DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome UCHL3 3'UTR baa9d7e3c7 BA116576 NM_006002 chr13:75077950-75078065:+ UCHL3 3'UTR 84dadc0732 BA116577 NM_006002 chr13:75077950-75078270:+ UCHL3 3'UTR dac0817edb BA116578 NM_006002 chr13:75077950-75078270:+ UCHL3 3'UTR 2518cb5792 BA116579 NM_006002 chr13:75077950-75078270:+ UCHL3 3'UTR f7b7779e48 BA116580 NM_006002 chr13:75077950-75078070:+ UCHL3 3'UTR 0586c4c1b8 BA116581 NM_006002 chr13:75077950-75078270:+ UCHL3 3'UTR 913154cbf4 BA116582 NM_006002 chr13:75077910-75078270:+ UCHL3 3'UTR 7115afeebd BA116583 NM_006002 chr13:75077950-75078270:+ UCHL3 3'UTR bd3268531f BA116584 NM_006002 chr13:75077950-75078070:+ UCHL3 3'UTR 29d82fc5d1 BA116585 NM_006002 chr13:75077910-75078270:+ UCHL3 3'UTR 4af44e91c5 BA116586 NM_006002 chr13:75077910-75078270:+ UCHL3 3'UTR 99e3c57cf9 BA116587 NM_006002 chr13:75039474-75039508:+ UCHL3 3'UTR ad4496bfcb BA116588 NM_006002 chr13:75039474-75039508:+ UCHL3 5'UTR baa9d7e3c7 CA183020 NM_006002 chr13:75021928-75021957:+ UCHL3 5'UTR 84dadc0732 CA183021 NM_006002 chr13:75021622-75032943:+ UCHL3 5'UTR dac0817edb CA183022 NM_006002 chr13:75021887-75021957:+ UCHL3 5'UTR 2518cb5792 CA183023 NM_006002 chr13:75021622-75032943:+ UCHL3 5'UTR f7b7779e48 CA183024 NM_006002 chr13:75021622-75032943:+ UCHL3 5'UTR 0586c4c1b8 CA183025 NM_006002 chr13:75021932-75021957:+ UCHL3 5'UTR 913154cbf4 CA183026 NM_006002 chr13:75021622-75032943:+ UCHL3 5'UTR 7115afeebd CA183027 NM_006002 chr13:75021932-75021957:+ UCHL3 5'UTR bd3268531f CA183028 NM_006002 chr13:75021932-75021957:+ UCHL3 5'UTR 29d82fc5d1 CA183029 NM_006002 chr13:75021887-75021957:+ UCHL3 5'UTR 4af44e91c5 CA183030 NM_006002 chr13:75021932-75021957:+ UCHL3 5'UTR 99e3c57cf9 CA183031 NM_006002 chr13:75021622-75032943:+ UCHL3 5'UTR ad4496bfcb CA183032 NM_006002 chr13:75021887-75021957:+

DNA & RNA Element - circBase circRNA ID Chrom Start End Strand hsa_circ_0030434 chr13 76140830 76180068 + hsa_circ_0003455 chr13 76134888 76169126 + hsa_circ_0030438 chr13 76178904 76180068 + hsa_circ_0030432 chr13 76124111 76180068 + hsa_circ_0030433 chr13 76134888 76180068 + hsa_circ_0030436 chr13 76143595 76180068 + hsa_circ_0030437 chr13 76169050 76180068 + hsa_circ_0000494 chr13 76134888 76143643 + hsa_circ_0030435 chr13 76141362 76180068 +

DNA & RNA Element - circRNADb circRNA ID Chrom Start End Strand Samples hsa_circ_02575 chr13 76134888 76169126 + normal brain tissue,Hs68 hsa_circ_20314 chr13 76134888 76143643 + H9 hESCs,normal brain tissue,glioblastoma,oligodendroma,HEK293,cd_19,Hs68

DNA & RNA Element - CircNet Circ ID GITPosition Express Symbol Entrez Category Strand Refered Name hsa-circ-UCHL3-overlap.1 NM_001270952Tchr13:76134888-76143632 expressed UCHL3 7347 protein-coding + not_available hsa-circ-UCHL3-overlap.2 NM_006002Tchr13:76123931-76124111 expressed UCHL3 7347 protein-coding + not_available hsa-circ-UCHL3-overlap.6 NM_006002Tchr13:76134888-76164265 expressed UCHL3 7347 protein-coding + hsa_circ_0100859 hsa-circ-UCHL3-overlap.9 NM_001270952Tchr13:76134888-76196004 expressed UCHL3 7347 protein-coding + hsa_circ_0100860 hsa-circ-UCHL3.1 NM_001270952Tchr13:76140830-76143643 expressed UCHL3 7347 protein-coding + hsa_circ_0100862 hsa-circ-UCHL3.10 NM_001270952Tchr13:76134888-76169126 none UCHL3 7347 protein-coding + hsa_circ_0003455 hsa-circ-UCHL3.12 NM_006002Tchr13:76134888-76141448 expressed UCHL3 7347 protein-coding + hsa_circ_0100858 hsa-circ-UCHL3.13 NM_001270952Tchr13:76143595-76169126 expressed UCHL3 7347 protein-coding x chr13:76143595-76169126_HeLa_S3_poly(A)- hsa-circ-UCHL3.8 NM_001270952Tchr13:76134888-76143643 expressed UCHL3 7347 protein-coding + hsa_circ_0000494

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT019702 hsa-miR-375 Homo sapiens UCHL3 7347 Homo sapiens Microarray Functional MTI (Weak) 20215506 MIRT047087 hsa-miR-183-5p Homo sapiens UCHL3 7347 Homo sapiens CLASH Functional MTI (Weak) 23622248 MIRT520273 hsa-miR-190a-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520273 hsa-miR-190a-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520274 hsa-miR-3941 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520274 hsa-miR-3941 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520275 hsa-miR-3144-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520275 hsa-miR-3144-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520276 hsa-miR-5011-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520276 hsa-miR-5011-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520277 hsa-miR-875-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520277 hsa-miR-875-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520278 hsa-miR-5580-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520278 hsa-miR-5580-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520279 hsa-miR-4789-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520279 hsa-miR-4789-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520280 hsa-miR-603 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520280 hsa-miR-603 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520281 hsa-miR-362-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520281 hsa-miR-362-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520282 hsa-miR-329-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520282 hsa-miR-329-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT520283 hsa-miR-8485 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 21572407 MIRT520283 hsa-miR-8485 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 23446348 MIRT528088 hsa-miR-7156-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528089 hsa-miR-4273 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528090 hsa-miR-514b-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528091 hsa-miR-513c-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528092 hsa-miR-2117 Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528093 hsa-miR-372-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528094 hsa-miR-371a-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528095 hsa-miR-616-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528096 hsa-miR-373-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528097 hsa-miR-371b-5p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528098 hsa-miR-548p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT528099 hsa-miR-6507-3p Homo sapiens UCHL3 7347 Homo sapiens PAR-CLIP Functional MTI (Weak) 22012620 MIRT709706 hsa-miR-606 Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717164 hsa-miR-4633-5p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717165 hsa-miR-5093 Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717166 hsa-miR-6781-3p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717167 hsa-miR-2682-3p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717168 hsa-miR-3134 Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717169 hsa-miR-4534 Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717170 hsa-miR-8082 Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717171 hsa-miR-3124-3p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717172 hsa-miR-130b-5p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717173 hsa-miR-3688-3p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157 MIRT717174 hsa-miR-532-5p Homo sapiens UCHL3 7347 Homo sapiens HITS-CLIP Functional MTI (Weak) 19536157

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004483 hsa-let-7c* 7347 UCHL3 auuGAGGGUCCCACAUUGAGau || ||| |||||| ucuCUGCCAUACACUAACUCaa 3 20 50 71 [hg19:13:76179998-76180019:+] 0.7245 127 0 -11.44 -0.5800 MIMAT0004487 hsa-let-7f-2* 7347 UCHL3 ccUUUCUGUCAUCUGACAUAuc ||| || | ||||||| ggAAACACCAAAAACUGUAUua 3 21 13 34 [hg19:13:76179961-76179982:+] 0.7498 140 0 -12.60 -0.5839 MIMAT0004498 hsa-miR-25* 7347 UCHL3 guuAACG--GGUU---CAGAGGCGGa |||| |:|| ||||:||| uauUUGCAACUAAAUUUUCUCUGCCa 2 19 33 58 [hg19:13:76179981-76180006:+] 0.7371 132 0 -15.45 -0.3914 MIMAT0000088 hsa-miR-30a* 7347 UCHL3 cgAC-GUUUGUAGGCUGACUUUc || || ||| |: ||| ||| ucUGCCAUACA-CUAACUCAAAa 2 21 52 73 [hg19:13:76180000-76180021:+] 0.7245 125 0 -10.83 -0.3052 MIMAT0004505 hsa-miR-32* 7347 UCHL3 uuUAUAGUGUGUG-UGAUUUAAc :|||:|: ::| |||||||| cuGUAUUAUUUGCAACUAAAUUu 2 21 27 49 [hg19:13:76179975-76179997:+] 0.7371 163 7 -11.45 -1.2875 MIMAT0004510 hsa-miR-96* 7347 UCHL3 guAUAACCGUGACGUGUACUAa |||| ||:| || |||| gaUAUUUUCAUU-AACUUGAUg 2 21 79 99 [hg19:13:76180027-76180047:+] 0.7245 126 0 -8.01 -0.2767 MIMAT0004551 hsa-miR-30d* 7347 UCHL3 cgucGUUUGUAGACUGACUUUc || ||| || ||| ||| cugcCAUACA-CUAACUCAAAa 2 19 53 73 [hg19:13:76180001-76180021:+] 0.7245 128 0 -5.63 -0.3052 MIMAT0000251 hsa-miR-147 7347 UCHL3 cgucuucguaAAGGUGUGUg | |||:||| aaauuuucucUGCCAUACAc 2 11 44 63 [hg19:13:76179992-76180011:+] 0.7245 126 0 -13.39 -0.1156 MIMAT0004557 hsa-miR-34a* 7347 UCHL3 ucccGUCAUAUGAACGACUAAc || || ||||| ||||| uuuuCAUUA-ACUUGAUGAUUa 2 19 83 103 [hg19:13:76180031-76180051:+] 0.7245 136 0 -9.26 -0.2701 MIMAT0004560 hsa-miR-183* 7347 UCHL3 aauacCGGGAAGCCAUUAAGUg ||| | | ||| ||| ucucuGCCAUACACUAACUCAa 2 18 50 71 [hg19:13:76179998-76180019:+] 0.7245 121 0 -5.54 -0.2259 MIMAT0004570 hsa-miR-223* 7347 UCHL3 uugagucgaacaguuUAUGUGc |||||| uaaauuuucucugccAUACACu 2 8 43 64 [hg19:13:76179991-76180012:+] 0.7245 120 6 -7.94 -0.2699 MIMAT0004586 hsa-miR-15b* 7347 UCHL3 aucucGUCGUU-UAUUACUAAgc || :|| |:|||||| auuuuCAUUAACUUGAUGAUUaa 3 18 82 104 [hg19:13:76180030-76180052:+] 0.7245 132 0 -7.38 -0.4148 MIMAT0004593 hsa-miR-130a* 7347 UCHL3 cgucugucaucguguUACACUu |||||| ugaugauuaaacuuuAUGUGAg 2 8 95 116 [hg19:13:76180043-76180064:+] 0.7245 120 6 -10.39 -0.4716 MIMAT0000433 hsa-miR-142-5p 7347 UCHL3 ucAUCACGAAAGAUGAAAUAc |: || || ||||||| cuUGAUG-AUUAAACUUUAUg 2 20 93 112 [hg19:13:76180041-76180060:+] 0.7245 145 7 -10.17 -1.2926 MIMAT0004600 hsa-miR-144* 7347 UCHL3 gaaugucaUAUACUACUAUAGg | || ||||||: uaacucaaAAAUUUUGAUAUUu 2 15 64 85 [hg19:13:76180012-76180033:+] 0.7245 130 0 -5.62 -0.3860 MIMAT0000444 hsa-miR-126* 7347 UCHL3 gcgcaugguuuucaUUAUUAc |||||| --------cuugucAAUAAUg 2 8 1 13 [hg19:13:76179949-76179961:+] 0.7875 120 6 -5.26 -0.2039 MIMAT0004606 hsa-miR-136* 7347 UCHL3 ucuGAGUAAACUCUGCUACUAc :||| || | :|||||| auuUUCA-UUAACUUGAUGAUu 2 20 82 102 [hg19:13:76180030-76180050:+] 0.7245 137 6 -11.75 -0.3616 MIMAT0000721 hsa-miR-369-3p 7347 UCHL3 uuUCUAGUUGGU-ACAUAAUAa | | ||| | |||||||| aaACACCAAAAACUGUAUUAUu 2 20 15 36 [hg19:13:76179963-76179984:+] 0.7498 154 7 -10.85 -1.3198 MIMAT0000725 hsa-miR-373* 7347 UCHL3 ccuuucgcgggggUAAAACUca ||||||| cacuaacucaaaaAUUUUGAua 3 10 61 82 [hg19:13:76180009-76180030:+] 0.7245 125 0 -7.74 -0.7773 MIMAT0004700 hsa-miR-331-5p 7347 UCHL3 ccuAGGGACCCUGGUAUG-GAUc ||:||| |||||| ||| uuuUCUCUG---CCAUACACUAa 2 20 47 66 [hg19:13:76179995-76180014:+] 0.7245 123 0 -16.58 -1.2895 MIMAT0005457 hsa-miR-518a-5p 7347 UCHL3 cuuucccgaagggAAACGUc |||||| aaaaacuguauuaUUUGCAa 2 8 22 41 [hg19:13:76179970-76179989:+] 0.7371 120 6 -6.80 -0.5151 MIMAT0002862 hsa-miR-527 7347 UCHL3 cuuucccgaagggAAACGUc |||||| aaaaacuguauuaUUUGCAa 2 8 22 41 [hg19:13:76179970-76179989:+] 0.7371 120 6 -6.80 -0.5151 MIMAT0004777 hsa-miR-513a-3p 7347 UCHL3 ggaaGAGUCUUU-CCACUUUAAAu |||| ||| ||| |||| cuaaCUCAAAAAUUUUGAUAUUUu 2 20 63 86 [hg19:13:76180011-76180034:+] 0.7245 130 0 -7.88 -0.1427 MIMAT0004777 hsa-miR-513a-3p 7347 UCHL3 ggaagagucuuuccacUUUAAAu |||||| uguauuauuugcaacuAAAUUUu 2 8 28 50 [hg19:13:76179976-76179998:+] 0.7371 120 6 -5.95 -0.1264 MIMAT0002883 hsa-miR-514 7347 UCHL3 agaugagugucuucACAGUUa |||||| ------------cuUGUCAAu 2 8 1 9 [hg19:13:76179949-76179957:+] 0.8253 120 6 -7.79 -0.1898 MIMAT0003225 hsa-miR-561 7347 UCHL3 ugaAGUUCCUAGAAUUUGAAAc |::| || ||||||||| aacUUGAUGA--UUAAACUUUa 2 20 91 110 [hg19:13:76180039-76180058:+] 0.7245 156 7 -9.37 -1.2936 MIMAT0003225 hsa-miR-561 7347 UCHL3 ugaaguuccuAGAAUUUGAAAc || |||:||| auacacuaacUCAAAAAUUUUg 2 13 58 79 [hg19:13:76180006-76180027:+] 0.7245 128 0 -7.02 -0.1840 MIMAT0003234 hsa-miR-569 7347 UCHL3 ugaaagguccuAAGUAAUUGa ||||||||| auuuugauauuUUCAUUAACu 2 11 74 94 [hg19:13:76180022-76180042:+] 0.7245 150 7 -11.10 -1.3283 MIMAT0003234 hsa-miR-569 7347 UCHL3 ugAAAGGUCCUAAGUAAUUGa | ||:: || || |||| uuUCUCUGCCAUACACUAACu 2 20 48 68 [hg19:13:76179996-76180016:+] 0.7245 123 0 -6.93 -0.1363 MIMAT0003235 hsa-miR-570 7347 UCHL3 cgUUUCCAUUAACGACAAAAGc ||| | ||| | ||||| ucAAAAAU-UUUGAUAUUUUCa 2 21 68 88 [hg19:13:76180016-76180036:+] 0.7245 122 0 -5.27 -0.2071 MIMAT0003236 hsa-miR-571 7347 UCHL3 gagugagucuaccGGUUGAGu |:||||| ucucugccauacaCUAACUCa 2 9 50 70 [hg19:13:76179998-76180018:+] 0.7245 124 0 -14.64 -0.2712 MIMAT0003245 hsa-miR-580 7347 UCHL3 ggaUUACUAAGUAGUAAGAGUu ||| ||:: :|||:||| aaaAAU--UUUGAUAUUUUCAu 2 20 70 89 [hg19:13:76180018-76180037:+] 0.7245 136 0 -6.30 -0.1325 MIMAT0003247 hsa-miR-582-5p 7347 UCHL3 ucauugaccaacUUGUUGACAUu || ||||||| aauggaaacaccAAAAACUGUAu 2 12 10 32 [hg19:13:76179958-76179980:+] 0.7875 147 7 -9.74 -1.3347 MIMAT0003253 hsa-miR-587 7347 UCHL3 cacuGAGUAGUGGAUACCUUu ||::||| : |||||| ----CUUGUCAAUAAUGGAAa 2 18 1 17 [hg19:13:76179949-76179965:+] 0.7875 133 6 -12.90 -0.5878 MIMAT0003277 hsa-miR-609 7347 UCHL3 ucucUACUCUCUUUGUGGga || | :|||||||| gucaAUAAUGGAAACACCaa 3 17 4 23 [hg19:13:76179952-76179971:+] 0.7875 140 0 -12.65 -0.6414 MIMAT0003284 hsa-miR-616* 7347 UCHL3 uucAGUGACUUCCCAAAACUca | ||| || |||||| cacUAACUCAAAAAUUUUGAua 3 20 61 82 [hg19:13:76180009-76180030:+] 0.7245 135 0 -3.15 -0.7626 MIMAT0003285 hsa-miR-548c-3p 7347 UCHL3 cguUUUCAUUAACUCUAAAAAc ||| |||| ||| ||| cucAAA--AAUUUUGAUAUUUu 2 20 67 86 [hg19:13:76180015-76180034:+] 0.7245 124 0 -6.67 -0.1304 MIMAT0003314 hsa-miR-644 7347 UCHL3 cgagauucuuuCGGUGUGa ||||:|| aaauuuucucuGCCAUACa 2 9 44 62 [hg19:13:76179992-76180010:+] 0.7245 124 0 -12.74 -0.1287 MIMAT0003331 hsa-miR-655 7347 UCHL3 uuucuccaaUUGGUACAUAAUa || | ||||||| aaacaccaaAAAC-UGUAUUAu 2 14 15 35 [hg19:13:76179963-76179983:+] 0.7498 143 7 -9.24 -1.3056 MIMAT0006790 hsa-miR-675* 7347 UCHL3 acucgccacucccGUAUGUc |||||| aaauuuucucugcCAUACAc 2 8 44 63 [hg19:13:76179992-76180011:+] 0.7245 120 6 -4.90 -0.3972 MIMAT0004909 hsa-miR-450b-5p 7347 UCHL3 auaaGUCCUUGUAUAACGUUuu | | | :|| |||||| aaaaCUGUAUUAU-UUGCAAcu 3 19 23 43 [hg19:13:76179971-76179991:+] 0.7371 128 0 -4.48 -0.4546 MIMAT0004921 hsa-miR-889 7347 UCHL3 uguuaccaacAGGCUAUAAuu |::|||||| acucaaaaauUUUGAUAUUuu 3 12 66 86 [hg19:13:76180014-76180034:+] 0.7245 127 0 -6.45 -0.3884 MIMAT0004946 hsa-miR-744* 7347 UCHL3 uccAACUCCAAUCACCGUUGUc ||| || ||| |||| --cUUGUCAAUAAUGGAAACAc 2 20 1 20 [hg19:13:76179949-76179968:+] 0.7875 123 0 -5.46 -0.1125 MIMAT0004947 hsa-miR-885-5p 7347 UCHL3 ucuccgucccaucacAUUACCu |||||| -------cuugucaaUAAUGGa 2 8 1 15 [hg19:13:76179949-76179963:+] 0.7875 120 6 -7.62 -0.2447 MIMAT0004948 hsa-miR-885-3p 7347 UCHL3 auaGGUGAUGU-GGGGCGACGGa | |||| | :::| ||||| uugCAACUAAAUUUUCUCUGCCa 2 20 36 58 [hg19:13:76179984-76180006:+] 0.7371 126 0 -15.47 -0.3158 MIMAT0004987 hsa-miR-944 7347 UCHL3 gaguaggcuACAUGUUAUUAaa ||| ||||||| -------cuUGU-CAAUAAUgg 3 14 1 14 [hg19:13:76179949-76179962:+] 0.7875 131 0 -5.60 -0.1280 MIMAT0004450 hsa-miR-297 7347 UCHL3 guacguguacguguGUAUGUa |||||| uaaauuuucucugcCAUACAc 2 8 43 63 [hg19:13:76179991-76180011:+] 0.7245 120 6 -7.97 -0.4033 MIMAT0005870 hsa-miR-1206 7347 UCHL3 cgAAUUUGUAGAUGUACUUGu || :|:||:| ||| ||| auUUUGAUAUUUUCAUUAACu 2 20 74 94 [hg19:13:76180022-76180042:+] 0.7245 135 0 -8.25 -0.1323 MIMAT0005871 hsa-miR-1207-5p 7347 UCHL3 ggggagggUCGGAGGGACGGu | ::||:||||| gcaacuaaAUUUUCUCUGCCa 2 14 38 58 [hg19:13:76179986-76180006:+] 0.7245 133 0 -21.10 -0.3074 MIMAT0005889 hsa-miR-548l 7347 UCHL3 cuGUUUUGGGCGUUUAUGAAAa ||||| :: : :|||:||| cuCAAAAAUU-UUGAUAUUUUc 2 21 67 87 [hg19:13:76180015-76180035:+] 0.7245 138 0 -6.83 -0.1232 MIMAT0009977 hsa-miR-2052 7347 UCHL3 uguaAUGACAAU-AGUUUUgu ||| | | |||||| gccaUACACUAACUCAAAAau 3 17 55 75 [hg19:13:76180003-76180023:+] 0.7245 127 0 -5.13 -0.3198 MIMAT0009978 hsa-miR-2053 7347 UCHL3 cauuuaucuccAAAUUAAUUGug ||| |||||| aauuuugauauUUUCAUUAACuu 3 13 73 95 [hg19:13:76180021-76180043:+] 0.7245 132 0 -2.48 -0.2281 MIMAT0011159 hsa-miR-2115* 7347 UCHL3 gaucggaGGUACUUAAGACUAc :|| ||||:|||| cacuaacUCAAAAAUUUUGAUa 2 16 61 82 [hg19:13:76180009-76180030:+] 0.7245 139 0 -12.43 -0.3842 MIMAT0015022 hsa-miR-3149 7347 UCHL3 uauguguguguauaGGUAUGUuu ||||||| cuaaauuuucucugCCAUACAcu 3 10 42 64 [hg19:13:76179990-76180012:+] 0.7245 125 0 -9.07 -0.2257 MIMAT0015025 hsa-miR-3152 7347 UCHL3 aauaACGGGGAUAAGAUUGUGu || || || ||||| | ucucUG-CCAUACACUAACUCa 2 19 50 70 [hg19:13:76179998-76180018:+] 0.7245 120 0 -12.27 -0.4004 MIMAT0015027 hsa-miR-3074 7347 UCHL3 gccacggaugacucGACUAUAg :|||||| cuaacucaaaaauuUUGAUAUu 2 9 63 84 [hg19:13:76180011-76180032:+] 0.7245 124 6 -5.82 -0.4983 MIMAT0015035 hsa-miR-3161 7347 UCHL3 uagacccggagacaaGAAUAGUc |||:||| ---------------CUUGUCAa 2 9 1 8 [hg19:13:76179949-76179956:+] 0.8253 124 0 -5.29 -0.1090 MIMAT0015037 hsa-miR-3163 7347 UCHL3 caGAAUGACGGGAGUAAAAUAu |||: || :: | ||||| aaCUUGAUGAUUAAACUUUAUg 2 21 91 112 [hg19:13:76180039-76180060:+] 0.7245 124 0 -7.18 -0.1026 MIMAT0015040 hsa-miR-3166 7347 UCHL3 aucCGGUCAUCCGUAACAGACGc || | || : || ||||| uuuGCAACUAAAUUUUCUCUGCc 2 21 35 57 [hg19:13:76179983-76180005:+] 0.7371 124 0 -7.32 -0.2071 MIMAT0015088 hsa-miR-514b-3p 7347 UCHL3 aggugagugucuccACAGUUa |||||| ------------cuUGUCAAu 2 8 1 9 [hg19:13:76179949-76179957:+] 0.8253 120 6 -7.36 -0.1898 MIMAT0016911 hsa-miR-4280 7347 UCHL3 cgAGACGAGUCUUGAUGUGAg |:| ||| | |||||| aaUUUUCUCUGCCAUACACUa 2 20 45 65 [hg19:13:76179993-76180013:+] 0.7245 127 6 -17.57 -0.3216 MIMAT0016912 hsa-miR-4282 7347 UCHL3 agGACCUACGUUUAAAAu :|| | :||||||| auUUGCAACUAAAUUUUc 2 17 34 51 [hg19:13:76179982-76179999:+] 0.7371 148 7 -4.89 -1.1976 MIMAT0016912 hsa-miR-4282 7347 UCHL3 aggaccuacgUUUAAAAu ||||||| acuaacucaaAAAUUUUg 2 9 62 79 [hg19:13:76180010-76180027:+] 0.7245 140 7 -4.18 -1.2959 MIMAT0016926 hsa-miR-4328 7347 UCHL3 uuaggacccUUUUGACc ||||||| gaaacaccaAAAACUGu 2 9 14 30 [hg19:13:76179962-76179978:+] 0.7498 140 7 -7.06 -1.3393 MIMAT0000062 hsa-let-7a 7347 UCHL3 uuGAUAUGUUGGAUGAUGGAGu || |:| |: |||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 128 0 -11.81 -0.3205 MIMAT0000063 hsa-let-7b 7347 UCHL3 uuGGUGUGUUGGAUGAUGGAGu |: ::| |: |||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 120 0 -16.81 -0.3205 MIMAT0000064 hsa-let-7c 7347 UCHL3 uuGGUAUGUUGGAUGAUGGAGu |: |:| |: |||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 124 0 -16.84 -0.3205 MIMAT0000065 hsa-let-7d 7347 UCHL3 uuGAUACGUUGGAUGAUGGAGa || ||| |: |||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 132 0 -11.16 -0.3152 MIMAT0000066 hsa-let-7e 7347 UCHL3 uuGAUAUGUUGGAGGAUGGAGu || |:| |: ||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 120 0 -10.47 -0.3205 MIMAT0000067 hsa-let-7f 7347 UCHL3 uuGAUAUGUUAGAUGAUGGAGu || |:| || |||| ||| uuCUCUGCCAUACACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 132 0 -12.12 -0.3178 MIMAT0000073 hsa-miR-19a 7347 UCHL3 agucaaaACGUAUCUAAACGUgu ||:|| ||||||| caaaaacUGUAU-UAUUUGCAac 3 17 21 42 [hg19:13:76179969-76179990:+] 0.7371 134 0 -10.02 -0.4695 MIMAT0000074 hsa-miR-19b 7347 UCHL3 agucaaaACGUACCUAAACGUgu ||:|| ||||||| caaaaacUGUAU-UAUUUGCAac 3 17 21 42 [hg19:13:76179969-76179990:+] 0.7371 134 0 -9.51 -0.4695 MIMAT0000078 hsa-miR-23a 7347 UCHL3 ccuuuagggaccguUACACUa |||||| gaugauuaaacuuuAUGUGAg 2 8 96 116 [hg19:13:76180044-76180064:+] 0.7245 120 6 -7.02 -0.4783 MIMAT0000082 hsa-miR-26a 7347 UCHL3 ucggAUAGGACCUAAUGAACUu |||::| | |||||| uugaUAUUUUCAUUAACUUGAu 2 19 77 98 [hg19:13:76180025-76180046:+] 0.7245 126 6 -7.91 -0.4899 MIMAT0000083 hsa-miR-26b 7347 UCHL3 uggAUAGGACUUAAUGAACUu |||::| | | |||||| ugaUAUUUUCAUUAACUUGAu 2 19 78 98 [hg19:13:76180026-76180046:+] 0.7245 134 6 -8.10 -0.4899 MIMAT0000096 hsa-miR-98 7347 UCHL3 uuguuAUGUUGAAUGAUGGAGu |:| |: |||| ||| uucucUGCCAUACACUAACUCa 2 18 49 70 [hg19:13:76179997-76180018:+] 0.7245 121 0 -9.09 -0.3205 MIMAT0000242 hsa-miR-129-5p 7347 UCHL3 cguucgggucuggcGUUUUUc |||||| aauaauggaaacacCAAAAAc 2 8 7 27 [hg19:13:76179955-76179975:+] 0.7875 120 6 -3.85 -0.2559 MIMAT0000242 hsa-miR-129-5p 7347 UCHL3 cguucgggucuggcGUUUUUc |||||| gccauacacuaacuCAAAAAu 2 8 55 75 [hg19:13:76180003-76180023:+] 0.7245 120 6 -5.62 -0.3823 MIMAT0000250 hsa-miR-139-5p 7347 UCHL3 gaCCUCUGU-GCACGUGACAUcu ||| ||| | |||||| auGGAAACACCAAAAACUGUAuu 3 21 11 33 [hg19:13:76179959-76179981:+] 0.7875 131 0 -16.39 -0.4154 MIMAT0000261 hsa-miR-183 7347 UCHL3 ucACUUAAGAUGGUCACGGUAu | ||||:| | |||||| acUAAAUUUU--CUCUGCCAUa 2 21 41 60 [hg19:13:76179989-76180008:+] 0.7245 125 6 -12.26 -0.5618 MIMAT0000414 hsa-let-7g 7347 UCHL3 uuGACAU-GUUUGAUGAUGGAGu || |: || || |||| ||| uuCUCUGCCAUAC-ACUAACUCa 2 21 49 70 [hg19:13:76179997-76180018:+] 0.7245 125 0 -14.02 -0.3205 MIMAT0000415 hsa-let-7i 7347 UCHL3 uuGUCGUGUUUGAUGAUGGAGu | || || || |||| ||| cuCUGC-CAUAC-ACUAACUCa 2 21 51 70 [hg19:13:76179999-76180018:+] 0.7245 124 0 -13.85 -0.3178 MIMAT0000418 hsa-miR-23b 7347 UCHL3 ccauuagggaccguUACACUa |||||| gaugauuaaacuuuAUGUGAg 2 8 96 116 [hg19:13:76180044-76180064:+] 0.7245 120 6 -8.47 -0.4783 MIMAT0000434 hsa-miR-142-3p 7347 UCHL3 agguauuucauccUUUGUGAUgu | |||||| aauuuucucugccAUACACUAac 3 11 45 67 [hg19:13:76179993-76180015:+] 0.7245 122 0 -9.88 -0.3429 MIMAT0000441 hsa-miR-9 7347 UCHL3 aguaugucgAUCUAU-UGGUUUcu |:|| | |||||| ugucaauaaUGGAAACACCAAAaa 3 15 3 26 [hg19:13:76179951-76179974:+] 0.7875 129 0 -8.41 -0.2986 MIMAT0000448 hsa-miR-136 7347 UCHL3 agguAGUAGUUUUGUUUACCUca |::|||| |||||| ---cUUGUCAA---UAAUGGAaa 3 20 1 17 [hg19:13:76179949-76179965:+] 0.7875 127 0 -8.58 -0.5097 MIMAT0000455 hsa-miR-185 7347 UCHL3 aguCCUUGA-CGGAAAGAGAGGu | |||| :||||||| | uuuGCAACUAAAUUUUCUCUGCc 2 20 35 57 [hg19:13:76179983-76180005:+] 0.7371 126 0 -15.97 -0.3093 MIMAT0000686 hsa-miR-34c-5p 7347 UCHL3 cguuaGUCGAUU--GAUGUGACGGa || |||| :| | ||||| auuugCAACUAAAUUUUCUCUGCCa 2 19 34 58 [hg19:13:76179982-76180006:+] 0.7371 125 0 -12.83 -0.3265 MIMAT0000688 hsa-miR-301a 7347 UCHL3 cgaaacUGUUAUGAU-AACG-UGAc || :||:|| |||| ||| ccaaaaACUGUAUUAUUUGCAACUa 2 18 20 44 [hg19:13:76179968-76179992:+] 0.7371 124 0 -9.20 -1.3452 MIMAT0000703 hsa-miR-361-5p 7347 UCHL3 cauggggaccUCUAAGACUAUu | |||:||||| acuaacucaaAAAUUUUGAUAu 2 13 62 83 [hg19:13:76180010-76180031:+] 0.7245 136 0 -10.86 -0.1451 MIMAT0000727 hsa-miR-374a 7347 UCHL3 gugaauaguccaACAUAAUAuu |||||||| aacaccaaaaacUGUAUUAUuu 3 11 16 37 [hg19:13:76179964-76179985:+] 0.7498 130 0 -8.09 -0.1320 MIMAT0000730 hsa-miR-377 7347 UCHL3 ugUUUUCAACGGAAACACACUa | :| | |||| ||||| ugAUGAUUAAACUUUAUGUGAg 2 21 95 116 [hg19:13:76180043-76180064:+] 0.7245 124 0 -8.87 -0.1186 MIMAT0004692 hsa-miR-340 7347 UCHL3 uuagucagAGUAA--CGAAAUAUu | ||| ||||||: uaacuugaUGAUUAAACUUUAUGu 2 15 90 113 [hg19:13:76180038-76180061:+] 0.7245 125 0 -5.93 -0.2543 MIMAT0000753 hsa-miR-342-3p 7347 UCHL3 ugcccacgcuaaagacACACUCu |||||| ugaugauuaaacuuuaUGUGAGu 2 8 95 117 [hg19:13:76180043-76180065:+] 0.7245 120 6 -11.96 -0.9333 MIMAT0001541 hsa-miR-449a 7347 UCHL3 ugGUCGAUUGUUAUGUGACGGu || |||| | | ||||| ugCAACUAAAUUUUCUCUGCCa 2 21 37 58 [hg19:13:76179985-76180006:+] 0.7371 128 0 -16.04 -0.3185 MIMAT0003163 hsa-miR-539 7347 UCHL3 ugugugGUUCCUAUUAAAGAGg ||| | | |||||| uauuugCAACUAAAUUUUCUCu 2 17 33 54 [hg19:13:76179981-76180002:+] 0.7371 124 6 -8.95 -0.1846 MIMAT0004801 hsa-miR-590-3p 7347 UCHL3 ugaucgaauauguaUUUUAAu |||||| cauacacuaacucaAAAAUUu 2 8 57 77 [hg19:13:76180005-76180025:+] 0.7245 120 6 -3.89 -0.2384 MIMAT0003327 hsa-miR-449b 7347 UCHL3 cgGUCGAUUGUUAUGUGACGGa || |||| | | ||||| ugCAACUAAAUUUUCUCUGCCa 2 21 37 58 [hg19:13:76179985-76180006:+] 0.7371 128 0 -13.46 -0.3185 MIMAT0004955 hsa-miR-374b 7347 UCHL3 gugaaucguccaACAUAAUAua |||||||| aacaccaaaaacUGUAUUAUuu 3 11 16 37 [hg19:13:76179964-76179985:+] 0.7498 130 0 -8.09 -0.1320 MIMAT0004958 hsa-miR-301b 7347 UCHL3 cgaaacUGUUAUAGU-AACG-UGAc || :|||:| |||| ||| ccaaaaACUGUAUUAUUUGCAACUa 2 18 20 44 [hg19:13:76179968-76179992:+] 0.7371 124 0 -8.89 -1.3452 MIMAT0005886 hsa-miR-1297 7347 UCHL3 guggacuuaaUGAACUu |||||| auuuucauuaACUUGAu 2 8 82 98 [hg19:13:76180030-76180046:+] 0.7245 120 6 -6.34 -0.4967

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G019531 UCHL3 Homo sapiens 7347

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End UCHL3 1 117 100 2830.249 + chr13 76179948 76180065 UCHL3 118 121 0.177 2830.249 + chr13 76180065 76180069 UCHL3 122 3642 0.01 2830.249 + chr13 76180069 76183590

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile UCHL3 ebv-miR-BART18-3p beg:64 end:83 pic:3' CTGCTTCGGGTTTG-AAGGCTAT 5'& |.|||| ||..|||| &5' -------CTCAAAAATTTTGATA 3' UCHL3 hsa-miR-183 beg:42 end:61 pic:3' TCACTTAAGATGGTCACGGTAT 5'& ||||.| |. ||||||| &5' ----AATTTT-CTC-TGCCATA 3' UCHL3 hsa-miR-196a beg:2 end:22 pic:3' GGGTTGTTGTACTTTGATGGAT 5'& .|||.||.. ||||| ||| &5' -TCAATAATG-GAAAC-ACC-- 3' UCHL3 hsa-miR-335star beg:1 end:18 pic:3' CCAGTCCTC-GTTATTACTTTTT 5'& | ||||||||.||| &5' --------GTCAATAATGGAAA- 3' UCHL3 hsa-miR-361-5p beg:63 end:83 pic:3' CATGGGGACCTCTAAGACTATT 5'& ||.| |||.||||| &5' --ACTCAAAA--ATTTTGATA- 3' UCHL3 hsa-miR-571 beg:54 end:71 pic:3' GAGTGAGTCTACCGGTTGAGT 5'& ||. || |.|||||| &5' --CATACA-----CTAACTCA 3' UCHL3 hsa-miR-587 beg:0 end:18 pic:3' CACTGAGTAGTGGATACCTTT 5'& || ||| ||||||| &5' ----CTTGTCAATAATGGAAA 3' UCHL3 hsv1-miR-H4 beg:90 end:112 pic:3' ACGAACGGAC-AGTTTGAGATGG 5'& |||| || |.|||||.||. &5' --CTTGA-TGATTAAACTTTAT- 3' UCHL3 kshv-miR-K12-10b beg:1 end:23 pic:3' CGGTGAGCCCCCCTGTTGTGGT 5'& |.|| ||| ||||||| &5' GTCAATAAT--GGA-AACACCA 3'

DNA & RNA Element - miRNAMap Gene Name Mature miRNA Target Start Target End miRNA 3-5 Alignment Target 5-3 UCHL3 hsa-miR-142-5p 105 112 CAUCACGAAAGA-----------------------UGAAAUAC |||||||| AAAAAUUUUGAUAUUUUCAUUAACUUGAUGAUUAAACUUUAUGU UCHL3 hsa-miR-561 103 110 U---------------GAAGUUC-----CUAG-AAUUUGAAAC :|||| ||| ||||||||| UCAAAAAUUUUGAUAUUUUCAUUAACUUGAUGAUUAAACUUUA UCHL3 hsa-miR-569 87 94 ----------------------UGAAAGGUCCUAAGUAAUUGA |:||| |||||||||| UCUGCCAUACACUAACUCAAAAAUUUUGAUAUUUUCAUUAACUU UCHL3 hsa-let-7b 54 72 UUGGUGUGUUGGAUGAUGGAGU- :|||:||| ||| |||| UGCCAUACA--CUAA---CUCAA UCHL3 hsa-let-7c 54 72 UUGGUAUGUUGGAUGAUGGAGU- :||||||| ||| |||| UGCCAUACA--CUAA---CUCAA UCHL3 hsa-miR-142-5p 104 114 CAUCACGAAAGAUGAAAUAC- |||||||| -----------AACUUUAUGU UCHL3 hsa-miR-185 39 60 CUUGACG-GAAAGAGA-GGU- |||| :||||||| ||| CAACUAAAUUUUCUCUGCCAU UCHL3 hsa-miR-18b 24 45 AUUGACGUGAUCUACGUGGAAU |||||:|:|| |||| || AAACUGUAUUAUUUGCAACUA- UCHL3 hsa-miR-34a 37 60 UUGUUGGUCGAUUCUGUGACGGU- :||||:| | | |||||| UGCAACUAAAUUUU-CUCUGCCAU UCHL3 hsa-miR-449 38 60 UGGUCGAUUGUUAUGUGACGGU- || |||| |||||| -GCAACUAAAUUUUCUCUGCCAU UCHL3 hsa-miR-561 83 111 UGAAGUUC-----CUAG-AAUUUGAAAC :|||| ||| ||||||||| UUUUCAUUAACUUGAUGAUUAAACUUUA UCHL3 hsa-miR-569 74 96 UGAAAGGUCCU-AAGUAAUUGA- |||: | |||||||||| -AUUUUGAUAUUUUCAUUAACUU UCHL3 hsa-miR-658 18 59 -UGGUUGCC-------UGGAUG-------AAGGGAGGCGG ||||| |::|:| ||::|||:||| CACCAAAAACUGUAUUAUUUGCAACUAAAUUUUCUCUGCCA UCHL3 hsa-miR-18b 24 45 aUUGACGUGAUCUACGUGGAau |||||:|:|| |||| || aAACTGTATTATTTGCAACTaa UCHL3 hsa-miR-34a 33 58 uuguugGUCGAUU---CUGUGACGGU || |||| | |||||| tatttgCAACTAAATTTTCTCTGCCA UCHL3 hsa-miR-449 37 58 ugGUCGAUUGUUAUGUGACGGU || |||| | | |||||| tgCAACTAAATTTTCTCTGCCA UCHL3 hsa-miR-658 33 57 ugguugccUGGAUGAAGGGAGGCGG ||: | ||::|||:||| tatttgcaACTAAATTTTCTCTGCC

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region UCHL3 High_conserved miR-135ab/135a-5p chr13:76178920 7-mer-m8 11 CDS UCHL3 High_conserved miR-144 chr13:76123704 7-mer-m8 9 ncRNA UCHL3 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr13:76140987 7-mer-m8 51 CDS, ncRNA UCHL3 High_conserved miR-183 chr13:76179873 7-mer-A1 62 CDS UCHL3 High_conserved miR-183 chr13:76180008 7-mer-A1 58 3pUTR UCHL3 High_conserved miR-194 chr13:76140890 7-mer-A1 42 CDS, ncRNA UCHL3 High_conserved miR-205/205ab chr13:76143634 7-mer-m8 64 CDS, ncRNA UCHL3 High_conserved miR-219-5p/508/508-3p/4782-3p chr13:76140921 7-mer-A1 42 CDS, ncRNA UCHL3 High_conserved miR-124/124ab/506 chr13:76180079 7-mer-A1 11 3pUTR UCHL3 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr13:76140878 8-mer 56 CDS, ncRNA UCHL3 High_conserved miR-499-5p chr13:76134994 7-mer-m8 11 CDS, ncRNA UCHL3 Medium_conserved miR-504/4725-5p chr13:76123967 7-mer-A1 53 CDS, 5pUTR UCHL3 Medium_conserved miR-544/544ab/544-3p chr13:76164120 7-mer-m8 49 CDS UCHL3 Medium_conserved miR-615-3p chr13:76123654 7-mer-m8 20 ncRNA UCHL3 Medium_conserved miR-615-3p chr13:76123659 8-mer 16 ncRNA UCHL3 Medium_conserved miR-149 chr13:76141430 8-mer 64 CDS, ncRNA UCHL3 Medium_conserved miR-185/882/3473/4306/4644 chr13:76164210 7-mer-m8 56 CDS UCHL3 Medium_conserved miR-197 chr13:76178939 7-mer-A1 18 CDS UCHL3 Medium_conserved miR-376abd/376b-3p chr13:76169122 8-mer 78 CDS, ncRNA UCHL3 Medium_conserved miR-379/1193-5p/3529 chr13:76164244 8-mer 4 CDS UCHL3 Medium_conserved miR-384/384-3p chr13:76123723 7-mer-A1 7 ncRNA UCHL3 Medium_conserved miR-433 chr13:76140910 7-mer-A1 76 CDS, ncRNA UCHL3 Medium_conserved miR-485-5p/1698/1703/1962 chr13:76164102 8-mer 67 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score UCHL3 RAID00018612 hsa-miR-374a-5p miRNA MIMAT0000727 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00050629 hsa-miR-369-3p miRNA MIMAT0000721 UCHL3 mRNA 7347 Prediction 0.2202 UCHL3 RAID00062809 hsa-miR-136-5p miRNA MIMAT0000448 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00063932 hsa-miR-375 miRNA MIMAT0000728 UCHL3 mRNA 7347 Microarray 0.5483 UCHL3 RAID00106795 hsa-miR-4534 miRNA MIMAT0019073 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00115533 hsa-miR-125b-5p miRNA MIMAT0000423 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00124170 hsa-miR-17-5p miRNA MIMAT0000070 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00211915 hsa-miR-373-5p miRNA MIMAT0000725 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00280456 hsa-miR-3688-3p miRNA MIMAT0018116 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00294627 hsa-miR-9-5p miRNA MIMAT0000441 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00300664 hsa-miR-301a-3p miRNA MIMAT0000688 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00311535 hsa-miR-4789-3p miRNA MIMAT0019960 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00323512 hsa-miR-449b-5p miRNA MIMAT0003327 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00324448 hsa-miR-655-3p miRNA MIMAT0003331 UCHL3 mRNA 7347 Prediction 0.2202 UCHL3 RAID00446801 hsa-miR-374b-5p miRNA MIMAT0004955 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00482367 hsa-let-7a-5p miRNA MIMAT0000062 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00537441 hsa-miR-93-5p miRNA MIMAT0000093 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00546461 hsa-miR-19a-3p miRNA MIMAT0000073 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00578780 hsa-miR-449a miRNA MIMAT0001541 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00585122 hsa-miR-26a-5p miRNA MIMAT0000082 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00613644 hsa-miR-4633-5p miRNA MIMAT0019689 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00662404 hsa-miR-7156-5p miRNA MIMAT0028222 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00687425 hsa-miR-561-3p miRNA MIMAT0003225 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID00731867 hsa-miR-190a-3p miRNA MIMAT0026482 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00866203 hsa-miR-499a-5p miRNA MIMAT0002870 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID00872955 hsa-miR-335-3p miRNA MIMAT0004703 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID00881087 hsa-miR-513c-5p miRNA MIMAT0005789 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00882547 hsa-let-7f-5p miRNA MIMAT0000067 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID00931070 hsa-miR-5580-3p miRNA MIMAT0022274 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID00933223 hsa-miR-377-3p miRNA MIMAT0000730 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID00981735 hsa-miR-142-5p miRNA MIMAT0000433 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID01147123 hsa-miR-130b-5p miRNA MIMAT0004680 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01184748 hsa-miR-490-3p miRNA MIMAT0002806 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID01278410 hsa-miR-139-5p miRNA MIMAT0000250 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID01308451 hsa-miR-2682-3p miRNA MIMAT0013518 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01308712 hsa-miR-4273 miRNA MIMAT0016903 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID01332379 hsa-miR-8485 miRNA MIMAT0033692 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID01341301 hsa-miR-125a-5p miRNA MIMAT0000443 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01476794 hsa-miR-532-5p miRNA MIMAT0002888 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01546460 hsa-miR-4319 miRNA MIMAT0016870 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01580139 hsa-miR-569 miRNA MIMAT0003234 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID01591433 hsa-miR-185-5p miRNA MIMAT0000455 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID01599563 hsa-miR-513b-5p miRNA MIMAT0005788 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID01599929 hsa-let-7e-5p miRNA MIMAT0000066 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID01651763 hsa-miR-372-5p miRNA MIMAT0026484 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID01828472 hsa-miR-3144-3p miRNA MIMAT0015015 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID01860789 hsa-miR-149-5p miRNA MIMAT0000450 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID01875958 hsa-miR-301b-3p miRNA MIMAT0004958 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID01881231 hsa-miR-590-3p miRNA MIMAT0004801 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID01902299 hsa-miR-4328 miRNA MIMAT0016926 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID01906987 hsa-miR-875-5p miRNA MIMAT0004922 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID01989111 hsa-miR-6750-3p miRNA MIMAT0027401 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02015179 hsa-miR-3941 miRNA MIMAT0018357 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02097004 hsa-miR-142-3p miRNA MIMAT0000434 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID02100974 hsa-miR-5011-5p miRNA MIMAT0021045 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02117681 hsa-miR-8082 miRNA MIMAT0031009 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02124034 hsa-miR-20a-5p miRNA MIMAT0000075 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02156510 hsa-miR-137 miRNA MIMAT0000429 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02184999 hsa-miR-6507-3p miRNA MIMAT0025471 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02225524 hsa-miR-4684-3p miRNA MIMAT0019770 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02278562 hsa-miR-3134 miRNA MIMAT0015000 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02320164 hsa-miR-519d-3p miRNA MIMAT0002853 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02327875 hsa-miR-20b-5p miRNA MIMAT0001413 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02350564 hsa-let-7d-5p miRNA MIMAT0000065 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID02391864 hsa-miR-3124-3p miRNA MIMAT0019200 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02394376 hsa-miR-3919 miRNA MIMAT0018193 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02413236 hsa-miR-340-5p miRNA MIMAT0004692 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02413768 hsa-miR-4282 miRNA MIMAT0016912 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02441309 hsa-miR-6781-3p miRNA MIMAT0027463 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02484149 hsa-miR-1297 miRNA MIMAT0005886 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02682606 hsa-miR-23b-3p miRNA MIMAT0000418 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02698404 hsa-miR-548p miRNA MIMAT0005934 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02716175 hsa-miR-514b-5p miRNA MIMAT0015087 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02724649 hsa-miR-371b-5p miRNA MIMAT0019892 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02731053 hsa-miR-106a-5p miRNA MIMAT0000103 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID02759960 hsa-miR-6768-5p miRNA MIMAT0027436 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02777621 hsa-miR-342-3p miRNA MIMAT0000753 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID02814323 hsa-miR-603 miRNA MIMAT0003271 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02827763 hsa-miR-616-5p miRNA MIMAT0003284 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02925726 hsa-miR-329-3p miRNA MIMAT0001629 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02973191 hsa-miR-362-3p miRNA MIMAT0004683 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID02987315 hsa-miR-5590-3p miRNA MIMAT0022300 UCHL3 mRNA 7347 Prediction 0.2202 UCHL3 RAID03002067 hsa-miR-183-5p miRNA MIMAT0000261 UCHL3 mRNA 7347 CLIP-seq//CLASH//Prediction 0.7353 UCHL3 RAID03016781 ebv-miR-BART21-3p miRNA MIMAT0010131 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID03052049 hsa-let-7c-5p miRNA MIMAT0000064 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03108325 hsa-let-7g-5p miRNA MIMAT0000414 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03153220 hsa-miR-5692a miRNA MIMAT0022484 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID03218446 hsa-miR-371a-5p miRNA MIMAT0004687 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID03258208 hsa-miR-361-5p miRNA MIMAT0000703 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03335500 hsa-miR-606 miRNA MIMAT0003274 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID03403002 hsa-miR-129-5p miRNA MIMAT0000242 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03414686 hsa-miR-5093 miRNA MIMAT0021085 UCHL3 mRNA 7347 CLIP-seq 0.5483 UCHL3 RAID03664187 hsa-miR-374c-5p miRNA MIMAT0018443 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID03699322 hsa-miR-205-5p miRNA MIMAT0000266 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID03710163 hsa-miR-34c-5p miRNA MIMAT0000686 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03745388 hsa-miR-106b-5p miRNA MIMAT0000680 UCHL3 circRNA 7347 CLIP-seq 0.5483 UCHL3 RAID03780450 hsa-let-7b-5p miRNA MIMAT0000063 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03806425 hsa-miR-2117 miRNA MIMAT0011162 UCHL3 mRNA 7347 PAR-CLIP 0.5483 UCHL3 RAID03838679 hsa-let-7i-5p miRNA MIMAT0000415 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03875193 hsa-miR-19b-3p miRNA MIMAT0000074 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03896129 hsa-miR-23a-3p miRNA MIMAT0000078 UCHL3 mRNA 7347 Prediction 0.1828 UCHL3 RAID03931004 hsa-miR-26b-5p miRNA MIMAT0000083 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID03979561 hsa-miR-539-5p miRNA MIMAT0003163 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID04048330 hsa-miR-98-5p miRNA MIMAT0000096 UCHL3 mRNA 7347 CLIP-seq//Prediction 0.6308 UCHL3 RAID04617746 FENDRR lncRNA 400550 UCHL3 protein 7347 Microarray//RNA-seq 0.6606 UCHL3 RAID05133609 CRNDE lncRNA 643911 UCHL3 protein 7347 Microarray//RNA-seq 0.6606