DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome CDCA3 3'UTR d43acc4961 BA020390 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 28cc33f6cf BA020391 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 238abb87b3 BA020392 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 2f97113af7 BA020393 NM_031299 chr12:6824224-6830376:- CDCA3 3'UTR 547d9d4c3c BA020394 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR b7ece39b3c BA020395 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 8fbc2e0373 BA020396 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 9b50bc3c99 BA020397 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 14819aad08 BA020398 NM_031299 chr12:6828748-6830376:- CDCA3 3'UTR 88716bd34f BA020399 NM_031299 chr12:6828233-6829909:- CDCA3 3'UTR 594483c843 BA020400 NM_031299 chr12:6828233-6830376:- CDCA3 3'UTR 0c823584fe BA020401 NM_031299 chr12:6829624-6830376:- CDCA3 3'UTR 3f9713be60 BA020402 NM_031299 chr12:6828748-6830376:- CDCA3 3'UTR b457aca745 NM_031299 chr12:6828266-6829282:- CDCA3 5'UTR d43acc4961 CA031665 NM_031299 chr12:6828469-6830717:- CDCA3 5'UTR 28cc33f6cf CA031666 NM_031299 chr12:6828811-6830929:- CDCA3 5'UTR 238abb87b3 CA031667 NM_031299 chr12:6828469-6830929:- CDCA3 5'UTR 2f97113af7 CA031668 NM_031299 chr12:6826214-6830929:- CDCA3 5'UTR 547d9d4c3c CA031669 NM_031299 chr12:6828469-6830929:- CDCA3 5'UTR b7ece39b3c CA031670 NM_031299 chr12:6828620-6830929:- CDCA3 5'UTR 8fbc2e0373 CA031671 NM_031299 chr12:6828469-6830683:- CDCA3 5'UTR 9b50bc3c99 CA031672 NM_031299 chr12:6828811-6830683:- CDCA3 5'UTR 14819aad08 CA031673 NM_031299 chr12:6828947-6830929:- CDCA3 5'UTR 88716bd34f CA031674 NM_031299 chr12:6828620-6830717:- CDCA3 5'UTR 594483c843 CA031675 NM_031299 chr12:6828620-6830683:- CDCA3 5'UTR 0c823584fe CA031676 NM_031299 chr12:6829837-6830929:- CDCA3 5'UTR 3f9713be60 CA031677 NM_031299 chr12:6828947-6830683:-

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT029492 hsa-miR-26b-5p Homo sapiens CDCA3 83461 Homo sapiens Microarray Functional MTI (Weak) 19088304 MIRT044752 hsa-miR-320a Homo sapiens CDCA3 83461 Homo sapiens CLASH Functional MTI (Weak) 23622248 MIRT051450 hsa-let-7e-5p Homo sapiens CDCA3 83461 Homo sapiens CLASH Functional MTI (Weak) 23622248 MIRT451801 hsa-miR-6739-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451801 hsa-miR-6739-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451802 hsa-miR-6733-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451802 hsa-miR-6733-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451803 hsa-miR-3153 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451803 hsa-miR-3153 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451804 hsa-miR-4668-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451804 hsa-miR-4668-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451805 hsa-miR-144-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451806 hsa-miR-5004-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451806 hsa-miR-5004-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451807 hsa-miR-3179 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451807 hsa-miR-3179 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451808 hsa-miR-4646-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451808 hsa-miR-4646-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451809 hsa-miR-204-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451809 hsa-miR-204-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451810 hsa-miR-6791-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451810 hsa-miR-6791-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451811 hsa-miR-4292 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451811 hsa-miR-4292 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451812 hsa-miR-4308 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451812 hsa-miR-4308 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451813 hsa-miR-4733-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451814 hsa-miR-1226-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451815 hsa-miR-6866-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451815 hsa-miR-6866-3p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451816 hsa-miR-188-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451816 hsa-miR-188-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451817 hsa-miR-6782-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451817 hsa-miR-6782-5p Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451818 hsa-miR-3154 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451818 hsa-miR-3154 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT451819 hsa-miR-3936 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT451819 hsa-miR-3936 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23592263 MIRT508360 hsa-miR-1197 Homo sapiens CDCA3 83461 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0000433 hsa-miR-142-5p 83461 CDCA3 ucaucacgaAAGAUGAAAUac | :||||||| aauuuuaaaUGUUACUUUAaa 3 13 189 209 [hg19:12:6957998-6958018:-] 0.5667 128 0 -5.79 -0.2110 MIMAT0000442 hsa-miR-9* 83461 CDCA3 ugaaagccaauagaUCGAAAUa ||||||| aaacugggacucacAGCUUUAu 2 9 121 142 [hg19:12:6958065-6958086:-] 0.5453 140 7 -11.67 -0.2139 MIMAT0004607 hsa-miR-138-1* 83461 CDCA3 ccgggaccacaacaCUUCAUcg |||||| cuuuuauauuaaagGAAGUAau 3 9 170 191 [hg19:12:6958016-6958037:-] 0.5667 120 0 -5.28 -0.1546 MIMAT0002890 hsa-miR-299-5p 83461 CDCA3 uacauacaCCCUG-CCAUUUGGu || |: ||||||| uuuaaaaaGGUAUAUGUAAACCu 2 15 204 226 [hg19:12:6957981-6958003:-] 0.5238 141 7 -9.51 -0.7730 MIMAT0000714 hsa-miR-302b* 83461 CDCA3 cuuucguGAAGGUACAAUUUCa |||::|| |||||| uguguuuCUUUUAUAUUAAAGg 2 16 163 184 [hg19:12:6958023-6958044:-] 0.6147 135 6 -10.11 -0.2790 MIMAT0000716 hsa-miR-302c* 83461 CDCA3 guCGUCCAUGGGGG--UACAAUuu | | ||| :::: |||||| aaGGAAGUAAUUUUAAAUGUUAcu 3 21 181 204 [hg19:12:6958003-6958026:-] 0.5667 127 0 -8.31 -0.2409 MIMAT0004685 hsa-miR-302d* 83461 CDCA3 cguucACGGAGGUACAAUUUCa | |:|::|| |||||| uguguUUCUUUUAUAUUAAAGg 2 18 163 184 [hg19:12:6958023-6958044:-] 0.6147 133 6 -11.63 -0.2814 MIMAT0004701 hsa-miR-338-5p 83461 CDCA3 guGAGUCGUGGUC--CUAUA-ACAa | ||| :|| | ||||| ||| caCCCAGGGCCUGGUGAUAUCUGUg 2 21 27 51 [hg19:12:6958156-6958180:-] 0.5337 123 0 -18.47 -0.1278 MIMAT0002860 hsa-miR-516b* 83461 CDCA3 ugggAGACUUUCCUUCGu | | ||||||||: uuuaUAUUAAAGGAAGUa 2 15 172 189 [hg19:12:6958018-6958035:-] 0.6147 138 0 -12.43 -0.5207 MIMAT0006778 hsa-miR-516a-3p 83461 CDCA3 ugggAGACUUUCCUUCGu | | ||||||||: uuuaUAUUAAAGGAAGUa 2 15 172 189 [hg19:12:6958018-6958035:-] 0.6147 138 0 -12.43 -0.5207 MIMAT0002872 hsa-miR-501-5p 83461 CDCA3 agagugggucccuGUUUCCUaa :|||||| guuucuuuuauauUAAAGGAag 3 10 166 187 [hg19:12:6958020-6958041:-] 0.6147 121 0 -10.26 -0.2704 MIMAT0003223 hsa-miR-559 83461 CDCA3 aaaaccACGUAUA-AAUGAAAu | :| || ||||||| aguaauUUUAAAUGUUACUUUa 2 16 186 207 [hg19:12:6958000-6958021:-] 0.5667 146 7 -6.68 -1.1825 MIMAT0003235 hsa-miR-570 83461 CDCA3 cguUUCCAUUAACG-ACAAAAGc :||| ||| || ||||||| acuGAGG-AAUGGCUUGUUUUCu 2 20 79 100 [hg19:12:6958107-6958128:-] 0.5453 160 7 -13.68 -0.4986 MIMAT0004798 hsa-miR-548b-5p 83461 CDCA3 ccgGUUUUGGUGU-UAAUGAAAa :|| ::| | :||||||| aagUAAUUUUAAAUGUUACUUUa 2 20 185 207 [hg19:12:6958000-6958022:-] 0.5667 146 7 -7.54 -1.1825 MIMAT0004803 hsa-miR-548a-5p 83461 CDCA3 ccauuUUGAGCGUU--AAUGAAAa ||:|: || ||||||| gaaguAAUUUUAAAUGUUACUUUa 2 18 184 207 [hg19:12:6958000-6958023:-] 0.5667 148 7 -9.46 -1.1790 MIMAT0003271 hsa-miR-603 83461 CDCA3 cguuuucauuaacguCACACAc |||||| cuuucuuugugucuuGUGUGUu 2 8 147 168 [hg19:12:6958039-6958060:-] 0.5800 120 6 -8.91 -0.1397 MIMAT0004806 hsa-miR-548c-5p 83461 CDCA3 ccgUUUUUGGCGUU---AAUGAAAa |: ||:: :|| ||||||| ggaAGUAAUUUUAAAUGUUACUUUa 2 20 183 207 [hg19:12:6958000-6958024:-] 0.5667 146 7 -7.53 -1.1825 MIMAT0003286 hsa-miR-617 83461 CDCA3 cgguGGAAGUUUA---CCCUUCAga |:||:| || |||||| guuuCUUUUAUAUUAAAGGAAGUaa 3 19 166 190 [hg19:12:6958017-6958041:-] 0.6147 129 0 -10.56 -0.5332 MIMAT0004812 hsa-miR-548d-5p 83461 CDCA3 ccgUUUUUGGUGUU---AAUGAAAa |: ||:: :|| ||||||| ggaAGUAAUUUUAAAUGUUACUUUa 2 20 183 207 [hg19:12:6958000-6958024:-] 0.5667 146 7 -8.61 -1.1825 MIMAT0004185 hsa-miR-802 83461 CDCA3 ugUUCCUAC-UUAGAA---ACAAUGAc ||||| | |||:|| ||||||| uaAAGGAAGUAAUUUUAAAUGUUACUu 2 22 179 205 [hg19:12:6958002-6958028:-] 0.5667 167 7 -15.00 -1.2732 MIMAT0003945 hsa-miR-765 83461 CDCA3 guAGUGGAAGGA--AGAGGAGGu |::::|||:| ||||||| gcUUGUUUUCUUAGACUCCUCCu 2 20 90 112 [hg19:12:6958095-6958117:-] 0.5453 154 7 -21.32 -0.6515 MIMAT0004921 hsa-miR-889 83461 CDCA3 uguUACCAACAGGCUAUAAUu :|| || |:: |||||| uguGUGUUUCUUUUAUAUUAa 2 19 161 181 [hg19:12:6958026-6958046:-] 0.6147 130 6 -6.97 -0.2594 MIMAT0004971 hsa-miR-921 83461 CDCA3 cuuAGGACCAAGACAGGGAGU-GAUc ||:| | || :||||| ||| uuuUCUUAG-ACUCCUCCUCAGCUAc 2 23 95 119 [hg19:12:6958088-6958112:-] 0.5453 120 0 -13.11 -0.3169 MIMAT0005577 hsa-miR-1226 83461 CDCA3 gaucccuUGUGUCCC-GACCACu || ||||| |||||| ugcagucACCCAGGGCCUGGUGa 2 16 21 43 [hg19:12:6958164-6958186:-] 0.5928 131 6 -23.80 -0.6620 MIMAT0005875 hsa-miR-548j 83461 CDCA3 ugguuucuggcguUAAUGAAAa :||||||| aguaauuuuaaauGUUACUUUa 2 10 186 207 [hg19:12:6958000-6958021:-] 0.5667 141 7 -5.00 -1.1843 MIMAT0005881 hsa-miR-1291 83461 CDCA3 ugacgaccagaAGUCAGUCCCGGu ||| ||||||| cagcaaugcagUCACCCAGGGCCu 2 14 15 38 [hg19:12:6958169-6958192:-] 0.5928 149 7 -18.87 -0.1720 MIMAT0005882 hsa-miR-548k 83461 CDCA3 ucguuuuaggcguucAUGAAAa |||||| aguaauuuuaaauguUACUUUa 2 8 186 207 [hg19:12:6958000-6958021:-] 0.5667 120 6 -5.40 -0.2175 MIMAT0005889 hsa-miR-548l 83461 CDCA3 cuguuuugggcguuuAUGAAAa |||||| aguaauuuuaaauguUACUUUa 2 8 186 207 [hg19:12:6958000-6958021:-] 0.5667 120 6 -3.42 -0.2215 MIMAT0005916 hsa-miR-548n 83461 CDCA3 uguUUUAGGUGU-UAAUGAAAac || |::| | :||||||| aguAAUUUUAAAUGUUACUUUaa 3 20 186 208 [hg19:12:6957999-6958021:-] 0.5667 138 0 -6.46 -0.2015 MIMAT0005928 hsa-miR-548h 83461 CDCA3 cuguuuuuggcgcUAAUGAAAa :||||||| aguaauuuuaaauGUUACUUUa 2 10 186 207 [hg19:12:6958000-6958021:-] 0.5667 141 7 -5.29 -1.1825 MIMAT0005935 hsa-miR-548i 83461 CDCA3 ccguuUUAGGCGUU--AAUGAAAa |||:: || ||||||| gaaguAAUUUUAAAUGUUACUUUa 2 18 184 207 [hg19:12:6958000-6958023:-] 0.5667 148 7 -8.00 -1.1790 MIMAT0005788 hsa-miR-513b 83461 CDCA3 uauuuacuguggaGGAACACuu :|||||| ggcuuucuuugugUCUUGUGug 3 10 145 166 [hg19:12:6958041-6958062:-] 0.5800 121 0 -13.40 -0.1552 MIMAT0005955 hsa-miR-1197 83461 CDCA3 ucuUCA-UCUGGUACACAGGAu :|| | |:| |||||||| ccuGGUGAUAUC-UGUGUCCUc 2 19 36 56 [hg19:12:6958151-6958171:-] 0.5395 151 7 -16.32 -0.4638 MIMAT0007886 hsa-miR-1911* 83461 CDCA3 ccucUGGUGUUACGGACCAc ||| ||: ||||||| agucACC-CAGGGCCUGGUg 2 17 24 42 [hg19:12:6958165-6958183:-] 0.5337 154 7 -25.26 -0.1098 MIMAT0014989 hsa-miR-3126-5p 83461 CDCA3 acGAAGACCGUAG--ACAGG-GAGu || || :||| ||||| ||| gcCUGGUGAUAUCUGUGUCCUCUCa 2 21 35 59 [hg19:12:6958148-6958172:-] 0.5395 123 0 -21.42 -0.3181 MIMAT0014998 hsa-miR-3133 83461 CDCA3 uaACCCAAAAUUCUC-AAGAAAu || || ||: | | |||||| uuUGUGUCUUGUGUGUUUCUUUu 2 21 152 174 [hg19:12:6958033-6958055:-] 0.5800 128 6 -6.59 -1.0891 MIMAT0014998 hsa-miR-3133 83461 CDCA3 uaacccAAAAUUCUCAA-GAAAu |||||| ||| |||| aaguaaUUUUAAAUGUUACUUUa 2 17 185 207 [hg19:12:6958000-6958022:-] 0.5667 128 0 -8.46 -1.2165 MIMAT0015012 hsa-miR-3143 83461 CDCA3 gcUUUCUUCGCGAAAUGUUACAAUa ||:||||: ||| ||||||| uaAAGGAAGUAAUUUUAAAUGUUAc 2 24 179 203 [hg19:12:6958004-6958028:-] 0.5667 175 7 -14.60 -1.2110 MIMAT0015015 hsa-miR-3144-3p 83461 CDCA3 auuucucuggcUUGUCCAUAUa || ||||||| auguuacuuuaAAAAGGUAUAu 2 12 197 218 [hg19:12:6957989-6958010:-] 0.5238 147 7 -9.68 -1.0978 MIMAT0015026 hsa-miR-3153 83461 CDCA3 uuUACAGG-GA-UGAG--CGAAAGGGg :||||| || || | ||||||| cuGUGUCCUCUCACCCCUUCUUUCCCa 2 22 47 73 [hg19:12:6958134-6958160:-] 0.5395 154 7 -22.15 -0.8954 MIMAT0015028 hsa-miR-3154 83461 CDCA3 agACG-AGGGUUGAGGGGAAGAc ||: |||: | |||||||| ucUGUGUCCUCUCACCCCUUCUu 2 21 46 68 [hg19:12:6958139-6958161:-] 0.5395 159 7 -25.68 -0.3931 MIMAT0015037 hsa-miR-3163 83461 CDCA3 caGAAUGACGGGAGUAAAAUAu |||: ||: :|: |||||| guCUUG-UGUGUUUCUUUUAUa 2 21 157 177 [hg19:12:6958030-6958050:-] 0.6147 130 6 -14.22 -0.4119 MIMAT0015037 hsa-miR-3163 83461 CDCA3 cagaaugacgggAGUAAAAUau | |||||| uauuaaaggaagUAAUUUUAaa 3 11 176 197 [hg19:12:6958010-6958031:-] 0.5667 122 0 -1.75 -0.2229 MIMAT0015056 hsa-miR-3179 83461 CDCA3 ugcaaauuuAAAGUGGGGAAGa | |||||||||| ucuguguccUCUCACCCCUUCu 2 14 46 67 [hg19:12:6958140-6958161:-] 0.5395 157 7 -22.18 -0.6365 MIMAT0015060 hsa-miR-548w 83461 CDCA3 ucCGUUUUUGGCGU---CAAUGAAAa | |: ||:: :| |||||||| agGAAGUAAUUUUAAAUGUUACUUUa 2 22 182 207 [hg19:12:6958000-6958025:-] 0.5667 148 7 -9.79 -1.1825 MIMAT0016849 hsa-miR-4294 83461 CDCA3 ggGACGACAUCUGAGGg :| || |||||||| guUUUCU-UAGACUCCu 2 16 94 109 [hg19:12:6958098-6958113:-] 0.5453 149 7 -15.19 -0.5871 MIMAT0016890 hsa-miR-4261 83461 CDCA3 acccagggACAAAGGa ||||||: gucuugugUGUUUCUu 2 9 157 172 [hg19:12:6958035-6958050:-] 0.6147 124 0 -9.90 -0.1162 MIMAT0016905 hsa-miR-4275 83461 CDCA3 uuUCUUCACCAUUAAcc | |:| |||||| uuAAAGGAAGUAAUUuu 3 16 178 194 [hg19:12:6958013-6958029:-] 0.5667 127 0 -6.00 -0.1224 MIMAT0016912 hsa-miR-4282 83461 CDCA3 aggaccuacguUUAAAAu |||||| uuaaaggaaguAAUUUUa 2 8 178 195 [hg19:12:6958012-6958029:-] 0.5667 120 6 -7.81 -0.2023 MIMAT0016919 hsa-miR-4292 83461 CDCA3 gguuccggccGGGUCCCc ||||||| ccccuucuuuCCCAGGGa 2 9 60 77 [hg19:12:6958130-6958147:-] 0.5453 140 7 -16.76 -0.8269 MIMAT0016920 hsa-miR-4289 83461 CDCA3 acUAUCGGGACGU-GUUACg ||:|||| || ||||| gcAUGGCCC--CAGCAAUGc 2 18 6 23 [hg19:12:6958184-6958201:-] 0.5928 122 0 -19.83 -0.2695 MIMAT0000091 hsa-miR-33a 83461 CDCA3 acGUUACGUUGAUGUUACGUg || || | :||||||| ugCAUGGCCCCAGCAAUGCAg 2 20 5 25 [hg19:12:6958182-6958202:-] 0.5928 151 7 -14.49 -0.1122 MIMAT0000456 hsa-miR-186 83461 CDCA3 ucggguuuuccucuuAAGAAAc |||||| uugugucuuguguguUUCUUUu 2 8 153 174 [hg19:12:6958033-6958054:-] 0.5800 120 6 -4.29 -0.1211 MIMAT0000460 hsa-miR-194 83461 CDCA3 agguguaccucaacgACAAUGu |||||| ggaaguaauuuuaaaUGUUACu 2 8 183 204 [hg19:12:6958003-6958024:-] 0.5667 120 6 -7.19 -0.2849 MIMAT0000510 hsa-miR-320a 83461 CDCA3 agcgggaGAGUUGGGUCGAAAa |||| ||||||| acugggaCUCA---CAGCUUUa 2 16 123 141 [hg19:12:6958066-6958084:-] 0.5453 143 7 -12.19 -0.7610 MIMAT0004683 hsa-miR-362-3p 83461 CDCA3 acuuAGGAACUUA-UCCACACAa ||:||| :| |||||| gcuuUCUUUGUGUCUUGUGUGUu 2 19 146 168 [hg19:12:6958039-6958061:-] 0.5800 125 6 -13.89 -0.1357 MIMAT0000730 hsa-miR-377 83461 CDCA3 uguuuucAACGGA-AACACACua |||: | ||||||| gcuuucuUUGUGUCUUGUGUGuu 3 16 146 168 [hg19:12:6958039-6958061:-] 0.5800 134 0 -14.16 -0.1124 MIMAT0004692 hsa-miR-340 83461 CDCA3 uuaguCAGAGUAACGAAAUAUu || | || :|||||| gucuuGUGUGUUUCUUUUAUAu 2 18 157 178 [hg19:12:6958029-6958050:-] 0.6147 137 6 -6.15 -0.1686 MIMAT0001629 hsa-miR-329 83461 CDCA3 uuucuccaauuggucCACACAa |||||| cuuucuuugugucuuGUGUGUu 2 8 147 168 [hg19:12:6958039-6958060:-] 0.5800 120 6 -11.05 -0.1397 MIMAT0002171 hsa-miR-410 83461 CDCA3 uguccgGUAGACACAAUAUAa ::|:| | |||||| cuugugUGUUUCUUUUAUAUu 2 16 159 179 [hg19:12:6958028-6958048:-] 0.6147 123 6 -6.28 -0.1871 MIMAT0002816 hsa-miR-494 83461 CDCA3 cuccAAAGGGCACAUACAAAGu | | :| |||:|||||| ucuuUGUGUCUUGUGUGUUUCu 2 19 150 171 [hg19:12:6958036-6958057:-] 0.5800 146 6 -14.74 -0.1639 MIMAT0003301 hsa-miR-33b 83461 CDCA3 cguUA-CGUUGUCGUUACGUg || || |||||||||| ugcAUGGCCCCAGCAAUGCAg 2 18 5 25 [hg19:12:6958182-6958202:-] 0.5928 160 7 -20.43 -0.1122 MIMAT0005792 hsa-miR-320b 83461 CDCA3 aacgggaGAGUUGGGUCGAAAa |||| ||||||| acugggaCUCA---CAGCUUUa 2 16 123 141 [hg19:12:6958066-6958084:-] 0.5453 143 7 -12.19 -0.7610 MIMAT0005793 hsa-miR-320c 83461 CDCA3 ugggaGAGUUGGGUCGAAAa |||| ||||||| ugggaCUCA---CAGCUUUa 2 16 125 141 [hg19:12:6958066-6958082:-] 0.5453 143 7 -12.19 -0.7610 MIMAT0004922 hsa-miR-875-5p 83461 CDCA3 guggacuauuuugacUCCAUAu |||||| aauguuacuuuaaaaAGGUAUa 2 8 196 217 [hg19:12:6957990-6958011:-] 0.5238 120 6 -10.80 -0.2134 MIMAT0004926 hsa-miR-708 83461 CDCA3 ggGUCGAUC-UAACAUUC-GAGGAa ::||| | || | || ||||| aaUGGCUUGUUUUCUUAGACUCCUc 2 22 86 110 [hg19:12:6958097-6958121:-] 0.5453 120 0 -11.02 -0.5122 MIMAT0004954 hsa-miR-543 83461 CDCA3 uuCUUCACGUGGCGCUUACAAa ||||| |:: : |||||| agGAAGU-AAUUUUAAAUGUUa 2 21 182 202 [hg19:12:6958005-6958025:-] 0.5667 126 6 -9.20 -0.3105 MIMAT0006764 hsa-miR-320d 83461 CDCA3 aggaGAGUUGGGUCGAAAa |||| ||||||| gggaCUCA---CAGCUUUa 2 16 126 141 [hg19:12:6958066-6958081:-] 0.5453 143 7 -12.19 -0.7610

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G009925 CDCA3 Homo sapiens 83461

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End CDCA3; C8; GRCC8; TOME1 1 148 100 1066.363 - chr12 6958058 6958206 CDCA3; C8; GRCC8; TOME1 149 195 99.471 1066.363 - chr12 6958011 6958058 CDCA3; C8; GRCC8; TOME1 196 215 91.757 1066.363 - chr12 6957991 6958011 CDCA3; C8; GRCC8; TOME1 216 234 2.313 1066.363 - chr12 6957972 6957991 CDCA3; C8; GRCC8; TOME1 235 664 1.844 1066.363 - chr12 6957542 6957972 CDCA3; C8; GRCC8; TOME1 665 665 0.01 1066.363 - chr12 6957541 6957542

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile CDCA3 hsa-miR-20astar beg:8 end:26 pic:3' GAAATTCACGA-GTA-TTACGTCA 5'& || || |||||||| &5' --------GCCCCAGCAATGCAGT 3' CDCA3 hsa-miR-9star beg:123 end:143 pic:3' TGAAAGCCAATAGA-TCGAAATA 5'& .|| || |||||||| &5' -----TGGGACTCACAGCTTTAT 3' CDCA3 hsa-miR-33b beg:8 end:25 pic:3' CGTTACGTTGTCGTTACGTG 5'& || |||||||||| &5' -----GCCCCAGCAATGCA- 3' CDCA3 hsa-miR-3118 beg:12 end:30 pic:3' TCTTAAAAGTA-TTACGTCAGTGT 5'& || ||||||||||| &5' --------CAGCAATGCAGTCAC- 3' CDCA3 hsa-miR-3179 beg:54 end:68 pic:3' TGCAAATTTAAAGTGGGGAAGA 5'& ||||||||||| &5' -----------TCACCCCTTCT 3' CDCA3 hsa-miR-765 beg:93 end:112 pic:3' GTAGTGGAAGGAA---GAGGAGGT 5'& .||.||| ||||||| &5' ------TTTTCTTAGACTCCTCC- 3' CDCA3 ebv-miR-BART20-5p beg:72 end:97 pic:3' CCTT--ACTTCTGTACGGACGAT 5'& ||| |||.|| ||.||.| &5' GGATACTGAGGAATGGCTTGTT- 3' CDCA3 ebv-miR-BART2-3p beg:89 end:113 pic:3' AAATAAAAGAGGTTTAGCGAGGAA 5'& ||.||||||. .| || ||||| &5' -TTGTTTTCTTAGACTC-CTCCT- 3' CDCA3 hsa-miR-1911star beg:25 end:43 pic:3' CCTCTGGTGTTACGGACCAC 5'& ||| ||. |||||||| &5' ----ACC-CAGGGCCTGGTG 3' CDCA3 kshv-miR-K12-12 beg:31 end:42 pic:3' GCCTCTCCTTACCACCGGACCAA 5'& |||||||| &5' --------------GGCCTGGT- 3' CDCA3 hcmv-miR-UL22Astar beg:31 end:44 pic:3' GATGTTTGATCGTAAGACCACT 5'& .|| ||||||| &5' ---------GGC---CTGGTGA 3' CDCA3 hsa-miR-1185 beg:46 end:58 pic:3' TTGTATGTTTCCCATAGGAGA 5'& ||.|||||| &5' ------------GTGTCCTCT 3' CDCA3 hsa-miR-1197 beg:36 end:56 pic:3' TCTTCATCTGGT-ACACAGGAT 5'& .|| ||. |||||||| &5' ---GGT-GATATCTGTGTCCT- 3' CDCA3 hsa-miR-1226 beg:22 end:44 pic:3' GATCCCTTGTGTCCC-GACCACT 5'& | || ||||| ||||||| &5' ----GTCACCCAGGGCCTGGTGA 3' CDCA3 hsa-miR-1262 beg:11 end:33 pic:3' TAGGAAG--ATGTTTAAGTGGGTA 5'& || |.|| ||||||| &5' --CCAGCAATGCAG--TCACCCA- 3' CDCA3 hsa-miR-1286 beg:142 end:164 pic:3' TCCCGAGTAGAAC-CAGGACGT 5'& |||||. .||| |||.||. &5' -GGGCTTTCTTTGTGTCTTGT- 3' CDCA3 hsa-miR-1291 beg:18 end:38 pic:3' TGACGACCAGAAGTCAGTCCCGGT 5'& ||| ||| ||||||| &5' --TGCAG----TCACCCAGGGCC- 3' CDCA3 hsa-miR-134 beg:9 end:30 pic:3' GGGGAGACCAGTTG-GTCAGTGT 5'& |||| |||. ||||||| &5' CCCCAG----CAATGCAGTCAC- 3' CDCA3 hsa-miR-1914star beg:50 end:67 pic:3' GGAGGGTCACGCCCTGGGGAGG 5'& ||||.| ||||||.| &5' CCTCTC--------ACCCCTTC 3' CDCA3 hsa-miR-197 beg:29 end:44 pic:3' CGACCCACCTCTTCC--ACCACTT 5'& |.|| |||||| &5' -----------AGGGCCTGGTGA- 3' CDCA3 hsa-miR-208b beg:147 end:164 pic:3' TGTTTGGAAAACAAGCAGAATA 5'& .|||| .|||||.| &5' -----TCTTTG---TGTCTTGT 3' CDCA3 hsa-miR-302f beg:180 end:193 pic:3' TTTGTACCTTCGTTAAT 5'& |||||.|||| &5' ------GGAAGTAATT- 3' CDCA3 hsa-miR-3136 beg:8 end:29 pic:3' TTACTGGGA-TGGATAAGTCAGTC 5'& ||.||| .| |||||| &5' --TGGCCCCAGCAATG-CAGTCA- 3' CDCA3 hsa-miR-3143 beg:181 end:203 pic:3' GCTTTCTTCGCGAAATGTTACAATA 5'& |.||||. ||| ||||||| &5' ---AGGAAGTAATTTTAAATGTTA- 3' CDCA3 hsa-miR-3154 beg:43 end:68 pic:3' AGACG-AGGGTTGAGGGGAAGAC 5'& ||||. |||. | |||||||| &5' TCTGTGTCCTCTCACCCCTTCT- 3' CDCA3 hsa-miR-3162 beg:51 end:73 pic:3' GAGGGGTGGGAAGATGAGGGATT 5'& |||.| ||||||| .|||| &5' CTCTCACCCCTTCT-TTCCC--- 3' CDCA3 hsa-miR-3163 beg:155 end:178 pic:3' CAGAATGACGGGAGTAAAATAT 5'& |||||. ||. .|. ||||||| &5' GTCTTG-TGTGTTTCTTTTATA 3' CDCA3 hsa-miR-3181 beg:22 end:42 pic:3' GGCCGCGGCTCCCGGGCTA 5'& | | || ||||||.|.| &5' --GTCACCCAGGGCCTGGT 3' CDCA3 hsa-miR-3185 beg:48 end:69 pic:3' GGCGTCTGGCTGGCGGAAGAAGA 5'& .|. |. ||| |||||||. &5' -TGTCCTCTCACC-CCTTCTTT- 3' CDCA3 hsa-miR-3189 beg:56 end:77 pic:3' GATGGGGTAGTCTGGGTTCCC 5'& ||||| || ||||.|| &5' --ACCCCTTCTTTCCCAGGG- 3' CDCA3 hsa-miR-3189 beg:18 end:36 pic:3' GATGGGGTAGTCTGGGTTCCC 5'& |.| .|| |||||.|| &5' -TGCA--GTC--ACCCAGGG- 3' CDCA3 hsa-miR-3191 beg:35 end:57 pic:3' GACAGACCGGTC--GATGCAGGGGT 5'& ||||. | ||..||||.| &5' ----CTGGTGATATCTGTGTCCTC- 3' CDCA3 hsa-miR-3198 beg:60 end:81 pic:3' AGAGGTAAGGGGTCCTGAGGTG 5'& ||.| ||.||||||. .|| &5' -CTTC-TTTCCCAGGGA--TAC 3' CDCA3 hsa-miR-3202 beg:51 end:68 pic:3' TAATTTCGAGAAGAGGGAAGGT 5'& |||| ||||||. &5' -------CTCTCACCCCTTCT- 3' CDCA3 hsa-miR-320c beg:49 end:70 pic:3' TGGGAGAGTTGGGTCGAAAA 5'& .||||||| ||| |||| &5' -TCCTCTCACCCCTTCTTT- 3' CDCA3 hsa-miR-320d beg:49 end:70 pic:3' AGGAGAGTTGGGTCGAAAA 5'& |||||||| ||| |||| &5' TCCTCTCACCCCTTCTTT- 3' CDCA3 hsa-miR-320e beg:50 end:69 pic:3' GGAAGAGTTGGGTCGAAA 5'& || ||||| ||| |||| &5' CC-TCTCACCCCTTCTTT 3' CDCA3 hsa-miR-335star beg:69 end:88 pic:3' CCAGTCCTCGTTATTACTTTTT 5'& |||| .||| |||..|| &5' ---CAGG---GATACTGAGGAA 3' CDCA3 hsa-miR-34c-3p beg:26 end:45 pic:3' GGA--CCGGCACACCAATCACTAA 5'& || |||| |.||||| &5' CCCAGGGCC-------TGGTGAT- 3' CDCA3 hsa-miR-362-5p beg:53 end:79 pic:3' TGAGTGTGGATCCAA-GGTTCCTAA 5'& ||||| ||| |||.|||| &5' -CTCACCCCTTCTTTCCCAGGGAT- 3' CDCA3 hsa-miR-4251 beg:85 end:104 pic:3' AACCGGG-AAAAGAGTCC 5'& ||||.. ||||||.|| &5' -TGGCTTGTTTTCTTAG- 3' CDCA3 hsa-miR-4260 beg:123 end:142 pic:3' ACCCTGAG-GTACGGGGTTC 5'& ||||||| || ||...| &5' -GGGACTCACA-GCTTTA-- 3' CDCA3 hsa-miR-4261 beg:152 end:173 pic:3' ACCCAGGG---ACAAAGGA 5'& || |||.. ||||||.| &5' TGTGTCTTGTGTGTTTCTT 3' CDCA3 hsa-miR-4261 beg:85 end:101 pic:3' ACCCAGGGACAAAGGA 5'& ||| |.|||||.|| &5' TGG---CTTGTTTTCT 3' CDCA3 hsa-miR-4271 beg:53 end:73 pic:3' GGGGTGGAAAAGAAGGGGG 5'& |.|||| |||||.||| &5' -CTCACCCCTTCTTTCCC- 3' CDCA3 hsa-miR-4294 beg:88 end:110 pic:3' GGGACGAC---ATCTGAGGG 5'& |.||.| ||||||||. &5' -CTTGTTTTCTTAGACTCCT 3' CDCA3 hsa-miR-4308 beg:68 end:78 pic:3' TTCTTCTTTGAGGTCCCT 5'& ||||||| &5' -----------CCAGGGA 3' CDCA3 hsa-miR-4314 beg:58 end:77 pic:3' GACAGGGT--AAAGGGTCTC 5'& ||| ||||||||.| &5' ----CCCTTCTTTCCCAGGG 3' CDCA3 hsa-miR-516a-3p beg:177 end:190 pic:3' TGGGAGACTTTCCTTCGT 5'& ||||||||.| &5' --------AAAGGAAGTA 3' CDCA3 hsa-miR-516bstar beg:177 end:190 pic:3' TGGGAGACTTTCCTTCGT 5'& ||||||||.| &5' --------AAAGGAAGTA 3' CDCA3 hsa-miR-518cstar beg:60 end:78 pic:3' GTCTTTCACGAAGGGA-GGTCTCT 5'& ||||..| ||||.|| &5' ---------CTTCTTTCCCAGGGA 3' CDCA3 hsa-miR-525-3p beg:143 end:162 pic:3' GCGAGATTTCCCTTCGCGGAAG 5'& |||.| |.|.||| &5' -GCTTTCTTT----GTGTCTT- 3' CDCA3 hsa-miR-564 beg:32 end:54 pic:3' CGGACGACTGT-GGCACGGA 5'& ||||| |||.| |.|||.| &5' GCCTGGTGATATCTGTGTC- 3' CDCA3 hsa-miR-570 beg:79 end:100 pic:3' CGTTTCCATTAACG-ACAAAAGC 5'& .||| ||| || ||||||| &5' ---GAGG-AATGGCTTGTTTTC- 3' CDCA3 hsa-miR-627 beg:123 end:135 pic:3' AGGAGAAAAGAATCTCTGAGTG 5'& |.||||||| &5' -------------GGGACTCAC 3' CDCA3 hsa-miR-630 beg:59 end:82 pic:3' TGGAAGGGACCATGTCTTATGA 5'& |||||..| .|.||||| &5' -CCTTCTTTCCCA-GGGATACT 3' CDCA3 hsa-miR-647 beg:18 end:30 pic:3' CTTCCTTCACTCACGTCGGTG 5'& |||||.||| &5' ------------TGCAGTCAC 3' CDCA3 hsa-miR-760 beg:15 end:38 pic:3' AGGGGTGTC--TGGGTCTCGGC 5'& | ..||| ||||||.||| &5' -CAATGCAGTCACCCAGGGCC- 3' CDCA3 hsa-miR-938 beg:120 end:148 pic:3' TGACCCA-AGTG--GAAATT-CCCGT 5'& |||||| |||| ||||| |||| &5' ACTGGGACTCACAGCTTTATTGGGC- 3' CDCA3 hsa-miR-943 beg:14 end:29 pic:3' GACCTCCTGCCGT--TGTCAGTC 5'& ||| .|||||| &5' ----------GCAATGCAGTCA- 3' CDCA3 hsa-miR-99bstar beg:124 end:150 pic:3' GCCTGGGTGTCTGT----GCTCGAAC 5'& ||||.||||| | .|.|||| &5' -GGACTCACAG-CTTTATTGGGCTT- 3' CDCA3 hsv1-miR-H7 beg:44 end:66 pic:3' GGAAACCAACGTCTGGGGAAA 5'& || || | ||||||| &5' -CTGTGTCCTCTCACCCCTT- 3' CDCA3 hsv2-miR-H6 beg:46 end:68 pic:3' CGTAGGGGAGC--GGAAGGTAA 5'& |..|||.||| |||||. &5' GTGTCCTCTCACCCCTTCT--- 3' CDCA3 hsv2-miR-H7-5p beg:44 end:66 pic:3' GGAAACCAATGCCTGGGGAAA 5'& || || ||||||| &5' -CTGTGTCCTCTCACCCCTT- 3'

DNA & RNA Element - SomamiR Gene Name Mutation Mutation ID miR ID Chromosome Location Ref Alt mirsite mirseed Seed Class Sample Name Cancer Type CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-1180-3p chr12 6850490 C A gcaCGGAAAcctatg UUUCCGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-154-5p chr12 6850490 C A gcacggaAACCTAtg UAGGUUAU m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-29b-2-5p chr12 6850490 C A gcacgGAAACCtatg CUGGUUUC m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-329-5p chr12 6850490 C A gcacggAAACCTatg GAGGUUUU m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3650 chr12 6850490 C A gcacggACACCTatg AGGUGUGU m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3657 chr12 6850490 C A gcacGGACACctatg UGUGUCCC m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3934-5p chr12 6850490 C A gcacggACACCTatg UCAGGUGU m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4464 chr12 6850490 C A gcacggAAACCTatg AAGGUUUG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4669 chr12 6850490 C A gcaCGGACACctatg UGUGUCCG m7b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4694-5p chr12 6850490 C A gcacggACACCTatg AGGUGUUA m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4748 chr12 6850490 C A gcacggAAACCTatg GAGGUUUG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6774-3p chr12 6850490 C A gcacGGACACctatg UCGUGUCC m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6800-5p chr12 6850490 C A gcacggaCACCTAtg GUAGGUGA m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6802-5p chr12 6850490 C A gcacggaCACCTAtg CUAGGUGG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6815-5p chr12 6850490 C A gcacggaCACCTAtg UAGGUGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6865-5p chr12 6850490 C A gcacggaCACCTAtg UAGGUGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-1180-3p chr12 6850490 C A gcaCGGAAAcctatg UUUCCGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-154-5p chr12 6850490 C A gcacggaAACCTAtg UAGGUUAU m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-29b-2-5p chr12 6850490 C A gcacgGAAACCtatg CUGGUUUC m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-329-5p chr12 6850490 C A gcacggAAACCTatg GAGGUUUU m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3650 chr12 6850490 C A gcacggACACCTatg AGGUGUGU m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3657 chr12 6850490 C A gcacGGACACctatg UGUGUCCC m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-3934-5p chr12 6850490 C A gcacggACACCTatg UCAGGUGU m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4464 chr12 6850490 C A gcacggAAACCTatg AAGGUUUG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4669 chr12 6850490 C A gcaCGGACACctatg UGUGUCCG m7b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4694-5p chr12 6850490 C A gcacggACACCTatg AGGUGUUA m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-4748 chr12 6850490 C A gcacggAAACCTatg GAGGUUUG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6774-3p chr12 6850490 C A gcacGGACACctatg UCGUGUCC m6c TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6800-5p chr12 6850490 C A gcacggaCACCTAtg GUAGGUGA m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6802-5p chr12 6850490 C A gcacggaCACCTAtg CUAGGUGG m6b TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6815-5p chr12 6850490 C A gcacggaCACCTAtg UAGGUGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850490C>A COSM549721 hsa-miR-6865-5p chr12 6850490 C A gcacggaCACCTAtg UAGGUGGC m6a TCGA-35-4122-01 [lung][NS][carcinoma][adenocarcinoma] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-106a-3p chr12 6850500 A G tcttggtATTGCAcg CUGCAAUG m6b TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-196a-3p chr12 6850500 A G tcttggTGTTGCacg CGGCAACA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-21-3p chr12 6850500 A G tctTGGTGTTGcacg CAACACCA m8a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-323b-3p chr12 6850500 A G tcttgGTATTGcacg CCCAAUAC m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-3591-3p chr12 6850500 A G tctTGGTGTTgcacg AAACACCA m7b TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-3942-5p chr12 6850500 A G tcttggTATTGCacg AAGCAAUA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-4703-5p chr12 6850500 A G tcttggTATTGCacg UAGCAAUA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-4772-3p chr12 6850500 A G tcttggtGTTGCAcg CCUGCAAC m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-891a-5p chr12 6850500 A G tcttggtGTTGCAcg UGCAACGA m6a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-891b chr12 6850500 A G tcttggtGTTGCAcg UGCAACUU m6a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-106a-3p chr12 6850500 A G tcttggtATTGCAcg CUGCAAUG m6b TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-196a-3p chr12 6850500 A G tcttggTGTTGCacg CGGCAACA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-21-3p chr12 6850500 A G tctTGGTGTTGcacg CAACACCA m8a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-323b-3p chr12 6850500 A G tcttgGTATTGcacg CCCAAUAC m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-3591-3p chr12 6850500 A G tctTGGTGTTgcacg AAACACCA m7b TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-3942-5p chr12 6850500 A G tcttggTATTGCacg AAGCAAUA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-4703-5p chr12 6850500 A G tcttggTATTGCacg UAGCAAUA m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-4772-3p chr12 6850500 A G tcttggtGTTGCAcg CCUGCAAC m6c TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-891a-5p chr12 6850500 A G tcttggtGTTGCAcg UGCAACGA m6a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV] CDCA3 chr12:g.6850500A>G COSM3399031 hsa-miR-891b chr12 6850500 A G tcttggtGTTGCAcg UGCAACUU m6a TCGA-27-1838-01 [central_nervous_system][brain][glioma][astrocytoma_Grade_IV]

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region CDCA3 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr12:6958225 7-mer-m8 51 3pUTR, CDS, ncRNA CDCA3 High_conserved miR-135ab/135a-5p chr12:6959559 7-mer-m8 20 ncRNA CDCA3 High_conserved miR-138/138ab chr12:6959637 7-mer-A1 42 CDS, ncRNA CDCA3 High_conserved miR-138/138ab chr12:6959728 7-mer-A1 24 CDS, ncRNA CDCA3 High_conserved miR-138/138ab chr12:6960081 7-mer-m8 11 CDS, ncRNA CDCA3 High_conserved miR-142-3p chr12:6958491 7-mer-m8 16 CDS, ncRNA CDCA3 High_conserved miR-143/1721/4770 chr12:6959507 7-mer-A1 18 ncRNA CDCA3 High_conserved miR-145 chr12:6958275 7-mer-m8 38 3pUTR, CDS, ncRNA CDCA3 High_conserved miR-145 chr12:6958293 7-mer-m8 44 3pUTR, CDS, ncRNA CDCA3 High_conserved miR-145 chr12:6959713 7-mer-m8 16 CDS, ncRNA CDCA3 High_conserved miR-145 chr12:6960253 7-mer-A1 9 5pUTR CDCA3 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr12:6958224 7-mer-m8 49 3pUTR, CDS, ncRNA CDCA3 High_conserved miR-18ab/4735-3p chr12:6958920 7-mer-m8 24 CDS, ncRNA CDCA3 High_conserved miR-199ab-5p chr12:6960254 7-mer-A1 7 5pUTR CDCA3 High_conserved miR-208ab/208ab-3p chr12:6959705 7-mer-A1 11 CDS, ncRNA CDCA3 High_conserved miR-210 chr12:6960064 7-mer-A1 38 CDS, ncRNA CDCA3 High_conserved miR-217 chr12:6958180 7-mer-m8 9 3pUTR, ncRNA CDCA3 High_conserved miR-22/22-3p chr12:6961079 7-mer-A1 7 5pUTR CDCA3 High_conserved miR-223 chr12:6960977 7-mer-m8 31 5pUTR CDCA3 High_conserved miR-24/24ab/24-3p chr12:6960423 7-mer-A1 7 5pUTR, ncRNA CDCA3 High_conserved miR-124/124ab/506 chr12:6960999 7-mer-m8 38 5pUTR CDCA3 High_conserved miR-33ab/33-5p chr12:6958182 7-mer-m8 13 3pUTR, ncRNA CDCA3 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr12:6959549 7-mer-m8 11 ncRNA CDCA3 High_conserved miR-10abc/10a-5p chr12:6958359 8-mer 47 CDS, ncRNA CDCA3 High_conserved miR-10abc/10a-5p chr12:6960236 7-mer-m8 4 5pUTR CDCA3 High_conserved miR-490-3p chr12:6958590 7-mer-m8 13 ncRNA CDCA3 High_conserved miR-499-5p chr12:6959705 7-mer-A1 11 CDS, ncRNA CDCA3 Medium_conserved miR-504/4725-5p chr12:6960476 7-mer-A1 27 5pUTR CDCA3 Medium_conserved miR-543 chr12:6958005 7-mer-A1 11 3pUTR, ncRNA CDCA3 Medium_conserved miR-543 chr12:6958329 7-mer-A1 36 3pUTR, CDS, ncRNA CDCA3 Medium_conserved miR-134/3118 chr12:6958177 7-mer-m8 9 3pUTR, ncRNA CDCA3 Medium_conserved miR-134/3118 chr12:6960087 8-mer 33 CDS, ncRNA CDCA3 Medium_conserved miR-134/3118 chr12:6960574 7-mer-m8 13 5pUTR CDCA3 Medium_conserved miR-874 chr12:6960470 7-mer-m8 16 5pUTR CDCA3 Medium_conserved miR-875-5p chr12:6957990 7-mer-A1 13 3pUTR CDCA3 Medium_conserved miR-149 chr12:6958774 7-mer-A1 27 CDS, ncRNA CDCA3 Medium_conserved miR-185/882/3473/4306/4644 chr12:6959746 7-mer-A1 40 CDS, ncRNA CDCA3 Medium_conserved miR-197 chr12:6959001 7-mer-A1 51 CDS, ncRNA CDCA3 Medium_conserved miR-28-5p/708/1407/1653/3139 chr12:6961144 7-mer-A1 20 5pUTR CDCA3 Medium_conserved miR-290-5p/292-5p/371-5p/293 chr12:6959925 7-mer-A1 13 ncRNA CDCA3 Medium_conserved miR-320abcd/4429 chr12:6958066 8-mer 16 3pUTR, ncRNA CDCA3 Medium_conserved miR-326/330/330-5p chr12:6958927 7-mer-m8 7 CDS, ncRNA CDCA3 Medium_conserved miR-326/330/330-5p chr12:6958945 7-mer-m8 40 CDS, ncRNA CDCA3 Medium_conserved miR-339b/339-5p/3586-5p chr12:6958360 7-mer-m8 44 CDS, ncRNA CDCA3 Medium_conserved miR-339b/339-5p/3586-5p chr12:6960237 7-mer-m8 4 5pUTR CDCA3 Medium_conserved miR-370 chr12:6959725 7-mer-m8 29 CDS, ncRNA CDCA3 Medium_conserved miR-370 chr12:6960338 7-mer-m8 13 5pUTR CDCA3 Medium_conserved miR-370 chr12:6960984 7-mer-A1 16 5pUTR CDCA3 Medium_conserved miR-376abd/376b-3p chr12:6959645 7-mer-A1 49 CDS, ncRNA CDCA3 Medium_conserved miR-421 chr12:6958874 7-mer-m8 7 CDS, ncRNA CDCA3 Medium_conserved miR-431 chr12:6958803 8-mer 18 CDS, ncRNA

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score CDCA3 RAID00205532 hsa-miR-4292 miRNA MIMAT0016919 CDCA3 mRNA 83461 PAR-CLIP//Prediction 0.6308 CDCA3 RAID00290007 hsa-miR-186-5p miRNA MIMAT0000456 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID00390255 hsa-miR-320d miRNA MIMAT0006764 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID00447327 hsa-miR-3153 miRNA MIMAT0015026 CDCA3 mRNA 83461 PAR-CLIP//Prediction 0.6308 CDCA3 RAID00583998 hsa-miR-6782-5p miRNA MIMAT0027464 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00626952 hsa-miR-144-5p miRNA MIMAT0004600 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00651410 hsa-miR-3936 miRNA MIMAT0018351 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00712563 hsa-miR-4308 miRNA MIMAT0016861 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00755399 hsa-miR-362-3p miRNA MIMAT0004683 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID00816293 hsa-miR-4646-5p miRNA MIMAT0019707 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00873058 hsa-miR-4733-3p miRNA MIMAT0019858 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID00997466 hsa-miR-410-3p miRNA MIMAT0002171 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID01103336 hsa-miR-875-5p miRNA MIMAT0004922 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID01150112 hsa-miR-7160-5p miRNA MIMAT0028230 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID01212842 hsa-miR-320b miRNA MIMAT0005792 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID01462014 hsa-miR-708-5p miRNA MIMAT0004926 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID01554363 hsa-miR-1197 miRNA MIMAT0005955 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID01654754 hsa-miR-3179 miRNA MIMAT0015056 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID01880763 hsa-miR-26b-5p miRNA MIMAT0000083 CDCA3 mRNA 83461 Microarray 0.5483 CDCA3 RAID01887429 hsa-miR-6791-5p miRNA MIMAT0027482 CDCA3 mRNA 83461 PAR-CLIP//Prediction 0.6308 CDCA3 RAID01969132 hsa-miR-6733-5p miRNA MIMAT0027367 CDCA3 mRNA 83461 PAR-CLIP//Prediction 0.6308 CDCA3 RAID01984577 hsa-miR-1226-3p miRNA MIMAT0005577 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID02229704 hsa-miR-6866-3p miRNA MIMAT0027633 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID02283096 hsa-miR-543 miRNA MIMAT0004954 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID02304422 hsa-miR-377-3p miRNA MIMAT0000730 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID02380213 hsa-miR-5004-5p miRNA MIMAT0021027 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID02459923 hsa-miR-320c miRNA MIMAT0005793 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID02519759 hsa-miR-8485 miRNA MIMAT0033692 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID02588686 hsa-miR-3154 miRNA MIMAT0015028 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID02658306 hsa-miR-188-5p miRNA MIMAT0000457 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID02671048 hsa-miR-6739-5p miRNA MIMAT0027379 CDCA3 mRNA 83461 PAR-CLIP//Prediction 0.6308 CDCA3 RAID02747934 hsa-miR-33b-5p miRNA MIMAT0003301 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID02794631 hsa-miR-33a-5p miRNA MIMAT0000091 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID02851072 hsa-miR-194-5p miRNA MIMAT0000460 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID02941858 hsa-let-7e-5p miRNA MIMAT0000066 CDCA3 mRNA 83461 CLASH 0.5483 CDCA3 RAID03286068 hsa-miR-340-5p miRNA MIMAT0004692 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID03536923 hsa-miR-329-3p miRNA MIMAT0001629 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID03577061 hsa-miR-320a miRNA MIMAT0000510 CDCA3 mRNA 83461 CLIP-seq//CLASH//Prediction 0.7226 CDCA3 RAID03711009 hsa-miR-204-3p miRNA MIMAT0022693 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID03740686 hsa-miR-93-5p miRNA MIMAT0000093 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID03788271 hsa-miR-520e miRNA MIMAT0002825 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID03885419 hsa-miR-5195-3p miRNA MIMAT0021127 CDCA3 mRNA 83461 Prediction 0.1828 CDCA3 RAID03909634 hsa-miR-494-3p miRNA MIMAT0002816 CDCA3 mRNA 83461 CLIP-seq//Prediction 0.6308 CDCA3 RAID04007643 hsa-miR-4668-5p miRNA MIMAT0019745 CDCA3 mRNA 83461 PAR-CLIP 0.5483 CDCA3 RAID04660202 TUG1 lncRNA 55000 CDCA3 protein 83461 Microarray//RNA-seq 0.6606 CDCA3 RAID04689784 MALAT1 lncRNA 378938 CDCA3 protein 83461 Microarray//RNA-seq 0.6606