUc 2 19 397 419 [hg19:17:47300474-47300496:+] 0.4432 126 0 -14.87 -0.2358 MIMAT0002875 hsa-miR-504 51225 ABI3 cuaucucACGUCUGGUCCCAGa |||||: ||||||| uacuccaUGCAGGACAGGGUCu 2 16 237 258 [hg19:17:47300314-47300335:+] 0.5690 163 7 -25.63 -0.2623

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G033968 ABI3 Homo sapiens 51225

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End ABI3; NESH 1 300 100 12.164 + chr17 47300077 47300377 ABI3; NESH 301 510 41.187 12.164 + chr17 47300377 47300587

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile ABI3 hsa-miR-4325 beg:433 end:448 pic:3' AGTGACTCTGTTCACGTT 5'& ||| |||||||. &5' -CACA-----AAGTGCAG 3' ABI3 hsa-miR-1233 beg:0 end:14 pic:3' GACGCCCTCCTGTCCCGAGT 5'& || |||||||| &5' -------AGCCCAGGGCTC- 3' ABI3 hsa-miR-138 beg:380 end:400 pic:3' GCCGGACTAAGTGTTGTGGTCGA 5'& ||| || |||||||| &5' ---CCTC---CAACCCACCAGCT 3' ABI3 hsa-miR-185star beg:370 end:380 pic:3' CTGGTCTCCTTTCGGTCGGGGA 5'& ||||||| &5' --------------CAGCCCC- 3' ABI3 hsa-miR-504 beg:241 end:259 pic:3' CTATCTCACGTCTGGTCCCAGA 5'& ||||| |||||||| &5' -------TGCAGGACAGGGTCT 3' ABI3 hsa-miR-3118 beg:64 end:81 pic:3' TCTTAAAAGTATTACGTCAGTGT 5'& || |||||||| &5' --------CAGCTC-CAGTCACA 3' ABI3 hsa-miR-1207-3p beg:391 end:402 pic:3' CTTTACTCCCGGTCGACT 5'& |||||||| &5' ----------CCAGCTGA 3' ABI3 hsa-miR-4292 beg:0 end:11 pic:3' GGTTCCGGCCGGGTCCCC 5'& |||||||| &5' ---------GCCCAGGG- 3' ABI3 hsa-miR-761 beg:173 end:190 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||| . |||||||| &5' -----CAGA---GGCCTGCTGC 3' ABI3 hsa-miR-761 beg:248 end:267 pic:3' ACACAGTCAAAGTGGGACGACG 5'& ||| || .|||||||| &5' -----CAGGGTC-TCCTGCTGC 3' ABI3 hsa-miR-214 beg:252 end:266 pic:3' TGACGGACAGACACGGACGACA 5'& |||| ||||||| &5' -------GTCT---CCTGCTG- 3' ABI3 hsa-miR-513a-5p beg:287 end:305 pic:3' TACTGTGGAGGGACACTT 5'& ||.. .||||||| &5' --GATGATGTCCTGTGA- 3' ABI3 ebv-miR-BART20-5p beg:174 end:189 pic:3' CCTTACTTCTGTACGGACGAT 5'& ||| |||||||. &5' -------AGAG--GCCTGCTG 3' ABI3 ebv-miR-BART21-3p beg:65 end:86 pic:3' TTTGTGGTCACCCGTGTTGATC 5'& |.| ||||| ||||.||.| &5' -AGCTCCAGT---CACAGCTGG 3' ABI3 ebv-miR-BART4star beg:16 end:42 pic:3' TGTGGACCACGGATGC-ACTACAC 5'& .|| ||| ||.||.| ||| ||| &5' GCAGCTGATGTCTGCACTGA-GTG 3' ABI3 ebv-miR-BART5star beg:139 end:157 pic:3' TCCACTTGTCGCCGGGTG 5'& ||| ||. || ||.|| &5' AGG-GAGAAGGGGTCC-- 3' ABI3 ebv-miR-BART6-5p beg:256 end:281 pic:3' GGAT-ACCTAACCTGGTTGGAAT 5'& |||. || | |||||.||. &5' CCTGCTGCAA-GTCCCAACTTTG 3' ABI3 hsa-miR-29b-2star beg:197 end:213 pic:3' GATTCGGTGGTACACTTTGGTC 5'& .|||. ||||||| &5' --GAGCTG------GAAACCA- 3' ABI3 hsa-miR-4283 beg:42 end:58 pic:3' TTTGAGCGACTCGGGGT 5'& .|| ||||||||| &5' ---TTCA-TGAGCCCCA 3' ABI3 hsa-miR-4267 beg:197 end:208 pic:3' CACGGTGGCTCGACCT 5'& |||||||| &5' --------GAGCTGGA 3' ABI3 hsa-miR-647 beg:471 end:483 pic:3' CTTCCTTCACTCACGTCGGTG 5'& ||||||||. &5' ------------TGCAGCCAT 3' ABI3 hsa-miR-4296 beg:439 end:455 pic:3' ACTCGGACTCGGGTGTA 5'& | || ||||||||| &5' -GTGC---AGCCCACAT 3' ABI3 hsa-miR-1184 beg:175 end:192 pic:3' CCTTCGGTAGTTCAGCGACGTCC 5'& ||.||| .||||||| &5' -GAGGCC-------TGCTGCAG- 3' ABI3 hsa-miR-615-5p beg:445 end:463 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& || ||| ||||||| &5' ---CC---CACATTGGACCCC- 3' ABI3 hcmv-miR-US33-3p beg:100 end:115 pic:3' ACCTACACGAGCCTGGCACT 5'& ||.||.|.|||| &5' --------CTTGGGCTGTGA 3' ABI3 hsa-miR-1205 beg:173 end:193 pic:3' GAGTTTCGTTTGG--GACGTCT 5'& ||.|| .|| ||||||| &5' --CAGAG---GCCTGCTGCAGA 3' ABI3 hsa-miR-1207-3p beg:14 end:27 pic:3' CTTTACTCCCGGTCGACT 5'& ||| ||||||| &5' -------GGG-CAGCTGA 3' ABI3 hsa-miR-1207-3p beg:187 end:207 pic:3' CTTTACTCCCGG-TCGACT 5'& |.||| ||| |||||. &5' -AGATG-GGGAAGAGCTGG 3' ABI3 hsa-miR-1228star beg:84 end:101 pic:3' GTGTGTGGACGGGGGCGGGTG 5'& ||| .|.|||||| &5' -------CTGGGTCTGCCCAC 3' ABI3 hsa-miR-1231 beg:449 end:469 pic:3' CGTCGACAGGCGGGTCTGTG 5'& || .|| | ||||||||| &5' -CA-TTGGAC-CCCAGACAC 3' ABI3 hsa-miR-1231 beg:16 end:36 pic:3' CGTCGACAGGCGGGTCTGTG 5'& ||||||| .|.|. .||| &5' GCAGCTGA-TGTCT--GCAC 3' ABI3 hsa-miR-1236 beg:180 end:203 pic:3' GACCTC-TCTGTTCCCCTTCTCC 5'& ||| | |||. ||||||||| &5' CTGCTGCAGAT--GGGGAAGAG- 3' ABI3 hsa-miR-1237 beg:319 end:332 pic:3' GACCCCCTGCCTC-GTCTTCCT 5'& ||.| |||.||| &5' ---------GGGGCCAGGAGG- 3' ABI3 hsa-miR-1238 beg:182 end:201 pic:3' CCCCGTCTGTCTGCTCCTTC 5'& || .||||.|.||||| &5' ---GCT-GCAGATGGGGAAG 3' ABI3 hsa-miR-1276 beg:483 end:502 pic:3' ACAGAGGTGTCCCGAGAAAT 5'& || || |.||||| &5' ---CTGCAACTTGTTCTTT- 3' ABI3 hsa-miR-1301 beg:249 end:269 pic:3' CTTCAGTGAGGGTCCGTCGACGTT 5'& |.| ||||. ||||||| &5' -AGGGT-CTCCT-----GCTGCAA 3' ABI3 hsa-miR-1302 beg:266 end:276 pic:3' AAATCGTATTCATACAGGGTT 5'& ||||||| &5' --------------GTCCCAA 3' ABI3 hsa-miR-1308 beg:467 end:490 pic:3' GGTGAC-TTGGTGGGT-ACG 5'& || ||| |.|||.. | ||| &5' CCTCTGCAGCCATTGACTGC 3' ABI3 hsa-miR-130bstar beg:184 end:203 pic:3' CATCACGTTGTCCCTTTCTCA 5'& ||||. |||.||||| &5' ----TGCAGATGGGGAAGAG- 3' ABI3 hsa-miR-1321 beg:115 end:134 pic:3' TAGTGTAAGT--GGAGGGAC 5'& . ||| |||.||| &5' ---GTGTTCTGTCCTTCCT- 3' ABI3 hsa-miR-132 beg:104 end:127 pic:3' GCTGGTAC-CGACATCTGACAAT 5'& |.|..|| |||||. |||| &5' -GGCTGTGAGCTGTGTTCTGT-- 3' ABI3 hsa-miR-134 beg:465 end:487 pic:3' GGGGAGACCAGTTGGTCAGTGT 5'& |||||||| ||.||| | || &5' CCCCTCTG--CAGCCATTGAC- 3' ABI3 hsa-miR-148a beg:20 end:39 pic:3' TGTTTCAAGAC-ATC-ACGTGACT 5'& ||| |. |||||||| &5' --------CTGATGTCTGCACTGA 3' ABI3 hsa-miR-148b beg:20 end:39 pic:3' TGTTTCAAGAC-ACT-ACGTGACT 5'& ||| || |||||||| &5' --------CTGATGTCTGCACTGA 3' ABI3 hsa-miR-152 beg:17 end:39 pic:3' GGTTCAAGACAGTACGTGACT 5'& ||. | |||| |||||||| &5' -CAGCTGATGTC-TGCACTGA 3' ABI3 hsa-miR-15b beg:348 end:369 pic:3' ACATTTGGTACTACACGACGAT 5'& || |.| |. |||||||| &5' -GTT--CTAAGGC-TGCTGCTA 3' ABI3 hsa-miR-16 beg:346 end:369 pic:3' GCGGTTATAAA--TGCACGACGAT 5'& |||.| .| |||||||| &5' --CCAGTTCTAAGGC-TGCTGCTA 3' ABI3 hsa-miR-17star beg:175 end:192 pic:3' GATGTTCACGGAAGTGACGTCA 5'& .|| |||| .|||||| &5' ----GAG-GCCT--GCTGCAG- 3' ABI3 hsa-miR-1825 beg:141 end:161 pic:3' CCTCTCCTCCCGTGACCT 5'& ||||| .||| ||||. &5' GGAGAA-GGGGTCCTGGG 3' ABI3 hsa-miR-1910 beg:318 end:339 pic:3' TCCGCC-GTCCGTGTCCTGACC 5'& ||| || |||| .|||.|| &5' AGG-GGCCAGGA--GGGATTG- 3' ABI3 hsa-miR-1915 beg:147 end:162 pic:3' GGGCGGCGCAGCGGGACCCC 5'& | |.||||||| &5' --------GGGGTCCTGGGG 3' ABI3 hsa-miR-195 beg:346 end:369 pic:3' CGGTTATAAAGAC-ACGACGAT 5'& |||.| | |||||||| &5' -CCAGTTCTAAGGCTGCTGCTA 3' ABI3 hsa-miR-202 beg:415 end:437 pic:3' AAGGGTACGGGA--TATGGAGA 5'& |||||| .||| .|||| | &5' -TCCCATTTCCTCAGTACC-C- 3' ABI3 hsa-miR-20bstar beg:355 end:376 pic:3' GACCTTC-ACGGGTATGATGTCA 5'& || | |||. |.||||| &5' --GGCTGCTGCTA--ATTACAG- 3' ABI3 hsa-miR-2117 beg:150 end:171 pic:3' GACAGGAACCGTTTCTCTTGT 5'& ||||| || |.||||||. &5' --GTCCTGGGGAGAGAGAAT- 3' ABI3 hsa-miR-220c beg:284 end:304 pic:3' TCAGAAGTGTTGT---CGGGACACA 5'& |||. |.|||||| &5' -------ACAGATGATGTCCTGTG- 3' ABI3 hsa-miR-22 beg:3 end:25 pic:3' TGTCAAGA-AGTTGACCGTCGAA 5'& ||| || || ||||||| &5' -CAGGGCTCTCTG--GGCAGCT- 3' ABI3 hsa-miR-2355 beg:150 end:163 pic:3' AACAGGTAACATAGACCCCTA 5'& |||| |||||| &5' --GTCC--------TGGGGA- 3' ABI3 hsa-miR-2355 beg:180 end:199 pic:3' AACAGGTAACATAGACCCCTA 5'& |. || | |||||| &5' ----CTGCTGCAGATGGGGA- 3' ABI3 hsa-miR-24-2star beg:24 end:45 pic:3' GACACAAA-GTCGAGTCATCCGT 5'& ||| || || |||.||. &5' ---TGTCTGCA-CTGAGTGGGT- 3' ABI3 hsa-miR-26bstar beg:232 end:255 pic:3' CTCGGTTCAT-TACCTCTTGTCC 5'& || ||| ||.||||| &5' ---CCTACTCCATGCAGGACAGG 3' ABI3 hsa-miR-27a beg:100 end:116 pic:3' CGCCTTGAATCGGTGACACTT 5'& |||.| .||||||. &5' ------CTTGG--GCTGTGAG 3' ABI3 hsa-miR-27a beg:287 end:305 pic:3' CGCCTTGAATCGGTGACACTT 5'& .|. |.| |||||| &5' ----GATGATGTC-CTGTGA- 3' ABI3 hsa-miR-27b beg:285 end:305 pic:3' CGTCTTGAATCGGTGACACTT 5'& |||| |.| |||||| &5' -CAGATGAT-GTC-CTGTGA- 3' ABI3 hsa-miR-2861 beg:90 end:111 pic:3' GGCGGGTGGC-GGTCCGGGG 5'& |.||||||| . |||. &5' CTGCCCACCTCTTGGGCT-- 3' ABI3 hsa-miR-296-5p beg:137 end:158 pic:3' TGTCCTAACTCCCCCCCGGGA 5'& ||| ||| ||||.||| &5' ---GGAGGGAGAAGGGGTCCT 3' ABI3 hsa-miR-29b-1star beg:48 end:71 pic:3' AGATTTGGTGGTATAC-TTTGGTCG 5'& |.|.|| ||| |||||||| &5' --TGAGCC-CCAAGCCAAAACCAGC 3' ABI3 hsa-miR-30astar beg:331 end:343 pic:3' CGACGTTTGTAGGCTGACTTTC 5'& ||.|||||| &5' -------------GATTGAAAG 3' ABI3 hsa-miR-30dstar beg:324 end:343 pic:3' CGTCGTTTGTAGACTGACTTTC 5'& || |. | ||.|||||| &5' ---GCCAGGAGG-GATTGAAAG 3' ABI3 hsa-miR-30estar beg:331 end:343 pic:3' CGACATTTGTAGGCTGACTTTC 5'& ||.|||||| &5' -------------GATTGAAAG 3' ABI3 hsa-miR-3117 beg:339 end:357 pic:3' GACCGTGATATACTCAGGATA 5'& ||||. |||.||| &5' --GGCATCCC---AGTTCTA- 3' ABI3 hsa-miR-3126-5p beg:110 end:132 pic:3' ACGAA-GAC-CGTAGACAGGGAGT 5'& |. ||| |. |||||||.|| &5' -GTGAGCTGTGT-TCTGTCCTTC- 3' ABI3 hsa-miR-3129 beg:345 end:367 pic:3' TTTGGTTAGAGATG-TGATGACG 5'& |||.| |||| .||.|||| &5' ---CCAGT-TCTAAGGCTGCTGC 3' ABI3 hsa-miR-31 beg:484 end:506 pic:3' TCGATACGGT---CGT-AGAACGGA 5'& ||| |. |.||||| &5' -----TGCAACTTGTTCTTTTGCC- 3' ABI3 hsa-miR-3140 beg:164 end:183 pic:3' TGATGGACTTAAG--GGTTTTCGA 5'& |||||. |||.|.|| &5' -------GAATTTATCCAGAGGC- 3' ABI3 hsa-miR-3151 beg:293 end:314 pic:3' TGGACTAGGGTA---ACGGGGTGG 5'& .|||..| |||||||| &5' -----GTCCTGTGACTGCCCCAC- 3' ABI3 hsa-miR-3166 beg:13 end:34 pic:3' ATCCGGTCATCCGTA----ACAGACGC 5'& |.|||| ||||||| &5' --------TGGGCAGCTGATGTCTGC- 3' ABI3 hsa-miR-3169 beg:334 end:357 pic:3' GATACACGGTTCGT---GTCAGGAT 5'& || |.||| ||||.||| &5' -----TGAAAGGCATCCCAGTTCTA 3' ABI3 hsa-miR-3189 beg:302 end:325 pic:3' GATGGGGTAGTCTGGGTTCCC 5'& ||.||||| |||| .||||| &5' CTGCCCCA-CAGAGATAAGGG 3' ABI3 hsa-miR-3189 beg:0 end:11 pic:3' GATGGGGTAGTCTGGGTTCCC 5'& ||| ||||.|| &5' ---------CAG-CCCAGGG- 3' ABI3 hsa-miR-3193 beg:232 end:251 pic:3' TGAGGAGTCTAGGATGCGTCCT 5'& ||| ||| |.|||||| &5' ---CCTAC--TCC-ATGCAGGA 3' ABI3 hsa-miR-3196 beg:175 end:195 pic:3' CTCCGGGGACGGCGGG-GC 5'& |||||| |||.|| .| &5' GAGGCC--TGCTGCAGATG 3' ABI3 hsa-miR-3202 beg:117 end:133 pic:3' TAATTTCGAGAAGAGGGAAGGT 5'& |.||| .|||||| &5' ------GTTCTG--TCCTTCC- 3' ABI3 hsa-miR-326 beg:162 end:182 pic:3' GACCTC-CTTCCC-GGGTCTCC 5'& ||| ||| .||||||| &5' ---GAGAGAATTTATCCAGAGG 3' ABI3 hsa-miR-326 beg:0 end:11 pic:3' GACCTCCTTCCCGGGTCTCC 5'& ||||||.| &5' -----------GCCCAGGG- 3' ABI3 hsa-miR-339-5p beg:236 end:256 pic:3' GCACTCGAGG-ACCTCCTGTCCCT 5'& |||| || ||||||||| &5' ------CTCCATGCAGGACAGGG- 3' ABI3 hsa-miR-365star beg:247 end:274 pic:3' TGTCGACGG-GGACT---TTCAGGGA 5'& |||| |.| |||| ||||||| &5' ACAGG-GTCTCCTGCTGCAAGTCCC- 3' ABI3 hsa-miR-379 beg:87 end:98 pic:3' GGATGCAAGGTATCAGATGGT 5'& .||||.|| &5' ------------GGTCTGCC- 3' ABI3 hsa-miR-4257 beg:84 end:108 pic:3' GAGTCAG--GGGTGGAG-ACC 5'& || .||| |||||||| ||| &5' CTGGGTCTGCCCACCTCTTGG 3' ABI3 hsa-miR-4259 beg:255 end:278 pic:3' AGGACTGGGGATCTGGGTTGAC 5'& ||||| |. | || ||||||| &5' TCCTG-CTGCAAGTCCCAACT- 3' ABI3 hsa-miR-4260 beg:38 end:60 pic:3' ACCCTGAGGTA--CGGGGTTC 5'& |||| .|.||| |||||||| &5' TGGG-TTTCATGAGCCCCAAG 3' ABI3 hsa-miR-4265 beg:431 end:454 pic:3' GGGTC--TCGACTCGGGTGTC 5'& |||| ||. |||||||| &5' CCCACAAAGTGCAGCCCACA- 3' ABI3 hsa-miR-4267 beg:72 end:87 pic:3' CACGGTGGCTCGACCT 5'& |.||| ||||||| &5' --GTCAC--AGCTGGA 3' ABI3 hsa-miR-4274 beg:346 end:366 pic:3' GTCCCCCTCCCTGACGAC 5'& ||| |.|||||| &5' CAGTTCTAA-GGCTGCTG 3' ABI3 hsa-miR-4274 beg:319 end:339 pic:3' GTCCC---CCTCCCTGACGAC 5'& .||| |||||||.|| &5' -GGGGCCAGGAGGGATTG--- 3' ABI3 hsa-miR-4279 beg:319 end:336 pic:3' CTTCGGCCCTCCTCTC 5'& |..||| ||||| || &5' GGGGCCAGGAGG-GA- 3' ABI3 hsa-miR-4280 beg:19 end:37 pic:3' CGAGACGAGTCTTGATGTGAG 5'& ||| | ||.|||| &5' -----GCTGATGTCTGCACT- 3' ABI3 hsa-miR-4283 beg:254 end:275 pic:3' TTTGAG--CGAC--TCGGGGT 5'& ||| |||| ||.|||| &5' ---CTCCTGCTGCAAGTCCCA 3' ABI3 hsa-miR-4287 beg:144 end:165 pic:3' TTTCA-CGGGAGTTCCCTCT 5'& .||| |.||| .|||||| &5' GAAGGGGTCCT--GGGGAGA 3' ABI3 hsa-miR-4291 beg:111 end:127 pic:3' TCGACA-AGGACGACTT 5'& |||||| |.|||. &5' AGCTGTGTTCTGT---- 3' ABI3 hsa-miR-4298 beg:255 end:275 pic:3' GACGGAGGAGGAGGA-CAGGGTC 5'& .||||| || | |||||| &5' ---TCTCCTGCTGCAAGTCCCA- 3' ABI3 hsa-miR-4304 beg:292 end:310 pic:3' ACGGGAC-CTGTACGGCC 5'& ||.|||| ||| |||| &5' TGTCCTGTGAC-TGCC-- 3' ABI3 hsa-miR-4305 beg:77 end:95 pic:3' CTTGACCT--CCACAGATCC 5'& |.||||| || ||||. &5' -AGCTGGACTGG-GTCTG-- 3' ABI3 hsa-miR-4312 beg:242 end:258 pic:3' ACCCCTGTCCTTGTTCCGG 5'& .|||| |||.||.| &5' -----GCAGG-ACAGGGTC 3' ABI3 hsa-miR-4322 beg:431 end:454 pic:3' GGGGTG---CGCGACTCGGGTGTC 5'& ||||| |.|| |||||||| &5' -CCCACAAAGTGC--AGCCCACA- 3' ABI3 hsa-miR-4323 beg:99 end:119 pic:3' AGACTCCGACACCCCGAC 5'& ||| .||||||| |||| &5' TCTTGGGCTGTGA-GCTG 3' ABI3 hsa-miR-450b-5p beg:173 end:193 pic:3' ATAAGTCCTTGTATAACGTTTT 5'& ||| .| |. ||||.| &5' ----CAGAGGCCTGCTGCAGA- 3' ABI3 hsa-miR-452star beg:180 end:197 pic:3' GTGAATGAAGAA-ACGTCTACTC 5'& || ||||||||.| &5' ---------CTGCTGCAGATGGG 3' ABI3 hsa-miR-452star beg:273 end:295 pic:3' GTGAATGAAGAAAC-------GTCTACTC 5'& ||||| ||||||| &5' ---------CTTTGAATAAAACAGATGA- 3' ABI3 hsa-miR-454star beg:188 end:198 pic:3' CGTCTCTGTTATAACTATCCCA 5'& |||.||| &5' --------------GATGGGG- 3' ABI3 hsa-miR-455-3p beg:91 end:113 pic:3' CACATATACGGGT-----ACCTGACG 5'& |||||| |||.|||. &5' -------TGCCCACCTCTTGGGCTGT 3' ABI3 hsa-miR-502-5p beg:393 end:413 pic:3' ATCG--TGGGTCTATCGTTCCTA 5'& ||| |||.||| ||||. &5' -AGCTGACCTAGA-AGCAG---- 3' ABI3 hsa-miR-507 beg:172 end:193 pic:3' AAGTGAGGTTTTCC----ACGTTTT 5'& ||||.|.| ||||.| &5' -----TCCAGAGGCCTGCTGCAGA- 3' ABI3 hsa-miR-518cstar beg:159 end:182 pic:3' GTCTTTCACGAAGGGAGGTCTCT 5'& .||.|| | |. |||||||. &5' -GGAGAGAGAATTTATCCAGAGG 3' ABI3 hsa-miR-541 beg:84 end:102 pic:3' TCAGGTCTAAGACACGGGTGGT 5'& | |. || |||||||| &5' ---CTGGG-TC--TGCCCACC- 3' ABI3 hsa-miR-541 beg:382 end:397 pic:3' TCAGGTCTAAGACACGGGTGGT 5'& |||| ||||||| &5' --TCCAA--------CCCACCA 3' ABI3 hsa-miR-551a beg:202 end:224 pic:3' ACCTTTGGTTC-TCACCCAGCG 5'& |||||||||| ||| ||| &5' -GGAAACCAAGAAGTTTGTC-- 3' ABI3 hsa-miR-564 beg:256 end:274 pic:3' CGGACGACTGTGGCACGGA 5'& ||||||| || || || &5' -CCTGCTG-CAA-GTCCC- 3' ABI3 hsa-miR-589star beg:106 end:126 pic:3' AGACCCTTGGCCGTAAACAAGACT 5'& ||| ||.|.| ||||||| &5' -CTGTGAGCTG-----TGTTCTG- 3' ABI3 hsa-miR-600 beg:98 end:116 pic:3' CTCGTTCCGAGAACA-GACATTCA 5'& |||||| ||||.|| &5' --------CTCTTGGGCTGTGAG- 3' ABI3 hsa-miR-604 beg:431 end:450 pic:3' CAGGACTTAAGGCGTCGGA 5'& || .|||||| &5' --CCCACAAAGTGCAGCC- 3' ABI3 hsa-miR-604 beg:465 end:481 pic:3' CAGGACTTAAGGCGTCGGA 5'& || ||.|||||| &5' --CCCC---TCTGCAGCC- 3' ABI3 hsa-miR-608 beg:84 end:105 pic:3' TGCCTCGACAGGGTTGTGGTGGGGA 5'& || ||| .| .| |||||.|| &5' ---GA-CTGGGTCTGC-CCACCTCT 3' ABI3 hsa-miR-609 beg:454 end:471 pic:3' TCTCTACTCTC-TTTGTGGGA 5'& || |.|||||| &5' ------GACCCCAGACACCC- 3' ABI3 hsa-miR-609 beg:155 end:177 pic:3' TCTCTACTCTCTTT-GTGGGA 5'& .|.|| ||||||| .|.|| &5' GGGGA-GAGAGAATTTATCC- 3' ABI3 hsa-miR-615-5p beg:214 end:238 pic:3' CTAGGCTCGTGGCCCCTGGGGG 5'& .|..| || | |||||||. &5' -GTTTGTCAACAGAGGACCCCT 3' ABI3 hsa-miR-635 beg:0 end:10 pic:3' CCTGTAACAAAGTCACGGGTTCA 5'& |||||.| &5' ---------------GCCCAGG- 3' ABI3 hsa-miR-642 beg:313 end:337 pic:3' GTTCTGTGTAAACC---TCTCCCTG 5'& .|||.| || .||||||. &5' -GAGATAAGG--GGCCAGGAGGGAT 3' ABI3 hsa-miR-646 beg:7 end:26 pic:3' CG-GAGTCTCCGTCGACGAA 5'& || ||| .|||||||| &5' GCTCTCT-GGGCAGCTG--- 3' ABI3 hsa-miR-654-5p beg:80 end:102 pic:3' CGTGTACAAGACGC---CGGGTGGT 5'& .| || ||| | ||||||| &5' --GC-TGGACTGGGTCTGCCCACC- 3' ABI3 hsa-miR-658 beg:458 end:477 pic:3' TGGTTGCCTGGATGAAGGGAGGCGG 5'& ||| ||| |||||.|| &5' -CCA---GACAC----CCCTCTGC- 3' ABI3 hsa-miR-659 beg:37 end:64 pic:3' ACCCCTGGGA---GGGACTTGGTTC 5'& |||| .| ||| |.|||| &5' TGGGTTTCATGAGCCCCAAGCCAA- 3' ABI3 hsa-miR-660 beg:26 end:45 pic:3' GTTGAGGCTATACGTTACCCAT 5'& ||.| || |.||||| &5' ----TCTGCACTG-AGTGGGT- 3' ABI3 hsa-miR-711 beg:72 end:95 pic:3' GAATGCAGA---GAGG-GACCCAGGG 5'& ||| || |||||||. &5' -----GTCACAGCTGGACTGGGTCT- 3' ABI3 hsa-miR-760 beg:0 end:13 pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||| |||||.||. &5' ------CAG-CCCAGGGCT- 3' ABI3 hsa-miR-769-5p beg:26 end:49 pic:3' TCGAGTCTTGGGTC-TCCAGAGT 5'& || | ||. || .|||.||| &5' ---TCTGCACTGAGTGGGTTTCA 3' ABI3 hsa-miR-877 beg:468 end:490 pic:3' GGGACG-CGGTAGAGGAGATG 5'& |.|||| |||||. ||.| &5' CTCTGCAGCCATTGA--CTGC 3' ABI3 hsa-miR-877star beg:137 end:154 pic:3' GACCCTCCTCCCTCTTCTCCT 5'& |||||||||||.|| &5' ------GGAGGGAGAAGGGG- 3' ABI3 hsa-miR-877star beg:320 end:344 pic:3' GACCC--TCCTCCCT--CTTCTCCT 5'& ||| |||||||| ||| ||| &5' --GGGCCAGGAGGGATTGAA-AGG- 3' ABI3 hsa-miR-920 beg:358 end:381 pic:3' ATGACGAA-GGTGTCGAGGGG 5'& |.||||| ..||||| |||| &5' TGCTGCTAATTACAGC-CCCC 3' ABI3 hsv1-miR-H11 beg:340 end:358 pic:3' CGCAAGCGTGAAA-CAGGATT 5'& |||. ||.|||| &5' ------GCATCCCAGTTCTAA 3' ABI3 hsv1-miR-H12 beg:259 end:276 pic:3' TTCGCAAGCGTGAAGCAGGGTT 5'& || .||| ||||||| &5' --GC---TGCAA---GTCCCAA 3' ABI3 hsv1-miR-H3 beg:252 end:275 pic:3' CAG-GGTTGGCGTGTCAGGGTC 5'& ||| || .|.||| ||||||| &5' GTCTCCTGCTGCA-AGTCCCA- 3' ABI3 hsv1-miR-H6-3p beg:319 end:343 pic:3' CCCTA--CCTTCCTGCCCTTCAC 5'& |||. |||.|||. | ||| &5' GGGGCCAGGAGGGATTGAAAG-- 3' ABI3 hsv2-miR-H10 beg:372 end:393 pic:3' GGCGGG---TGGGGGCGTGGG 5'& |||| |||.|| |||| &5' --GCCCCCAACCTCCA-ACCC 3' ABI3 hsv2-miR-H11 beg:340 end:358 pic:3' TTCGCAAGCGTGAAA-CAGGATT 5'& |||. ||.|||| &5' --------GCATCCCAGTTCTAA 3' ABI3 hsv2-miR-H12 beg:340 end:358 pic:3' TTCGCAAGCGTGAAG-CAGGATT 5'& |||. ||.|||| &5' --------GCATCCCAGTTCTAA 3' ABI3 kshv-miR-K12-10astar beg:39 end:62 pic:3' TCACCACCATAG----CGGGGTTCGG 5'& ||| || |||||||||| &5' ------GGTTTCATGAGCCCCAAGCC 3' ABI3 kshv-miR-K12-1 beg:285 end:305 pic:3' CGAATGTGGGTCAA----AGGACATTA 5'& ||| ||||||.| &5' ---------CAGATGATGTCCTGTGA- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region ABI3 High_conserved miR-503 chr17:47300445 7-mer-A1 13 3pUTR ABI3 High_conserved miR-137/137ab chr17:47287997 8-mer 4 5pUTR ABI3 High_conserved miR-138/138ab chr17:47297630 8-mer 16 CDS ABI3 High_conserved miR-138/138ab chr17:47299940 7-mer-m8 4 CDS ABI3 High_conserved miR-138/138ab chr17:47300476 7-mer-m8 13 3pUTR ABI3 High_conserved miR-148ab-3p/152 chr17:47300115 8-mer 16 3pUTR ABI3 High_conserved miR-15abc/16/16abc/195/322/424/497/1907 chr17:47300445 8-mer 13 3pUTR ABI3 High_conserved miR-18ab/4735-3p chr17:47295151 8-mer 38 CDS ABI3 High_conserved miR-199ab-5p chr17:47299477 7-mer-A1 9 CDS ABI3 High_conserved miR-214/761/3619-5p chr17:47288168 7-mer-m8 33 CDS ABI3 High_conserved miR-214/761/3619-5p chr17:47300077 7-mer-A1 44 CDS ABI3 High_conserved miR-214/761/3619-5p chr17:47300266 7-mer-m8 16 3pUTR ABI3 High_conserved miR-214/761/3619-5p chr17:47300343 7-mer-m8 7 3pUTR ABI3 High_conserved miR-22/22-3p chr17:47300102 7-mer-m8 11 3pUTR ABI3 High_conserved miR-103a/107/107ab chr17:47300267 7-mer-A1 24 3pUTR ABI3 High_conserved miR-103a/107/107ab chr17:47300344 7-mer-A1 9 3pUTR ABI3 High_conserved miR-10abc/10a-5p chr17:47300334 7-mer-m8 9 3pUTR ABI3 Medium_conserved miR-504/4725-5p chr17:47300335 7-mer-m8 13 3pUTR ABI3 Medium_conserved miR-615-3p chr17:47287905 7-mer-m8 9 5pUTR ABI3 Medium_conserved miR-134/3118 chr17:47300157 8-mer 11 3pUTR ABI3 Medium_conserved miR-876-5p/3167 chr17:47287696 7-mer-A1 38 5pUTR ABI3 Medium_conserved miR-136 chr17:47295122 7-mer-A1 51 CDS ABI3 Medium_conserved miR-136 chr17:47299507 7-mer-A1 11 CDS ABI3 Medium_conserved miR-149 chr17:47288071 8-mer 24 5pUTR ABI3 Medium_conserved miR-149 chr17:47297246 7-mer-m8 18 CDS ABI3 Medium_conserved miR-149 chr17:47299943 7-mer-A1 4 CDS ABI3 Medium_conserved miR-185/882/3473/4306/4644 chr17:47287775 7-mer-A1 44 5pUTR ABI3 Medium_conserved miR-197 chr17:47295108 7-mer-A1 51 CDS ABI3 Medium_conserved miR-197 chr17:47299920 7-mer-m8 56 CDS ABI3 Medium_conserved miR-28-5p/708/1407/1653/3139 chr17:47297608 7-mer-m8 7 CDS ABI3 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr17:47288120 8-mer 36 CDS ABI3 Medium_conserved miR-299/299-3p/3563-3p chr17:47300532 7-mer-m8 11 3pUTR ABI3 Medium_conserved miR-326/330/330-5p chr17:47295200 8-mer 13 CDS ABI3 Medium_conserved miR-339b/339-5p/3586-5p chr17:47300333 7-mer-m8 9 3pUTR ABI3 Medium_conserved miR-346 chr17:47297276 7-mer-m8 16 CDS ABI3 Medium_conserved miR-370 chr17:47287913 7-mer-A1 9 5pUTR ABI3 Medium_conserved miR-491-5p chr17:47288128 7-mer-m8 40 CDS ABI3 Medium_conserved miR-491-5p chr17:47297680 7-mer-m8 9 CDS ABI3 Medium_conserved miR-491-5p chr17:47300391 7-mer-A1 7 3pUTR

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score ABI3 RAID00003849 hsa-miR-148a-3p miRNA MIMAT0000243 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID00019057 hsa-miR-615-5p miRNA MIMAT0004804 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID00247539 hsa-miR-372-3p miRNA MIMAT0000724 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID00309872 hsa-miR-5685 miRNA MIMAT0022475 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID00386493 hsa-miR-4283 miRNA MIMAT0016914 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID00605193 hsa-miR-15b-5p miRNA MIMAT0000417 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01091759 hsa-miR-520c-3p miRNA MIMAT0002846 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01219190 hsa-miR-3909 miRNA MIMAT0018183 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01353314 hsa-miR-6846-5p miRNA MIMAT0027592 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01365390 hsa-miR-373-3p miRNA MIMAT0000726 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01447985 hsa-miR-6759-5p miRNA MIMAT0027418 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01559392 hsa-miR-4487 miRNA MIMAT0019021 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01666809 hsa-miR-10b-5p miRNA MIMAT0000254 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01700228 hsa-miR-370-3p miRNA MIMAT0000722 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID01948895 hsa-miR-214-3p miRNA MIMAT0000271 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02108265 hsa-miR-424-5p miRNA MIMAT0001341 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02125005 hsa-miR-4690-3p miRNA MIMAT0019780 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02162019 hsa-miR-647 miRNA MIMAT0003317 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02198921 hsa-miR-185-3p miRNA MIMAT0004611 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02203180 hsa-miR-152-3p miRNA MIMAT0000438 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02322556 hsa-miR-16-5p miRNA MIMAT0000069 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02386022 hsa-miR-10a-5p miRNA MIMAT0000253 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02489907 hsa-miR-6780a-5p miRNA MIMAT0027460 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02505937 hsa-miR-140-5p miRNA MIMAT0000431 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02541076 hsa-miR-148b-3p miRNA MIMAT0000759 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02814012 hsa-miR-15a-5p miRNA MIMAT0000068 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02856445 hsa-miR-497-5p miRNA MIMAT0002820 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02972529 hsa-miR-1470 miRNA MIMAT0007348 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID02974377 hsa-miR-6856-3p miRNA MIMAT0027613 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03166246 hsa-miR-744-5p miRNA MIMAT0004945 ABI3 mRNA 51225 CLASH 0.5483 ABI3 RAID03341359 hsa-miR-520b miRNA MIMAT0002843 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03402667 hsa-miR-520d-3p miRNA MIMAT0002856 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03428831 hsa-miR-134-5p miRNA MIMAT0000447 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03512779 hsa-miR-138-5p miRNA MIMAT0000430 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03602740 hsa-miR-6848-5p miRNA MIMAT0027596 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03611165 hsa-miR-6780a-3p miRNA MIMAT0027461 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03845740 hsa-miR-6829-5p miRNA MIMAT0027558 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03906673 hsa-miR-889-5p miRNA MIMAT0026719 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03919536 hsa-miR-504-5p miRNA MIMAT0002875 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID03959407 hsa-miR-195-5p miRNA MIMAT0000461 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID04016494 hsa-miR-1184 miRNA MIMAT0005829 ABI3 mRNA 51225 Prediction 0.1828 ABI3 RAID04024768 hsa-miR-6852-3p miRNA MIMAT0027605 ABI3 mRNA 51225 Prediction 0.1828