DNA & RNA Element - UTRdb Gene Name Type ASPicDB UTRaspic Refseq ID Genome USP29 3'UTR 28aedb2d74 BA117494 NM_020903 chr19:62334625-62335106:+ USP29 3'UTR e43c679ea9 BA117495 NM_020903 chr19:62334625-62334967:+ USP29 5'UTR 28aedb2d74 CA184533 NM_020903 chr19:62323321-62331855:+ USP29 5'UTR e43c679ea9 CA184534 NM_020903 chr19:62322318-62331855:+

DNA & RNA Element - miRTarBase Target Gene (Entrez ID) miRTarBase ID miRNA Species (miRNA) Target Gene Species (Target Gene) Experiments Support Type References (PMID) MIRT016785 hsa-miR-335-5p Homo sapiens USP29 57663 Homo sapiens Microarray Functional MTI (Weak) 18185580

DNA & RNA Element - microRNA Mirbase Acc miRNA Name Gene ID Gene Symbol miRNA Alignment Alignment Gene Alignment miRNA Start miRNA End Gene Start Gene End Genome Coordinates Conservation Align Score Seed Cat Energy mirSVR Score MIMAT0004495 hsa-miR-22* 57663 USP29 auuucgaacgguGACUUCUUGa :|||||||| gcucaugaaaguUUGAAGAACa 2 11 380 401 [hg19:19:57643192-57643213:+] 0.5109 146 7 -12.56 -1.0551 MIMAT0004500 hsa-miR-26b* 57663 USP29 cucGGUUCAUUACCUC-UUGUCc |||| |:||| || ||||| agaCCAACUGAUGCAGAAACAGg 2 20 323 345 [hg19:19:57643135-57643157:+] 0.5109 139 0 -21.45 -0.2498 MIMAT0004558 hsa-miR-181a-2* 57663 USP29 ccaugUCAGUUGCCAGUC-ACCa || ||:| |||| ||| gugugAGCCAGCAAUCAGAUGGa 2 18 348 370 [hg19:19:57643160-57643182:+] 0.5109 121 0 -15.17 -0.8290 MIMAT0004613 hsa-miR-188-3p 57663 USP29 acgUUUGGGAC--GUACAC-CCUc :||| ||| ||||| ||| gaaGAACACUGGUAAUGUGUGGAg 2 19 394 417 [hg19:19:57643206-57643229:+] 0.5109 121 0 -20.04 -0.9774 MIMAT0004682 hsa-miR-361-3p 57663 USP29 uuUAGUCUUAGUG--U-GGACCCCCu || | || ||| | ::|||||| caAUGAAAAACACUUAUUUUGGGGGa 2 22 115 140 [hg19:19:57642927-57642952:+] 0.5136 139 6 -20.84 -0.2875 MIMAT0000716 hsa-miR-302c* 57663 USP29 gucGUCCAUGG-GGGUACAAUuu :| | |:: |::|||||| ugaUAUGGAUUGCUUAUGUUAua 3 20 442 464 [hg19:19:57643254-57643276:+] 0.5225 130 0 -10.51 -0.2018 MIMAT0004686 hsa-miR-367* 57663 USP29 ucucaACGUAUAAUCGUUGUCa | || | |||||||| uguucUUCA-ACCAGCAACAGc 2 18 256 276 [hg19:19:57643068-57643088:+] 0.5167 147 7 -11.66 -0.6283 MIMAT0004686 hsa-miR-367* 57663 USP29 ucUCAACGUAUAAUCGUU-GUCa || ||:: : ||||| ||| ggAGGUGUGAGCCAGCAAUCAGa 2 21 344 366 [hg19:19:57643156-57643178:+] 0.5109 120 0 -13.62 -0.3347 MIMAT0000755 hsa-miR-323-3p 57663 USP29 ucuccagcUGGCACAUUACAc ||:| ||||||| ugaagaacACUG-GUAAUGUg 2 14 393 412 [hg19:19:57643205-57643224:+] 0.5109 147 7 -16.59 -0.3618 MIMAT0004699 hsa-miR-148b* 57663 USP29 cggacucacaUAUUGUCUUGAa || ||||||| agacaccuagAUCCCAGAACUc 2 13 161 182 [hg19:19:57642973-57642994:+] 0.5128 144 7 -12.46 -0.2303 MIMAT0004703 hsa-miR-335* 57663 USP29 ccAGUCCU-CGUUA---UUACUUUUu |||||| | ||| |||||||| ucUCAGGAUGAAAUCUCAAUGAAAAa 2 21 99 124 [hg19:19:57642911-57642936:+] 0.5267 166 7 -15.53 -1.0872 MIMAT0004749 hsa-miR-424* 57663 USP29 uaucguCGCGGAGUGCAAAAc || |:||||||||| aaugguGCUCUUCACGUUUUg 2 16 216 236 [hg19:19:57643028-57643048:+] 0.4752 163 7 -25.71 -0.1616 MIMAT0001636 hsa-miR-452* 57663 USP29 guGA-AUGAAGAAACGUC-UACUc || |||||| | ||| |||| ucCUGUACUUCACU-CAGAAUGAa 2 21 66 88 [hg19:19:57642878-57642900:+] 0.5112 125 0 -11.97 -0.4367 MIMAT0004768 hsa-miR-497* 57663 USP29 agAUUGUGGUG-UCACACCAAAc | ||::: : | ||||||| cuUCACGUUUUGACGGUGGUUUu 2 21 225 247 [hg19:19:57643037-57643059:+] 0.4752 143 7 -11.41 -0.2838 MIMAT0002831 hsa-miR-519c-5p 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0002835 hsa-miR-526b 57663 USP29 ugucuuucacGAAGGGA-GUUCUc :|||||| ||||| auaugcauauUUUCCCUGCAAGAu 2 14 189 212 [hg19:19:57643001-57643024:+] 0.5251 125 0 -15.15 -0.4957 MIMAT0005454 hsa-miR-519b-5p 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0005449 hsa-miR-523* 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0002841 hsa-miR-518f* 57663 USP29 cucuuuCACGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -13.72 -0.2919 MIMAT0002845 hsa-miR-526a 57663 USP29 gucuuuCACGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -13.72 -0.2919 MIMAT0005455 hsa-miR-520c-5p 57663 USP29 gucuuuCACGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -13.72 -0.2919 MIMAT0005450 hsa-miR-518e* 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0005456 hsa-miR-518d-5p 57663 USP29 gucuuuCACGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -13.72 -0.2919 MIMAT0005451 hsa-miR-522* 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0005452 hsa-miR-519a* 57663 USP29 gucuuuCGCGAAGGGAGAUCUc | |: |:||||||| auucuuGGGUCACUCUCUAGAc 2 17 305 326 [hg19:19:57643117-57643138:+] 0.5109 148 7 -14.08 -0.2894 MIMAT0003235 hsa-miR-570 57663 USP29 cguuuccaUUAACGACAA-AAGc || ||:|||| ||| gguuuucaAAAUGUUGUUCUUCa 2 15 242 264 [hg19:19:57643054-57643076:+] 0.4710 122 0 -7.32 -0.8185 MIMAT0003238 hsa-miR-573 57663 USP29 gaCU-AGUCAAUGUGUAGUGAAGUc || ||| | : :| |||||||| caGACUCACUCG-GCCUCACUUCAu 2 23 1 24 [hg19:19:57642813-57642836:+] 0.4810 155 7 -13.78 -0.6919 MIMAT0003241 hsa-miR-576-5p 57663 USP29 uuUCUGCACCUCUUUAAUCUUa || : ||| :||||||| acAGCUAGGGACUGAUUAGAAa 2 21 278 299 [hg19:19:57643090-57643111:+] 0.5223 152 7 -11.04 -0.4965 MIMAT0003241 hsa-miR-576-5p 57663 USP29 uuucuGCACCUCUUUAAUCUUa | || | |:||||||| uuuucCCUGCA-AGAUUAGAAu 2 18 198 218 [hg19:19:57643010-57643030:+] 0.5251 151 7 -8.30 -0.2707 MIMAT0003251 hsa-miR-548a-3p 57663 USP29 cgUUUUCAUUAACGGU-CAAAAc || :||: | :|| ||||| agAAUGGUGCUCUUCACGUUUUg 2 21 214 236 [hg19:19:57643026-57643048:+] 0.4752 120 0 -9.80 -0.2100 MIMAT0003263 hsa-miR-595 57663 USP29 ucuguguggugccgUGUGAAg |||||| aaucucaaugaaaaACACUUa 2 8 110 130 [hg19:19:57642922-57642942:+] 0.5267 120 6 -8.22 -0.1451 MIMAT0003269 hsa-miR-601 57663 USP29 gaGGAGGUUGUUAG-GAUCUGGu |:| : || || ||||||| uuCUUGGGUCACUCUCUAGACCa 2 21 306 328 [hg19:19:57643118-57643140:+] 0.5109 151 7 -20.02 -0.5857 MIMAT0004805 hsa-miR-616 57663 USP29 gaCGAGUUUGGGAGGUUACUga | | |||:| :|||||| agGAUGAAAUC--UCAAUGAaa 3 21 103 122 [hg19:19:57642915-57642934:+] 0.5267 133 0 -10.42 -0.1798 MIMAT0003296 hsa-miR-627 57663 USP29 aggagaaaagaaucUCUGAGUg ||||||| -------------cAGACUCAc 2 9 1 9 [hg19:19:57642813-57642821:+] 0.4883 140 7 -12.50 -0.2560 MIMAT0003882 hsa-miR-767-5p 57663 USP29 guACGAGUCUGUUGGUACCACGu ||| |||: | ||||||| ccUGC-AAGAUUAGAAUGGUGCu 2 22 203 224 [hg19:19:57643015-57643036:+] 0.5251 155 7 -17.01 -0.7662 MIMAT0003883 hsa-miR-767-3p 57663 USP29 ucUUUGGUACCCCAUACUC-GUCu :|| || | |||:|||| ||| caGAAACAGGAGGUGUGAGCCAGc 2 22 336 359 [hg19:19:57643148-57643171:+] 0.5109 137 0 -26.25 -0.4802 MIMAT0005795 hsa-miR-1323 57663 USP29 ucUUUUACGGGGAGU-CAAAACu | ::|||:|:||| |||||| gaAUGGUGCUCUUCACGUUUUGa 2 21 215 237 [hg19:19:57643027-57643049:+] 0.4752 140 6 -24.10 -0.3493 MIMAT0003887 hsa-miR-769-3p 57663 USP29 uugguUCUGGGGCCUCUAGGGUc |||| || |||||||| gcuucAGACACC-UAGAUCCCAg 2 19 156 177 [hg19:19:57642968-57642989:+] 0.5128 160 7 -26.02 -0.6619 MIMAT0004909 hsa-miR-450b-5p 57663 USP29 auaaguccuuGUA-UAACGUUUu ||| ||||||| ggccucacuuCAUCCUUGCAAAg 2 13 12 34 [hg19:19:57642824-57642846:+] 0.4810 143 7 -9.32 -0.5708 MIMAT0004909 hsa-miR-450b-5p 57663 USP29 auaaguccuuGUA-UAACGUUUu ||| ||||||| uccuguacuuCAUCCUUGCAAAg 2 13 39 61 [hg19:19:57642851-57642873:+] 0.4846 143 7 -8.48 -0.3234 MIMAT0004910 hsa-miR-450b-3p 57663 USP29 auaccuacguuuuaCUAGGGUu ||||||| gcuucagacaccuaGAUCCCAg 2 9 156 177 [hg19:19:57642968-57642989:+] 0.5128 140 7 -13.51 -0.6731 MIMAT0005583 hsa-miR-1228 57663 USP29 ccccccgcUCCGUCCACACu ||| ||||||| gcagaaacAGG-AGGUGUGa 2 13 335 353 [hg19:19:57643147-57643165:+] 0.5109 146 7 -18.43 -0.3429 MIMAT0005863 hsa-miR-1200 57663 USP29 cuCCGAGUCUUACCGAGUCCUc || || |:| ||||||| aaGGAACA-AGUAUCUCAGGAu 2 21 87 107 [hg19:19:57642899-57642919:+] 0.5267 150 7 -17.06 -0.9108 MIMAT0005874 hsa-miR-548e 57663 USP29 acgUUUUCAUCAG-AGU-CAAAAa || :||: || ||| ||||| uagAAUGGUGCUCUUCACGUUUUg 2 20 213 236 [hg19:19:57643025-57643048:+] 0.4752 126 0 -8.65 -0.2158 MIMAT0005885 hsa-miR-1295 57663 USP29 aguggGUCU-AG-ACGCCGGAuu |||| || |||||| -----CAGACUCACUCGGCCUca 3 17 1 18 [hg19:19:57642813-57642830:+] 0.4883 126 0 -16.62 -0.1269 MIMAT0005919 hsa-miR-548o 57663 USP29 cgUUUUCAU-UGACGU-CAAAACc || :||: || || |||||| agAAUGGUGCUCUUCACGUUUUGa 2 21 214 237 [hg19:19:57643026-57643049:+] 0.4752 123 6 -9.11 -0.3636 MIMAT0005921 hsa-miR-1267 57663 USP29 accccUAAUGUGAAGUU-GUCc :||:: |||||| ||| aaaauGUUGUUCUUCAACCAGc 2 17 249 270 [hg19:19:57643061-57643082:+] 0.5167 124 0 -11.41 -0.5519 MIMAT0005934 hsa-miR-548p 57663 USP29 uuUCAUUG-ACGUCA-AAAACGAu |||| | || || ||||||| ggAGUAUCUUGGUGUAUUUUGCUa 2 21 414 437 [hg19:19:57643226-57643249:+] 0.5188 158 7 -14.72 -0.9939 MIMAT0007887 hsa-miR-1912 57663 USP29 aagugUGACGUACGAG-ACCCAu | |||| :|| ||||| uuagaAAUGCAAAUUCUUGGGUc 2 18 293 315 [hg19:19:57643105-57643127:+] 0.5194 121 0 -14.17 -0.6273 MIMAT0011156 hsa-miR-2114 57663 USP29 cuGGCGAAGUUCCUUCCCUGAu | || | || ||||||| aaCAGCAAC-AGCUAGGGACUg 2 21 271 291 [hg19:19:57643083-57643103:+] 0.5223 146 7 -19.09 -0.4825 MIMAT0014983 hsa-miR-3121 57663 USP29 acaggaaacggAUGAGAUAAAu || ||||||| uuuugggggaaUA-UCUAUUUu 2 12 131 151 [hg19:19:57642943-57642963:+] 0.5136 141 7 -7.10 -0.8656 MIMAT0015051 hsa-miR-3174 57663 USP29 ccgagacguagaGAUUGAGUGAu | :||||||| ------------CAGACUCACUc 2 12 1 11 [hg19:19:57642813-57642823:+] 0.4883 143 7 -9.95 -0.2873 MIMAT0016867 hsa-miR-4316 57663 USP29 guGGUCGAUCGGAGUGg :|| : :||||||| acUCACUCGGCCUCACu 2 16 4 20 [hg19:19:57642816-57642832:+] 0.4883 147 7 -17.22 -0.9480 MIMAT0016868 hsa-miR-4314 57663 USP29 gacaGGGUAAAGGGUCUc ||:| ||||||| gacaCCUAGAUCCCAGAa 2 15 162 179 [hg19:19:57642974-57642991:+] 0.5251 150 7 -18.11 -0.9747 MIMAT0016871 hsa-miR-4320 57663 USP29 uccuucgaUGUCUUAGGg | ||||||| ccuugcaaAGAGAAUCCu 2 11 25 42 [hg19:19:57642837-57642854:+] 0.4737 142 7 -10.58 -0.3380 MIMAT0016871 hsa-miR-4320 57663 USP29 uccuucgaUGUCUUAGGg | ||||||| ccuugcaaAGAGAAUCCu 2 11 52 69 [hg19:19:57642864-57642881:+] 0.4846 142 7 -10.58 -0.3703 MIMAT0016876 hsa-miR-4324 57663 USP29 aaUUCC--AAUCCCAGAGUCCc |||| || ||||||| ugAAGGAACAAGUAUCUCAGGa 2 19 85 106 [hg19:19:57642897-57642918:+] 0.5267 145 7 -16.04 -1.1217 MIMAT0016880 hsa-miR-4259 57663 USP29 agGACUGGGGAUCU-GGG--UUGAc | ||| |||||| ||| |||| uuCAGACACCUAGAUCCCAGAACUc 2 21 158 182 [hg19:19:57642970-57642994:+] 0.5128 123 0 -21.98 -0.3108 MIMAT0016885 hsa-miR-4255 57663 USP29 agguagagaCUUGUGAc ||||||| aaguuugaaGAACACUg 2 9 388 404 [hg19:19:57643200-57643216:+] 0.5109 140 7 -13.08 -0.5836 MIMAT0016915 hsa-miR-4284 57663 USP29 uaccCCACUACACUCGGg || |:|||||||| aacaGGAGGUGUGAGCCa 2 15 340 357 [hg19:19:57643152-57643169:+] 0.5109 158 7 -22.36 -0.6586 MIMAT0000084 hsa-miR-27a 57663 USP29 cgcCUUGAAUCGGUGAC-ACUu | |:|| ||:|||| ||| gguGUAUUUUGCUACUGUUGAu 2 19 424 445 [hg19:19:57643236-57643257:+] 0.5266 130 0 -17.44 -0.8571 MIMAT0000086 hsa-miR-29a 57663 USP29 auuggCUAAAGUCUACCACGAu |||| | |||||||| ugcaaGAUUAGA-AUGGUGCUc 2 18 205 225 [hg19:19:57643017-57643037:+] 0.5251 155 7 -15.50 -0.8574 MIMAT0000100 hsa-miR-29b 57663 USP29 uugugaCUAAAGUUUACCACGAu || || :||||||||| cugcaaGA-UUAGAAUGGUGCUc 2 18 204 225 [hg19:19:57643016-57643037:+] 0.5251 159 7 -17.69 -0.8574 MIMAT0000231 hsa-miR-199a-5p 57663 USP29 cuuguccaUCAGA---CUUGUGACCc |||:| ||||||||| cucaugaaAGUUUGAAGAACACUGGu 2 16 381 406 [hg19:19:57643193-57643218:+] 0.5109 154 7 -18.85 -0.8944 MIMAT0000261 hsa-miR-183 57663 USP29 ucACUUAAGAUGGUCACG-GUAu ||:| :| |:||||| ||| gaUGGAGAUU-CUAGUGCUCAUg 2 21 365 386 [hg19:19:57643177-57643198:+] 0.5109 122 0 -17.79 -0.7359 MIMAT0000263 hsa-miR-199b-5p 57663 USP29 cuuGU-CUAUCAGA---UUUGUGACCc || || |||:| :|||||||| gcuCAUGAAAGUUUGAAGAACACUGGu 2 21 380 406 [hg19:19:57643192-57643218:+] 0.5109 158 7 -19.02 -0.8944 MIMAT0000266 hsa-miR-205 57663 USP29 gucUGAGGCCA-CCUUACUUCCu |||:| | ||||||||| uguACUUCACUCAGAAUGAAGGa 2 20 69 91 [hg19:19:57642881-57642903:+] 0.5112 158 7 -19.53 -0.9917 MIMAT0000273 hsa-miR-216a 57663 USP29 aguGUCAACGGUCGA-CUCUAAu ||| :||| | |||||| agcCAGCAAUCAGAUGGAGAUUc 2 20 353 375 [hg19:19:57643165-57643187:+] 0.5109 123 6 -16.05 -0.6239 MIMAT0000419 hsa-miR-27b 57663 USP29 cguCUUGAAUCGGUGAC-ACUu | |:|| ||:|||| ||| gguGUAUUUUGCUACUGUUGAu 2 19 424 445 [hg19:19:57643236-57643257:+] 0.5266 130 0 -14.48 -0.8571 MIMAT0000450 hsa-miR-149 57663 USP29 ccCUCACUUCUGUGC-CUCGGUCu || |:|| ::| ||||||| caGAAACAGGAGGUGUGAGCCAGc 2 22 336 359 [hg19:19:57643148-57643171:+] 0.5109 152 7 -20.88 -0.3685 MIMAT0000451 hsa-miR-150 57663 USP29 gugaccauguucccAACCCUCu |||||:| gaaaaacacuuauuUUGGGGGa 2 9 119 140 [hg19:19:57642931-57642952:+] 0.5136 124 0 -15.23 -0.1045 MIMAT0000681 hsa-miR-29c 57663 USP29 auuggCUAAAGUUUACCACGAu || || :||||||||| ugcaaGA-UUAGAAUGGUGCUc 2 18 205 225 [hg19:19:57643017-57643037:+] 0.5251 159 7 -16.40 -0.8574 MIMAT0000688 hsa-miR-301a 57663 USP29 cgaAACUGUUAUGAUAACG-UGAc |||:: :||:| |||| ||| aucUUGGU-GUAUU-UUGCUACUg 2 21 419 440 [hg19:19:57643231-57643252:+] 0.5266 120 0 -13.94 -0.8034 MIMAT0000753 hsa-miR-342-3p 57663 USP29 ugcccacgcuaaagaCACACUCu ||||||| augcagaaacaggagGUGUGAGc 2 9 333 355 [hg19:19:57643145-57643167:+] 0.5109 140 7 -13.78 -0.1509 MIMAT0001532 hsa-miR-448 57663 USP29 uacccuguaggaUGUAUACGUu :|||||||| cagaacucaggcGCAUAUGCAu 2 11 175 196 [hg19:19:57642987-57643008:+] 0.5251 146 7 -12.47 -0.3081 MIMAT0002171 hsa-miR-410 57663 USP29 ugUCCGGUAGACACAAUAUAa :| ::: :| |||||||| auGGAUUGCUUAUGUUAUAUa 2 20 446 466 [hg19:19:57643258-57643278:+] 0.5225 151 7 -9.11 -1.1693 MIMAT0002878 hsa-miR-506 57663 USP29 agaugAGUCUUCCCACG-GAAu |:|||| ||||| ||| caagaUUAGAAUGGUGCUCUUc 2 17 207 228 [hg19:19:57643019-57643040:+] 0.5251 132 0 -16.10 -0.4336 MIMAT0003164 hsa-miR-544 57663 USP29 cuuGAAC-GAUU-UUUACGUCUUa || | | || :|||||||| ucuCUAGACCAACUGAUGCAGAAa 2 20 318 341 [hg19:19:57643130-57643153:+] 0.5109 149 7 -12.13 -0.4967 MIMAT0003339 hsa-miR-421 57663 USP29 cgCGGGUUAAUUACAGACAACUa |: :| || : ||||||| ugGUGUAUUUUGCUACUGUUGAu 2 22 423 445 [hg19:19:57643235-57643257:+] 0.5266 145 7 -13.84 -0.9551 MIMAT0004924 hsa-miR-876-5p 57663 USP29 accacuaAGUGUUUCU-UUAGGu |::|||||| ||||| uucauccUUGCAAAGAGAAUCCu 2 16 20 42 [hg19:19:57642832-57642854:+] 0.4810 131 0 -12.28 -0.3660 MIMAT0004924 hsa-miR-876-5p 57663 USP29 accacuaAGUGUUUCU-UUAGGu |::|||||| ||||| uucauccUUGCAAAGAGAAUCCu 2 16 47 69 [hg19:19:57642859-57642881:+] 0.4846 131 0 -12.28 -0.3938 MIMAT0004958 hsa-miR-301b 57663 USP29 cgaAACUGUUAUAGUAACG-UGAc |||:: :|||: |||| ||| aucUUGGU-GUAUU-UUGCUACUg 2 21 419 440 [hg19:19:57643231-57643252:+] 0.5266 120 0 -13.87 -0.8034

DNA & RNA Element - TRANSFAC Accession AS Description Species Entrez Pubmed Binding Info G048513 USP29 Homo sapiens 57663 21285945 0 0 R39692; HS$USP29_01; Binding factors: FBP , FBP:JTV1

DNA & RNA Element - TargetScan Gene Name UTR Region Start UTR Region End AIR Total Normalized 3P-seq-tags & Pseudocounts Strand hg19_chromosome Genome Start Genome End USP29 1 482 100 5.01 + chr19 57642812 57643294

DNA & RNA Element - RepTar Gene Name miRNA Begin End Profile USP29 hsa-miR-199a-5p beg:387 end:406 pic:3' CTTGTCCATCAGACT---TGTGACCC 5'& |||.||| ||||||| &5' --------AGTTTGAAGAACACTGG- 3' USP29 hsa-miR-4320 beg:26 end:43 pic:3' TCCTTCGA-TGTCTTAGGG 5'& || | |||||||. &5' -----GCAAAGAGAATCCT 3' USP29 hsa-miR-4320 beg:53 end:70 pic:3' TCCTTCGA-TGTCTTAGGG 5'& || | |||||||. &5' -----GCAAAGAGAATCCT 3' USP29 hsa-miR-627 beg:0 end:10 pic:3' AGGAGAAAAGAATCTCTGAGTG 5'& |||||||| &5' --------------AGACTCAC 3' USP29 hsa-miR-1228 beg:340 end:354 pic:3' CCCCCCGCTCCGTCCACACT 5'& ||| |||||||| &5' --------AGG-AGGTGTGA 3' USP29 hsa-miR-148bstar beg:163 end:182 pic:3' CGGACTCACATATTGTCTTGAA 5'& ||| || || ||||||| &5' -CCT-AG---ATCCCAGAACT- 3' USP29 hsa-miR-601 beg:311 end:329 pic:3' GAG-GAGGTTGTTAGGATCTGGT 5'& || |||. |||||||| &5' -TCACTCT-------CTAGACCA 3' USP29 hsa-miR-518estar beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-519astar beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-519b-5p beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-519c-5p beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-522star beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-523star beg:308 end:326 pic:3' GTCTTTCGCGAAGGGAGATCTC 5'& | |. |.||||||| &5' ------GGGTCACTCTCTAGA- 3' USP29 hsa-miR-518d-5p beg:310 end:326 pic:3' GTCTTTCACGAAGGGAGATCTC 5'& |. |.||||||| &5' --------GTCACTCTCTAGA- 3' USP29 hsa-miR-518fstar beg:310 end:326 pic:3' CTCTTTCACGAAGGGAGATCTC 5'& |. |.||||||| &5' --------GTCACTCTCTAGA- 3' USP29 hsa-miR-520c-5p beg:310 end:326 pic:3' GTCTTTCACGAAGGGAGATCTC 5'& |. |.||||||| &5' --------GTCACTCTCTAGA- 3' USP29 hsa-miR-526a beg:310 end:326 pic:3' GTCTTTCACGAAGGGAGATCTC 5'& |. |.||||||| &5' --------GTCACTCTCTAGA- 3' USP29 ebv-miR-BART21-3p beg:265 end:286 pic:3' TTTGTGGTCACC--CG-TGTTGATC 5'& |||| || |||.|||| &5' -----CCAGCAACAGCAACAGCTAG 3' USP29 hsa-miR-4255 beg:394 end:405 pic:3' AGGTAGAGACTTGTGAC 5'& |||||||| &5' ---------GAACACTG 3' USP29 hsa-miR-149 beg:341 end:358 pic:3' CCCTCACTTCTGTGCCTCGGTCT 5'& |.||. . ||||||| &5' ------GGAGGTGT-GAGCCAG- 3' USP29 hsa-miR-367star beg:266 end:282 pic:3' TCTCAACGTATAATCGTTGTCA 5'& ||| |||||||| &5' ------GCAAC--AGCAACAG- 3' USP29 hsa-miR-4316 beg:1 end:21 pic:3' GTGGTCGA-TCGGAGTGG 5'& ||. || .|||||||. &5' -ACTCACTCGGCCTCACT 3' USP29 hsa-miR-323-3p beg:398 end:413 pic:3' TCTCCAGCTGGCACATTACAC 5'& ||.| |||||||| &5' --------ACTG-GTAATGTG 3' USP29 hsa-miR-4284 beg:341 end:357 pic:3' TACCCCACTACACTCGGG 5'& || |.|||||||| &5' ----GGAGGTGTGAGCC- 3' USP29 hsa-let-7c beg:150 end:162 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||.|.||| &5' -------------ACTGCTTCA 3' USP29 hsa-let-7c beg:37 end:51 pic:3' TTGGTATGTTGGATGATGGAGT 5'& |||. |||.||| &5' ----------CCTG-TACTTCA 3' USP29 hsa-miR-1200 beg:85 end:107 pic:3' CTCCGAGTCTTACCGAGTCCTC 5'& ||| || |.| ||||||| &5' -AGGAACA-AGTATCTCAGGA- 3' USP29 hsa-miR-1202 beg:6 end:32 pic:3' GAG--GGGGTGACGTC-GACCGTG 5'& ||| ||.|||| || || ||| &5' CTCGGCCTCACTTCATCCTTGCA- 3' USP29 hsa-miR-1207-3p beg:342 end:360 pic:3' CTTTACTCCCGGTCGACT 5'& ||..|| | |||||| &5' GAGGTGTGAGCCAGC--- 3' USP29 hsa-miR-122 beg:4 end:24 pic:3' GTTTGTGGTAACAGTGTGAGGT 5'& |||. | | ||||.|| &5' ----CACTCG-GCCTCACTTCA 3' USP29 hsa-miR-1231 beg:151 end:167 pic:3' CGTCGACAGGCG-GGTCTGTG 5'& |.|| .||||||| &5' --------CTGCTTCAGACAC 3' USP29 hsa-miR-1237 beg:329 end:347 pic:3' GACCCCCTGCCTC---GTCTTCCT 5'& ||.| || |||.||| &5' ------GATGCAGAAACAGGAGG- 3' USP29 hsa-miR-1279 beg:335 end:354 pic:3' TCTTTCTTCGTTATACT 5'& ||||| |.| .|.||| &5' AGAAACAGGAGGTGTGA 3' USP29 hsa-miR-1289 beg:361 end:384 pic:3' TTTTACGTCTAAGGACCTGAGGT 5'& |.||| ||||||. | ||| &5' -AGATGGAGATTCTAGTGCTC-- 3' USP29 hsa-miR-1290 beg:21 end:42 pic:3' AGGGACTAGGTTTTTAGGT 5'& |||.|| .|.||||| &5' TCCTTGCAAAGAGAATCC- 3' USP29 hsa-miR-1290 beg:48 end:69 pic:3' AGGGACTAGGTTTTTAGGT 5'& |||.|| .|.||||| &5' TCCTTGCAAAGAGAATCC- 3' USP29 hsa-miR-1296 beg:361 end:384 pic:3' CCTCTACCTC---GGTCCCGGGATT 5'& |||||||| |.|| ||.| &5' --AGATGGAGATTCTAGTGCTC--- 3' USP29 hsa-miR-1303 beg:308 end:326 pic:3' TCTCGTTCTGGGGCAGAGATTT 5'& .| | ||||||.| &5' ------GGGTCAC-TCTCTAGA 3' USP29 hsa-miR-1306 beg:312 end:331 pic:3' GTGGT-GGTCTCGGTTGCA 5'& |||. |.||| ||||| &5' CACTCTCTAGA-CCAAC-- 3' USP29 hsa-miR-1322 beg:344 end:365 pic:3' GTCGTAGTC-GTCG-TAGTAG 5'& .|..| || |||| |||| &5' -GGTGTGAGCCAGCAATCA-- 3' USP29 hsa-miR-1323 beg:216 end:238 pic:3' TCTTTTACGGGGAGT-CAAAACT 5'& ..|||.|.||| ||||||| &5' ----GGTGCTCTTCACGTTTTGA 3' USP29 hsa-miR-135bstar beg:11 end:32 pic:3' GGGTACCGAAAATC----GGGATGTA 5'& ||| ||.|.|| &5' -----GGCCTCACTTCATCCTTGCA- 3' USP29 hsa-miR-136 beg:352 end:372 pic:3' AGGTAGTAGTTTTGTTTACCTCA 5'& ||| ||| ||.|||||| &5' -CCAG---CAAT-CAGATGGAG- 3' USP29 hsa-miR-181cstar beg:223 end:246 pic:3' CAGGTGAGTTGCCAGCTACCAA 5'& |.||| .| ||.||||| &5' -TTCACGTTTTGA-CGGTGGTT 3' USP29 hsa-miR-1909 beg:190 end:208 pic:3' GCCACTCGTGGGCCGGGGACGC 5'& |||. .|||||| &5' ------GCATATTTTCCCTGC- 3' USP29 hsa-miR-190b beg:177 end:200 pic:3' TTGGGTTATAGTT--TGTATAGT 5'& |||.||. || .|||||. &5' AACTCAGGCGCATATGCATATT- 3' USP29 hsa-miR-1911 beg:199 end:226 pic:3' GGGTTG-TCTGTACC-GCCATGAGT 5'& ||| .| |||. .|||.||| &5' CCCTGCAAGATTAGAATGGTGCTC- 3' USP29 hsa-miR-199a-3p beg:422 end:442 pic:3' ATTGGTTACACGTC---TGATGACA 5'& |||.| .||||||| &5' --------GTGTATTTTGCTACTGT 3' USP29 hsa-miR-199b-3p beg:422 end:442 pic:3' ATTGGTTACACGTC---TGATGACA 5'& |||.| .||||||| &5' --------GTGTATTTTGCTACTGT 3' USP29 hsa-miR-199b-5p beg:383 end:406 pic:3' CTTGTCTATCAGATT---TGTGACCC 5'& || |||.|.| ||||||| &5' -----GAAAGTTTGAAGAACACTGG- 3' USP29 hsa-miR-19b-1star beg:190 end:214 pic:3' CGACCTACGTTT-----GGACGTTTTGA 5'& ||||| |||||||.|.| &5' -----ATGCATATTTTCCCTGCAAGATT 3' USP29 hsa-miR-19b-2star beg:293 end:319 pic:3' ACTTTACGTTT--GGACGTTTTGA 5'& |||||||||| |.|| . ||| &5' -GAAATGCAAATTCTTGGGTCACT 3' USP29 hsa-miR-205 beg:69 end:92 pic:3' GTCTGAGGCCAC-CTTACTTCCT 5'& |||.| |||||||||| &5' ---ACTTCACTCAGAATGAAGGA 3' USP29 hsa-miR-20astar beg:321 end:339 pic:3' GAAATTCACGAGT--ATTACGTCA 5'& | || |.|||||| &5' --------GACCAACTGATGCAG- 3' USP29 hsa-miR-210 beg:178 end:198 pic:3' AGTCGGCGACAGTGTGCGTGTC 5'& |||| ||| |.|.|||.| &5' TCAGGCGC----ATATGCATA- 3' USP29 hsa-miR-2117 beg:21 end:40 pic:3' GACAGGAACCGTTTCTCTTGT 5'& ||||| ||||||||||. &5' ---TCCTT-GCAAAGAGAAT- 3' USP29 hsa-miR-2117 beg:48 end:67 pic:3' GACAGGAACCGTTTCTCTTGT 5'& ||||| ||||||||||. &5' ---TCCTT-GCAAAGAGAAT- 3' USP29 hsa-miR-23astar beg:166 end:189 pic:3' TTTAGGGTAG-GGGTCCTTGGGG 5'& |.|||||| |.|||| .| &5' AGATCCCAGAACTCAGGCGC--- 3' USP29 hsa-miR-26a-1star beg:202 end:221 pic:3' GCACGTTCATTGGTTCTTATCC 5'& |||||| |||||.| &5' --TGCAAGATT---AGAATGG- 3' USP29 hsa-miR-26a-2star beg:203 end:221 pic:3' CTTTGTTCATTAGTTCTTATCC 5'& .|||| ||. |||||.| &5' ---GCAAG--ATT-AGAATGG- 3' USP29 hsa-miR-299-5p beg:341 end:358 pic:3' TACATACACCCTGC-CATTTGGT 5'& ||| | ||.|.||| &5' ---------GGAGGTGTGAGCCA 3' USP29 hsa-miR-29a beg:209 end:225 pic:3' ATTGGCTAAAGTC-TACCACGAT 5'& |.|| |||||||| &5' ---------TTAGAATGGTGCT- 3' USP29 hsa-miR-29b beg:207 end:225 pic:3' TTGTGACTAAAGTTTACCACGAT 5'& |||| .||||||||| &5' ------GATTA-GAATGGTGCT- 3' USP29 hsa-miR-29c beg:207 end:225 pic:3' ATTGGCTAAAGTTTACCACGAT 5'& |||| .||||||||| &5' -----GATTA-GAATGGTGCT- 3' USP29 hsa-miR-3129 beg:431 end:442 pic:3' TTTGGTTAGAGATGTGATGACG 5'& .||||||. &5' --------------GCTACTGT 3' USP29 hsa-miR-3148 beg:182 end:204 pic:3' TTCGTGTGTG-GTCAAAAAAGGT 5'& |.||.||.|. || |||||| &5' AGGCGCATATGCATA-TTTTCC- 3' USP29 hsa-miR-335star beg:354 end:373 pic:3' CCAGTCCTCGTTA--TTACTTTTT 5'& |||||| .|||.|.| &5' -------AGCAATCAGATGGAGA- 3' USP29 hsa-miR-361-3p beg:122 end:141 pic:3' TTTAGTCTTAGTGT---GGACCCCCT 5'& ||| ..||||||| &5' ----------CACTTATTTTGGGGGA 3' USP29 hsa-miR-373 beg:168 end:189 pic:3' TGTGGGGTTTT-AGCTTCGTGAAG 5'& |.||||.|| || |.||.| &5' --ATCCCAGAACTC-AGGCGC--- 3' USP29 hsa-miR-373star beg:116 end:138 pic:3' CCTTTCGCGGGGGTAAAACTCA 5'& |||| |..||||||.| &5' -GAAAAACA-CTTATTTTGGG- 3' USP29 hsa-miR-379star beg:452 end:467 pic:3' TCAATCACCTGGTACAATGTAT 5'& ..||||||.||| &5' ----------TTATGTTATATA 3' USP29 hsa-miR-380star beg:251 end:269 pic:3' CGCGTACAAGATACCAGTTGGT 5'& |. |||||| ||||||| &5' --GT-TGTTCT----TCAACCA 3' USP29 hsa-miR-409-5p beg:296 end:319 pic:3' TACGTTTCAACGAGCCCATTGGA 5'& ||||||| || ||.|||| ||. &5' ATGCAAA-TT-CTTGGGTCACT- 3' USP29 hsa-miR-424star beg:216 end:237 pic:3' TATCGTCGCGGAGTGCAAAAC 5'& ||.|. || |.|||||||||| &5' ATGGT-GCTCTTCACGTTTTG 3' USP29 hsa-miR-4263 beg:278 end:299 pic:3' CCGGTTCC-GTG-AATCTTA 5'& ||.|.|| | |||||| &5' -GCTAGGGACTGATTAGAA- 3' USP29 hsa-miR-4265 beg:339 end:361 pic:3' GGGTC--TCG-ACTCGGGTGTC 5'& ||| .|. |||||| .|| &5' --CAGGAGGTGTGAGCCAGCA- 3' USP29 hsa-miR-4291 beg:431 end:445 pic:3' TCGACAAGGACGACTT 5'& ||| |||.||| &5' -GCTA---CTGTTGA- 3' USP29 hsa-miR-4298 beg:10 end:35 pic:3' GACGGAG-GAGG-AGGACAGGGTC 5'& ||||| ||.| |||| | || &5' --GCCTCACTTCATCCTTGCAAAG 3' USP29 hsa-miR-4303 beg:65 end:85 pic:3' GACA-GGAGTCGAGTCTT 5'& |||| |.||| ||||||| &5' CTGTACTTCA-CTCAGAA 3' USP29 hsa-miR-4309 beg:364 end:384 pic:3' ACCT-TAGGATC-TGAGGTC 5'& |||| ||.|||| .||| &5' TGGAGATTCTAGTGCTC--- 3' USP29 hsa-miR-4309 beg:31 end:51 pic:3' AC-CTTAGGATCTGAGGTC 5'& | |||||||. |||.|| &5' -GAGAATCCTGTACTTCA- 3' USP29 hsa-miR-4309 beg:58 end:78 pic:3' AC-CTTAGGATCTGAGGTC 5'& | |||||||. |||.|| &5' -GAGAATCCTGTACTTCA- 3' USP29 hsa-miR-4311 beg:2 end:23 pic:3' GTGTGAGTCGAGAGA-AAG 5'& | |||||.|| ||| ||| &5' CTCACTCGGC-CTCACTTC 3' USP29 hsa-miR-431 beg:200 end:213 pic:3' ACGTACTGCCGGACGTTCTGT 5'& |||||||||. &5' ----------CCTGCAAGAT- 3' USP29 hsa-miR-4314 beg:163 end:179 pic:3' GACAGGGTAAAGGGTCTC 5'& ||.| ||||||| &5' ----CCTAGATCCCAGA- 3' USP29 hsa-miR-4324 beg:85 end:106 pic:3' AATTCCAA--TCCCAGAGTCCC 5'& |||| || ||||||| &5' --AAGGAACAAGTATCTCAGG- 3' USP29 hsa-miR-433 beg:366 end:388 pic:3' TGTGGCTCCTCG--GGT----AGTACTA 5'& |||| |.| |||||| &5' -------GGAGATTCTAGTGCTCATGA- 3' USP29 hsa-miR-455-3p beg:436 end:455 pic:3' CACATATACGG--GTACCTGACG 5'& ||. .|||||.||| &5' -------TGTTGATATGGATTGC 3' USP29 hsa-miR-544 beg:329 end:341 pic:3' CTTGAACGATTTTTACGTCTTA 5'& .|||||||| &5' ------------GATGCAGAA- 3' USP29 hsa-miR-544 beg:283 end:304 pic:3' CTTGAACGATTTTTACGTCTTA 5'& |.||| .||.||||||| &5' GGACTGATTAGAAATGCA---- 3' USP29 hsa-miR-544b beg:85 end:106 pic:3' AATCTTTACGTGT---TGGAGTCCA 5'& |||. ||| |.|||||| &5' ---GAAGGA-ACAAGTATCTCAGG- 3' USP29 hsa-miR-550 beg:169 end:189 pic:3' CCCGAGAATGAGGG-----AGTCCGTGA 5'& |||| ||||||.| &5' ----------TCCCAGAACTCAGGCGC- 3' USP29 hsa-miR-557 beg:17 end:34 pic:3' TCTGTTCCGGGTGGGCACGTTTG 5'& ..||.|| |||||| &5' --------TTCATCCTTGCAAA- 3' USP29 hsa-miR-557 beg:44 end:61 pic:3' TCTGTTCCGGGTGGGCACGTTTG 5'& ..||.|| |||||| &5' --------TTCATCCTTGCAAA- 3' USP29 hsa-miR-573 beg:3 end:24 pic:3' GACTAGTCAA-TGTGTAGTGAAGTC 5'& ||| .| | |||||||| &5' ----TCACTCGGC-C-TCACTTCA- 3' USP29 hsa-miR-589 beg:224 end:250 pic:3' GAGTCTCGT--CTG-CACCAAGAGT 5'& ||| |. ||| ||||||.||| &5' -TCAC-GTTTTGACGGTGGTTTTCA 3' USP29 hsa-miR-601 beg:154 end:174 pic:3' GAGGAGGTTGTTAGGATCTGGT 5'& |.|| .||| ||||||.| &5' --CTTCAGACA--CCTAGATC- 3' USP29 hsa-miR-615-3p beg:361 end:384 pic:3' TTCTCCCTCT-GGGTC-CGAGCCT 5'& ||| ||||| .|.|| |||| &5' -AGATGGAGATTCTAGTGCTC--- 3' USP29 hsa-miR-642 beg:121 end:141 pic:3' GTTCTGTGTAAACCTCTCCCTG 5'& |||| |.|||| &5' ----ACACTTATTTTGGGGGA- 3' USP29 hsa-miR-767-5p beg:202 end:224 pic:3' GTACGAGTCTGTTGGTACCACGT 5'& ||| |||. ||||||| &5' --TGCA-AGATTAGAATGGTGC- 3' USP29 hsa-miR-769-3p beg:156 end:178 pic:3' TTGGTTCTG-GGGCCTCTAGGGTC 5'& .| |||| ||. ||||||||| &5' --TC-AGACACCT--AGATCCCAG 3' USP29 hsa-miR-876-5p beg:98 end:115 pic:3' ACCACTAAGTGTTTCTTTAGGT 5'& ||| .| ||||||. &5' -------TCAGGATGAAATCT- 3' USP29 hsv2-miR-H22 beg:153 end:176 pic:3' CG-GGTGGGTGCAGGTCTGGGGA 5'& || .|| ||| |.|||.||| &5' GCTTCAGACAC--CTAGATCCC- 3' USP29 kshv-miR-K12-7 beg:351 end:375 pic:3' CGCGGTCGTTG---TACC-CTAGT 5'& ||||||||. |||| |||. &5' --GCCAGCAATCAGATGGAGATT- 3' USP29 sv40-miR-S1-3p beg:326 end:346 pic:3' TGAGTCCCGTACTTTGTCCG 5'& ||| | ||| |||||||| &5' ACTGAT-GCA-GAAACAGG- 3'

DNA & RNA Element - miRcode Gene Name Type microRNA Seed Position Seed Type Total Cons% Tr Region USP29 High_conserved miR-130ac/301ab/301b/301b-3p/454/721/4295/3666 chr19:57641927 7-mer-A1 11 CDS USP29 High_conserved miR-132/212/212-3p chr19:57640031 7-mer-A1 13 5pUTR USP29 High_conserved miR-132/212/212-3p chr19:57640770 7-mer-m8 22 CDS USP29 High_conserved miR-133abc chr19:57642647 7-mer-A1 9 CDS USP29 High_conserved miR-9/9ab chr19:57641299 7-mer-m8 20 CDS USP29 High_conserved miR-93/93a/105/106a/291a-3p/294/295/302abcde/372/373/428/519a/520be/520acd-3p/1378/1420ac chr19:57631536 7-mer-m8 13 5pUTR USP29 High_conserved miR-96/507/1271 chr19:57640796 7-mer-A1 11 CDS USP29 High_conserved miR-135ab/135a-5p chr19:57642537 7-mer-A1 13 CDS USP29 High_conserved miR-137/137ab chr19:57640663 7-mer-m8 13 CDS USP29 High_conserved miR-138/138ab chr19:57643083 7-mer-A1 13 3pUTR USP29 High_conserved miR-140/140-5p/876-3p/1244 chr19:57641438 7-mer-m8 18 CDS USP29 High_conserved miR-141/200a chr19:57641185 7-mer-m8 29 CDS USP29 High_conserved miR-141/200a chr19:57642528 7-mer-m8 20 CDS USP29 High_conserved miR-143/1721/4770 chr19:57641266 7-mer-m8 13 CDS USP29 High_conserved miR-146ac/146b-5p chr19:57641382 7-mer-A1 22 CDS USP29 High_conserved miR-150/5127 chr19:57631542 7-mer-m8 13 5pUTR USP29 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr19:57631537 7-mer-m8 13 5pUTR USP29 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr19:57633721 7-mer-m8 11 5pUTR USP29 High_conserved miR-17/17-5p/20ab/20b-5p/93/106ab/427/518a-3p/519d chr19:57641949 7-mer-A1 11 CDS USP29 High_conserved miR-182 chr19:57640796 7-mer-A1 11 CDS USP29 High_conserved miR-192/215 chr19:57641180 7-mer-m8 18 CDS USP29 High_conserved miR-194 chr19:57640033 8-mer 13 5pUTR USP29 High_conserved miR-194 chr19:57640929 8-mer 29 CDS USP29 High_conserved miR-196abc chr19:57642747 7-mer-A1 2 CDS USP29 High_conserved miR-203 chr19:57641121 7-mer-m8 18 CDS USP29 High_conserved miR-205/205ab chr19:57640426 7-mer-A1 9 CDS USP29 High_conserved miR-205/205ab chr19:57640600 7-mer-A1 16 CDS USP29 High_conserved miR-205/205ab chr19:57642903 8-mer 16 3pUTR USP29 High_conserved miR-216b/216b-5p chr19:57640708 7-mer-m8 7 CDS USP29 High_conserved miR-217 chr19:57640940 7-mer-m8 4 CDS USP29 High_conserved miR-23abc/23b-3p chr19:57640516 7-mer-A1 11 CDS USP29 High_conserved miR-23abc/23b-3p chr19:57641726 8-mer 11 CDS USP29 High_conserved miR-29abcd chr19:57643037 7-mer-m8 16 3pUTR USP29 High_conserved miR-338/338-3p chr19:57631507 7-mer-m8 11 5pUTR USP29 High_conserved miR-33ab/33-5p chr19:57643116 7-mer-A1 11 3pUTR USP29 High_conserved miR-383 chr19:57642054 7-mer-A1 4 CDS USP29 High_conserved miR-125a-5p/125b-5p/351/670/4319 chr19:57642776 7-mer-m8 13 CDS USP29 Medium_conserved miR-504/4725-5p chr19:57641562 7-mer-m8 31 CDS USP29 Medium_conserved miR-539/539-5p chr19:57642019 7-mer-m8 16 CDS USP29 Medium_conserved miR-543 chr19:57641106 8-mer 20 CDS USP29 Medium_conserved miR-544/544ab/544-3p chr19:57641133 8-mer 16 CDS USP29 Medium_conserved miR-544/544ab/544-3p chr19:57641156 7-mer-m8 24 CDS USP29 Medium_conserved miR-544/544ab/544-3p chr19:57643153 8-mer 13 3pUTR USP29 Medium_conserved miR-590-3p chr19:57641216 7-mer-A1 13 CDS USP29 Medium_conserved miR-592/599 chr19:57642070 7-mer-m8 13 CDS USP29 Medium_conserved miR-653 chr19:57641596 8-mer 11 CDS USP29 Medium_conserved miR-873 chr19:57640341 7-mer-m8 13 CDS USP29 Medium_conserved miR-874 chr19:57641961 7-mer-A1 11 CDS USP29 Medium_conserved miR-876-5p/3167 chr19:57640751 7-mer-m8 11 CDS USP29 Medium_conserved miR-149 chr19:57640089 8-mer 11 CDS USP29 Medium_conserved miR-154/872 chr19:57640757 7-mer-A1 24 CDS USP29 Medium_conserved miR-185/882/3473/4306/4644 chr19:57633838 7-mer-A1 7 5pUTR USP29 Medium_conserved miR-185/882/3473/4306/4644 chr19:57635461 7-mer-A1 18 5pUTR USP29 Medium_conserved miR-185/882/3473/4306/4644 chr19:57641409 8-mer 29 CDS USP29 Medium_conserved miR-185/882/3473/4306/4644 chr19:57641556 7-mer-A1 13 CDS USP29 Medium_conserved miR-185/882/3473/4306/4644 chr19:57642505 7-mer-A1 11 CDS USP29 Medium_conserved miR-186 chr19:57641462 8-mer 22 CDS USP29 Medium_conserved miR-186 chr19:57641475 7-mer-A1 22 CDS USP29 Medium_conserved miR-197 chr19:57641614 7-mer-A1 20 CDS USP29 Medium_conserved miR-224 chr19:57640982 7-mer-A1 24 CDS USP29 Medium_conserved miR-326/330/330-5p chr19:57641867 7-mer-A1 18 CDS USP29 Medium_conserved miR-335/335-5p chr19:57640873 7-mer-A1 9 CDS USP29 Medium_conserved miR-340-5p chr19:57640188 7-mer-A1 9 CDS USP29 Medium_conserved miR-370 chr19:57640413 7-mer-A1 16 CDS USP29 Medium_conserved miR-370 chr19:57640900 7-mer-m8 4 CDS USP29 Medium_conserved miR-370 chr19:57642292 7-mer-m8 16 CDS USP29 Medium_conserved miR-376c/741-5p chr19:57642624 7-mer-m8 2 CDS USP29 Medium_conserved miR-125a-3p/1554 chr19:57640260 7-mer-m8 13 CDS USP29 Medium_conserved miR-433 chr19:57631466 7-mer-m8 13 5pUTR USP29 Medium_conserved miR-448/448-3p chr19:57643008 7-mer-m8 13 3pUTR USP29 Medium_conserved miR-488 chr19:57640171 7-mer-A1 13 CDS USP29 Medium_conserved miR-495/1192 chr19:57641307 7-mer-m8 27 CDS

DNA & RNA Element - RAID2 Gene Name RAID ID Interactor 1 Category 1 ID 1 Interactor 2 Category 2 ID 2 Methods Score USP29 RAID00120281 hsa-miR-4284 miRNA MIMAT0016915 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00125025 hsa-miR-6506-5p miRNA MIMAT0025468 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00389373 hsa-miR-335-5p miRNA MIMAT0000765 USP29 mRNA 57663 Microarray 0.5483 USP29 RAID00419464 hsa-miR-4753-3p miRNA MIMAT0019891 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00605253 hsa-miR-6776-3p miRNA MIMAT0027453 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00638194 hsa-miR-660-3p miRNA MIMAT0022711 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00715920 hsa-miR-5584-5p miRNA MIMAT0022283 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00762035 hsa-miR-1228-3p miRNA MIMAT0005583 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID00871418 hsa-miR-27b-3p miRNA MIMAT0000419 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01156645 hsa-miR-448 miRNA MIMAT0001532 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01296336 hsa-miR-342-3p miRNA MIMAT0000753 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01311158 hsa-miR-301a-3p miRNA MIMAT0000688 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01376424 hsa-miR-601 miRNA MIMAT0003269 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01379092 hsa-miR-205-5p miRNA MIMAT0000266 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01478632 hsa-miR-29c-3p miRNA MIMAT0000681 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01657922 hsa-miR-876-5p miRNA MIMAT0004924 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01664760 hsa-miR-149-5p miRNA MIMAT0000450 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01713476 hsa-miR-216a-5p miRNA MIMAT0000273 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01758927 hsa-miR-301b-3p miRNA MIMAT0004958 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01976392 hsa-miR-1200 miRNA MIMAT0005863 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID01986337 hsa-miR-6809-3p miRNA MIMAT0027519 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02103474 hsa-miR-4668-5p miRNA MIMAT0019745 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02171785 hsa-miR-29a-3p miRNA MIMAT0000086 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02209405 hsa-miR-199b-5p miRNA MIMAT0000263 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02311903 hsa-miR-619-5p miRNA MIMAT0026622 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02329937 hsa-miR-29b-3p miRNA MIMAT0000100 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02343637 hsa-miR-335-3p miRNA MIMAT0004703 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02446713 hsa-miR-150-5p miRNA MIMAT0000451 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02573863 hsa-miR-4793-5p miRNA MIMAT0019965 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID02660690 hsa-miR-497-3p miRNA MIMAT0004768 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03015379 hsa-miR-506-3p miRNA MIMAT0002878 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03172590 hsa-miR-410-3p miRNA MIMAT0002171 USP29 mRNA 57663 Prediction 0.2202 USP29 RAID03264637 hsa-miR-183-5p miRNA MIMAT0000261 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03327480 hsa-miR-7973 miRNA MIMAT0031176 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03380030 hsa-miR-421 miRNA MIMAT0003339 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03512472 hsa-miR-4711-5p miRNA MIMAT0019816 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03560240 hsa-miR-27a-3p miRNA MIMAT0000084 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03562560 hsa-miR-450b-5p miRNA MIMAT0004909 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03636678 hsa-miR-3679-3p miRNA MIMAT0018105 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03756047 hsa-miR-576-5p miRNA MIMAT0003241 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03863862 hsa-miR-544a miRNA MIMAT0003164 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03897951 hsa-miR-6720-3p miRNA MIMAT0025851 USP29 mRNA 57663 Prediction 0.1828 USP29 RAID03900976 hsa-miR-199a-5p miRNA MIMAT0000231 USP29 mRNA 57663 Prediction 0.1828