iUUCD 2.0 - integrated annotations for ubiquitin and ubiquitin-like conjugation database

PPI - IID
Symbol 1	Symbol 2	PMID	DBs	Evidence Type	Adipose Tissue	Adrenal Gland	Amygdala	Bone	Bone Marrow	Brain	Dorsal Root Ganglia	Eye	Heart	Hindgut	Hypothalamus	Kidney	Liver	Lung	Lymph Nodes	Mammary Gland	Midgut	Neurons	Ovary	Pancreas	Pituitary Gland	Placenta	Prostate	Salivary Gland	Skeletal Muscle	Small Intestine	Spleen	Stomach	Testes	Uterus
KLHL18	CUL5	21145461	biogrid	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	PCMT1	26186194	biogrid	exp	G	GP	G	G	GP	GP	G		GP	G	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	COPS4	19295130	biogrid	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	NEDD8	21145461	innatedb	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	EEF1G	25416956,21516116	biogrid,mint,intact	exp		P				P				P				P			P	P		P				P		P		P	P
KLHL18	SUGT1	26186194	biogrid	exp	G	G	G	G	G	G	G		GP	GP	G	GP	G	G	G	G	GP	G	G	GP	G	G		G	GP	GP	G	GP	GP	G
KLHL18	GPSM1	26186194	biogrid	exp	G	GP	G	G	G	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		G	GP	GP	G	GP	GP	G
KLHL18	COPS6	19615732,21145461	biogrid,intact	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	G	GP	G	G	GP	GP	G	GP	G	G		GP	G	GP	G	GP	GP	G
KLHL18	SMAP1	26186194	biogrid	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	COPS5	19615732,21145461	biogrid,intact	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	DCUN1D1	21145461	biogrid	exp		P	G	G	G	GP	G		P	P	G	P	P	P			P	GP	G	GP	G	G		P	GP	GP		P	GP	G
KLHL18	COPS3	19295130	biogrid	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	NUDCD3	26186194	biogrid	exp	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	CUL3	19295130,21145461	biogrid	exp, ortho	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	KLHL18			ortho	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
DHX16	KLHL18			ortho	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	PPIL4			ortho	G	GP	G	G	G	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	G	GP	G	GP	GP	G
KLHL18	BTBD9	23023127		pred		G	G	G	GP	GP	G		G	GP	G	G	G	GP	G	G	G	GP		GP	G			GP	G	G	G	GP	GP	G
BACH1	KLHL18	23023127		pred	G	GP	G	G	GP	GP	G		G	GP	G	GP	G	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	KLHL3	23023127		pred	G	GP	G	G	G	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
ENC1	KLHL18	23023127		pred	G	GP	G	G	G	GP	G		GP	GP	G	GP	G	GP	G	G	GP	GP	G	GP	G	G		GP	G	GP	G	GP	GP	G
SOCS3	KLHL18	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	VHL	23023127		pred	G	G	G	G	G	G	G		G	G	G	GP	GP	GP	G	G	G	G	G	P	G	G		GP	G	G	G	G	GP	G
KLHL18	KLHL1	23023127		pred		P				G			P		G	P	P					G		P				P	P			P	P
KBTBD11	KLHL18	23023127		pred	G	GP	G	G	GP	GP	G		P	GP	G	GP	GP	GP	G	G	GP	GP		P	G			P	GP	GP	G	P	P	G
KLHL18	KLHL38	23023127		pred		P			P	P			P	P		P		P			P	P		P				P	P	P		P	P
KLHL18	BTBD6	23023127		pred	G	G	G	G	GP	G	G		G	GP	G	G	G	G	G	G	GP	G	G	G	G	G		G	GP	GP	G	G	G	G
KLHL18	KLHL2	23023127		pred	G	G	G	G	G	G	G		G	G	G	GP	GP	G	G	G	GP	G	G	G	G	G		G	G	GP	G	G	GP	G
KLHL18	KCNA1	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	P	GP	P		G	GP	GP	G	GP	G	G		GP	GP	GP		GP	GP	G
KLHL18	KLHL4	23023127		pred		GP	G		P	GP				P	G	P	P	P	G		P	GP	G						P	P		P	P
KLHL18	KLHL34	23023127		pred		P			P	GP			GP	P		P	P	P			GP	GP		P				P	GP	GP		P	P
KLHL18	KLHL26	23023127		pred	G	P	G		P	GP	G		P	GP	G	GP	P	P	G	G	GP	GP		GP	G			GP	GP	GP		GP	GP	G
KLHL18	BCL6	23023127		pred	G	G	G	G	GP	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G
SOCS2	KLHL18	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	SOCS4	23023127		pred	G	GP	G	G	GP	GP	G		G	GP	G	GP	G	GP	G	G	GP	GP	G	G	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	KCNA2	23023127		pred	G		G			GP	G		G	P	G	P	P	P		G	GP	GP		P	G			P	G	P		GP	P
KLHL18	TCEB2	23023127		pred	G	G	G	G	G	G	G		G	G	G	G	G	G	G	G	G	G	G	G	G	G		G	G	G	G	G	G	G
KLHL18	ZBTB7A	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	BTBD3	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	G	GP	G	GP	GP	G
KLHL18	UBQLN1	23023127		pred	G	GP	G	G	GP	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G
KLHL18	ZBTB17	23023127		pred	G	GP	G	G	G	GP	G		GP	GP	G	GP	GP	GP	G	G	GP	GP	G	GP	G	G		GP	GP	GP	G	GP	GP	G

PPI - PINA
Gene A	Gene B	Method	Publications	Species A	Species B	Interaction Type	Source Database	Interaction Identidiers	Experimental Role(s) Interactor A	Experimental Role(s) Interactor B
KLHL18	COPS6	MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)	19615732,21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)\|MI:0915(physical association)	(biogrid)\|(biogrid)	BIOGRID_120304\|BIOGRID_205723	prey\|prey	bait\|bait
KLHL18	CUL3	MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)	19295130,21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)\|MI:0915(physical association)	(biogrid)\|(biogrid)	BIOGRID_221279\|BIOGRID_201913	prey\|prey	bait\|bait
KLHL18	EEF1G	MI:0018(two hybrid)	21516116	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(intact)	UniProt_114638	bait	prey
KLHL18	COPS5	MI:0007(anti tag coimmunoprecipitation)\|MI:0004(affinity chromatography technology)\|MI:0004(affinity chromatography technology)	19615732,21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)\|MI:0915(physical association)\|MI:0915(physical association)	(intact)\|(biogrid)\|(biogrid)	UniProt_100632\|BIOGRID_120303\|BIOGRID_205311	prey\|prey\|prey	bait\|bait\|bait
KLHL18	CUL5	MI:0004(affinity chromatography technology)	21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(biogrid)	BIOGRID_203498	prey	bait
KLHL18	COPS4	MI:0004(affinity chromatography technology)	19295130	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(biogrid)	BIOGRID_221772	prey	bait
KLHL18	DCUN1D1	MI:0004(affinity chromatography technology)	21145461	taxid:9606(Homo sapiens)	taxid:9606(Homo sapiens)	MI:0915(physical association)	(biogrid)	BIOGRID_205991	prey	bait

PPI - HINT
Gene A	Gene B	PMID	Method	Quality
KLHL18	PCMT1	26186194	0004	HT
KLHL18	CUL3	21145461,19295130	0004,0004	HT,LC
KLHL18	COPS6	19615732,21145461,19615732	0004,0004,0007	HT
KLHL18	GPSM1	26186194	0004	HT
KLHL18	NUDCD3	26186194	0004	HT
KLHL18	SMAP1	26186194	0004	HT
KLHL18	COPS5	19615732,21145461,19615732	0004,0004,0007	HT
KLHL18	CUL5	21145461	0004	HT
KLHL18	DCUN1D1	21145461	0004	HT
KLHL18	SUGT1	26186194	0004	HT
KLHL18	PCMT1	26186194	0004	HT
KLHL18	CUL3	21145461	0004	HT
KLHL18	COPS6	19615732,21145461,19615732	0004,0004,0007	HT
KLHL18	GPSM1	26186194	0004	HT
KLHL18	NUDCD3	26186194	0004	HT
KLHL18	SMAP1	26186194	0004	HT
KLHL18	COPS5	19615732,21145461,19615732	0004,0004,0007	HT
KLHL18	CUL5	21145461	0004	HT
KLHL18	DCUN1D1	21145461	0004	HT
KLHL18	SUGT1	26186194	0004	HT
KLHL18	CUL3	19295130	0004	LC
KLHL18	EEF1G	21516116,25416956,25416956,25416956,25416956	0018,1112,0397,0018,1356	HT

PPI - InWeb_IM
Gene A	Gene B	MI 1	Interaction 1	MI 2	Interaction 2
DHX16	KLHL18	MI:0362	inference	MI:0461	interaction database
KLHL18	PCMT1	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	EEF1G	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	HNF4A	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	CUL3	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	COPS6	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	GPSM1	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	NUDCD3	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	SMAP1	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	PPIL4	MI:0362	inference	MI:0461	interaction database
KLHL18	COPS5	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	GPKOW	MI:0362	inference	MI:0461	interaction database
KLHL18	CUL5	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	DCUN1D1	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	COPS4	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	COPS3	MI:0045	experimental interaction detection	MI:0461	interaction database
KLHL18	SUGT1	MI:0045	experimental interaction detection	MI:0461	interaction database