Disease associated variation - ClinVar | Allele ID | Type | Name | RS#dbSNP | Phenotype IDs | Chromosome | Start | Stop | Reference | Alternate | 160423 | copy number loss | GRCh38/hg38 1q25.1(chr1:173938666-174111110)x1 | -1 | - | 1 | 173907804 | 174080248 | na | na | 160423 | copy number loss | GRCh38/hg38 1q25.1(chr1:173938666-174111110)x1 | -1 | - | 1 | 173938666 | 174111110 | na | na | 160423 | copy number loss | GRCh38/hg38 1q25.1(chr1:173938666-174111110)x1 | -1 | - | 1 | 172174427 | 172346871 | na | na | |
Disease associated variation - GWASdb | Chr | Pos | SNP ID(dbSNP 142) | Ref | Alt | Ori SNP ID | P-value | Drug Name | Drug Anno | GWAS Trait | HPO ID | DO ID | AA | Type | Trait or Drug | 1 | 173961992 | rs10912711 | T | C | rs10912711 | 8.37E-04 | | | Multiple complex diseases | HPOID:0000118 | NA | T | cds-synon | GWASdb_trait | |
Disease associated variation - GWAS Central | Study Name | Source Marker Accession | Chromosome | Marker Start | Marker Stop | Alleles | Gene Section | P-value | -log(p-value) | GWAS of prostate cancer | rs10798301 | 1 | 173949332 | 173949332 | | intronic | 0.897298 | 0.0470633002529554 | GWAS of prostate cancer | rs1884994 | 1 | 173950282 | 173950282 | | intronic | 0.187165 | 0.727775361409947 | GWAS of prostate cancer | rs11579488 | 1 | 173941617 | 173941617 | | intronic | 0.000635 | 3.19722627470802 | |
Disease associated variation - OMIM | Ensembl_gene_ID | Approved Gene Symbol | MIM Number | ENSG00000135870.11 | RC3H1 | 609424 | |