WDR38
DNA & RNA Element - UTRdb
Gene NameTypeASPicDBUTRaspicRefseq IDGenome
WDR383'UTRb43b24a959BA119346NM_001045476chr9:126659731-126659981:+
WDR383'UTR4b2d828246NM_001045476chr9:126657743-126659984:+
WDR385'UTRb43b24a959CA187424NM_001045476chr9:126655576-126655631:+
DNA & RNA Element - CircNet
Circ IDGITPositionExpressSymbolEntrezCategoryStrandRefered Name
hsa-circ-WDR38-antisense.4NM_001276376Tchr9:127619935-127620630noneWDR38401551protein-coding-not_available
DNA & RNA Element - microRNA
Mirbase AccmiRNA NameGene IDGene SymbolmiRNA AlignmentAlignmentGene AlignmentmiRNA StartmiRNA EndGene StartGene EndGenome CoordinatesConservationAlign ScoreSeed CatEnergymirSVR Score
MIMAT0004496hsa-miR-23a*401551WDR38uuuaggGUAGGGGUCCUUGGGg |: :: | ||||||| gcaggaCGCUUGCUGGAACCCa217158179[hg19:9:127620067-127620088:+]0.44281447-19.03-0.3628
MIMAT0004508hsa-miR-92a-2*401551WDR38cauuacguuGUUUAGGGGUGGg | |: ||||||| caggacucuCCAGGCCCCACCa214117138[hg19:9:127620026-127620047:+]0.43501457-19.22-0.2084
MIMAT0004514hsa-miR-29b-1*401551WDR38agAUUUGGUGGUAUA----CUUUGGUCg | |: |||| :| ||||||| caUCAGACACCUGGUCCCCAAAACCAGa223178205[hg19:9:127620087-127620114:+]0.44281417-19.13-0.1314
MIMAT0004558hsa-miR-181a-2*401551WDR38ccAUGUCAGUUGCCAGUCACCa | || ||| ||||||| ccUCCACCCAA---UCAGUGGa221214232[hg19:9:127620123-127620141:+]0.39611447-11.90-0.1485
MIMAT0004568hsa-miR-221*401551WDR38uuuagauGUAACAU--ACGGUCCa || || | ||||||| acccaauCAGUGGAAGUGCCAGGa216219242[hg19:9:127620128-127620151:+]0.39611467-17.32-0.1613
MIMAT0004587hsa-miR-23b*401551WDR38uuuaguCGUACGGUCCUUGGGu || |||: ||||||| caggacGCUUGCU-GGAACCCa217159179[hg19:9:127620068-127620088:+]0.44281547-22.85-0.3352
MIMAT0003385hsa-miR-363*401551WDR38uuuaacguagcacuAGGUGGGc ||||||| cagacccacccaccUCCACCCa29202223[hg19:9:127620111-127620132:+]0.41941407-12.44-0.2497
MIMAT0003302hsa-miR-632401551WDR38agGGUGUCCUUCGUCUGUg |||| | |||||||| ccCCACCAG-AGCAGACAa218131148[hg19:9:127620040-127620057:+]0.43501557-24.08-0.4220
MIMAT0004925hsa-miR-876-3p401551WDR38acuuaaugaaacauUUGGUGGu ||||||| ----------caccAACCACCu29112[hg19:9:127619910-127619921:+]0.45351407-10.57-0.1010
MIMAT0004925hsa-miR-876-3p401551WDR38acuuaaugaaacauUUGGUGGu ||||||| ----------caccAACCACCu29112[hg19:9:127619910-127619921:+]0.45351407-10.57-0.1731
MIMAT0005865hsa-miR-1202401551WDR38gagggggUGACGUCGACCGUg ||||: ||||||| caaagugACUGU-GCUGGCAu2157998[hg19:9:127619988-127620007:+]0.43501527-20.81-0.1546
MIMAT0005878hsa-miR-1287401551WDR38cugagcuugGUGAC--UAGGUCGu ::||| ||||||| aagugacugUGCUGGCAUCCAGCa21481104[hg19:9:127619990-127620013:+]0.43501447-19.63-0.1484
MIMAT0005883hsa-miR-1293401551WDR38cguGUUUAGAGGUCU-GGUGGGu |||| ||||| |||||| cccCAAA--ACCAGACCCACCCa220193213[hg19:9:127620102-127620122:+]0.41941286-24.58-0.2168
MIMAT0005929hsa-miR-1275401551WDR38cuGUCGGAGAGGGG-GUg | ||:||||||| || ugCCGCUUCUCCCCACAg2165875[hg19:9:127619967-127619984:+]0.43501270-22.20-0.1178
MIMAT0015014hsa-miR-3144-5p401551WDR38gauauauagagaaACCAGGGGa |||||||| cccaucagacaccUGGUCCCCa210176197[hg19:9:127620085-127620106:+]0.44281457-15.84-0.5596
MIMAT0015023hsa-miR-3150401551WDR38gguuggagcuccuAGAGGGGUc |||||||| caggcaugccgcuUCUCCCCAc2105273[hg19:9:127619961-127619982:+]0.43751457-18.92-0.2870
MIMAT0015023hsa-miR-3150401551WDR38gguuggagcuccuAGAGGGGUc |||||||| caggcaugccgcuUCUCCCCAc2105273[hg19:9:127619961-127619982:+]0.43751457-18.92-0.1267
MIMAT0015052hsa-miR-3175401551WDR38ugCAGUGACGCAAGAGAGGGGc | || ||| :||||||| caGGCA-UGCCGCUUCUCCCCa2215272[hg19:9:127619961-127619981:+]0.43751507-19.12-0.4393
MIMAT0015052hsa-miR-3175401551WDR38ugCAGUGACGCAAGAGAGGGGc | || ||| :||||||| caGGCA-UGCCGCUUCUCCCCa2215272[hg19:9:127619961-127619981:+]0.43751507-19.12-0.2499
MIMAT0015057hsa-miR-3180-5p401551WDR38gcugCACCCCGCCU-CGCA-GACCUUc ||||| ||| || | |||||| ugugGUGGGCAGGACGCUUGCUGGAAc222150176[hg19:9:127620059-127620085:+]0.43891366-26.08-0.1542
MIMAT0016918hsa-miR-4288401551WDR38ccuUUGAGUCGUCUGUu | | |||||||| cccACCAGAGCAGACAa215132148[hg19:9:127620041-127620057:+]0.43501467-13.93-0.4348
MIMAT0002807hsa-miR-491-5p401551WDR38ggaGUACCUUCCCAAGGGGUGa |||| : ||||||| aggCAUGCCGCUUCUCCCCACa2205374[hg19:9:127619962-127619983:+]0.43751437-17.51-0.1635
MIMAT0002807hsa-miR-491-5p401551WDR38ggaGUACCUUCCCAAGGGGUGa |||| : ||||||| aggCAUGCCGCUUCUCCCCACa2205374[hg19:9:127619962-127619983:+]0.43751437-17.51-0.1320
DNA & RNA Element - TRANSFAC
AccessionASDescriptionSpeciesEntrezPubmedBinding Info
G098340WDR38Homo sapiens401551
DNA & RNA Element - RepTar
Gene NamemiRNABeginEndProfile
WDR38hsa-miR-4252beg:31end:49pic:3' ACCACGACT-GAGTCACCGG 5'& ||| ||||||||| &5' ----GCTCCCCTCAGTGGC- 3'
WDR38ebv-miR-BART17-3pbeg:37end:61pic:3' TGATTCCCCTGTG-GTCCGTATGT 5'& || || || |.| |||||||.| &5' -CTCAGTGG-CGCACAGGCATGC- 3'
WDR38ebv-miR-BART19-3pbeg:227end:249pic:3' TCGTAAGGGTTCGTTTGTTTT 5'& .| | |||.| |||||||. &5' GGAAGTGCCAGG-AAACAAAG 3'
WDR38ebv-miR-BART5starbeg:150end:171pic:3' TCCACTTGTCGC-CGGGTG 5'& ||||..||| ||. | &5' -GGTGGGCAGGACGCTTGC 3'
WDR38ebv-miR-BART6-3pbeg:91end:112pic:3' AGATTCCGATCAGG----CTAGGGGC 5'& ||| ||| ||||||| &5' -----GGCA--TCCAGCAGATCCCC- 3'
WDR38ebv-miR-BART6-3pbeg:185end:197pic:3' AGATTCCGATCAGGCTAGGGGC 5'& |.|.||||| &5' ------------CTGGTCCCC- 3'
WDR38hsa-miR-632beg:129end:148pic:3' AGGGTGTCCTTCGTCTGTG 5'& ||||| .|||||||| &5' -CCCACCA-GAGCAGACA- 3'
WDR38hsa-miR-23bstarbeg:162end:179pic:3' TTTAGTCGTACGGTCCTTGGGT 5'& || |||. |||||||| &5' ------GCTTGCT-GGAACCCA 3'
WDR38hsa-miR-3144-5pbeg:186end:197pic:3' GATATATAGAGAAACCAGGGGA 5'& |||||||| &5' -------------TGGTCCCC- 3'
WDR38kshv-miR-K12-7starbeg:33end:51pic:3' GTATTTAGGGGCAGGCCACCGCGA 5'& ||||| || ||||||| &5' ------TCCCC-TCA-GTGGCGC- 3'
WDR38hcmv-miR-US33-3pbeg:75end:91pic:3' ACCTACACGAG-C-CTGGCACT 5'& || | |||.||| &5' -------GCAAAGTGACTGTG- 3'
WDR38hsa-miR-1182beg:104end:127pic:3' CAGTGTAGGGAG---GGTTCTGGGAG 5'& ||||| |||.|||.||| &5' -----ATCCCCATGGCCAGGACTCTC 3'
WDR38hsa-miR-1204beg:224end:246pic:3' TATTACC-TC-TGGTCCGGTGCT 5'& |.||| || .||||| || &5' --AGTGGAAGTGCCAGGAAAC-- 3'
WDR38hsa-miR-1231beg:167end:188pic:3' CGTCGACA---GGCGGGTCTGTG 5'& |||| || .||||||| &5' ---GCTGGAACCCA-TCAGACAC 3'
WDR38hsa-miR-1262beg:199end:213pic:3' TAGGAAGATGTTTAAGTGGGTA 5'& ||.| |||||| &5' ---------CAGACCCACCCA- 3'
WDR38hsa-miR-1263beg:37end:62pic:3' TGAGTCATA-CG-GTCCC-ATGGTA 5'& ||||||. || |||| |.|| &5' -CTCAGTGGCGCACAGGCATGCC-- 3'
WDR38hsa-miR-1271beg:225end:242pic:3' ACTCACGAACGATC-CACGGTTC 5'& |. ||||||.| &5' ---------GTGGAAGTGCCAGG 3'
WDR38hsa-miR-1293beg:198end:214pic:3' CGTGTTTAGAGGTCT-GGTGGGT 5'& ||||| ||||||| &5' ----------CCAGACCCACCCA 3'
WDR38hsa-miR-1294beg:12end:32pic:3' TCTGTTGTTACGGTTGGAGTGT 5'& .| .||||.||||||| &5' ----GATGGTGCCGACCTCAC- 3'
WDR38hsa-miR-1306beg:130end:147pic:3' GTGGTGGTCTCGGTTGCA 5'& |||||||||| .|| &5' --CCACCAGAGCAGAC-- 3'
WDR38hsa-miR-1322beg:91end:109pic:3' GTCGTA-GTCGTCGTAGTAG 5'& .|||| |||||| ||| &5' -GGCATCCAGCAG-ATC--- 3'
WDR38hsa-miR-139-5pbeg:138end:155pic:3' GACCTCTGTGCACGTGACATCT 5'& | ||||| |||||.| &5' --GCAGACA-----ACTGTGG- 3'
WDR38hsa-miR-181a-2starbeg:38end:48pic:3' CCATGTCAGTTGCCAGTCACCA 5'& ||||||| &5' --------------TCAGTGG- 3'
WDR38hsa-miR-182starbeg:157end:178pic:3' ATCAACCGTTCAGATCTTGGT 5'& || || | ||.||||| &5' -AGGACGCTTG-CTGGAACC- 3'
WDR38hsa-miR-1910beg:150end:174pic:3' TCCG-CCGTCC-GTGTCCTGACC 5'& ||. |||||| |.| .|||| &5' -GGTGGGCAGGACGCTT-GCTGG 3'
WDR38hsa-miR-193a-5pbeg:190end:210pic:3' AGTAGAGCGGGCGTT----TCTGGGT 5'& |.|| ||| ||||||| &5' -------GTCCCCAAAACCAGACCCA 3'
WDR38hsa-miR-2110beg:97end:113pic:3' GTGAGTCGCCGGCAAAGGGGTT 5'& |||| | |||||| &5' ----CAGCAGA----TCCCCA- 3'
WDR38hsa-miR-2110beg:56end:73pic:3' GTGAGTCGCCGGC-AA-AGGGGTT 5'& |||| || |||||| &5' ---------GCCGCTTCTCCCCA- 3'
WDR38hsa-miR-214beg:155end:173pic:3' TGACGGACAGACACGGACGACA 5'& || | ||.||||| &5' ---GCAGGAC---GCTTGCTG- 3'
WDR38hsa-miR-214starbeg:40end:58pic:3' CGTGTCGTTCACATC-TGTCCGT 5'& |||| | ||||||| &5' --------AGTGGCGCACAGGCA 3'
WDR38hsa-miR-221beg:169end:193pic:3' CTTTGGGTCGTCTGTTACATCGA 5'& |.|||||| |||||| |.|. &5' GGAACCCATCAGACACC-TGGT- 3'
WDR38hsa-miR-2861beg:204end:223pic:3' GGCGGGTGGCGGTCCGGGG 5'& || |||||| ||| ||| &5' CCACCCACCTCCA--CCC- 3'
WDR38hsa-miR-2861beg:112end:135pic:3' GGCGGG--TG-GCGGTCCGGGG 5'& ||| || | ||||||||| &5' --GCCAGGACTCTCCAGGCCCC 3'
WDR38hsa-miR-29b-1starbeg:185end:205pic:3' AGATTTGGTGGTATACTTTGGTCG 5'& ||.. || ||| ||||||| &5' -CTGGTCC-CCA----AAACCAG- 3'
WDR38hsa-miR-3150beg:53end:72pic:3' GGT-TGGAGCTCCTAGAGGGGTC 5'& || .|| |||||||| &5' -CATGCCGCT----TCTCCCCA- 3'
WDR38hsa-miR-3151beg:117end:138pic:3' TGGACT-AGGGTAACGGGGTGG 5'& || ||.| |||||||| &5' ----GACTCTCCAGGCCCCACC 3'
WDR38hsa-miR-3175beg:52end:72pic:3' TGCAGTG-ACGCAAGAGAGGGGC 5'& .| ||| .||||||| &5' -----GCATGCCGCTTCTCCCC- 3'
WDR38hsa-miR-3189beg:63end:82pic:3' GATGGGGTAGTCTGGGTTCCC 5'& || ||||| ||||| ||| &5' CT-CCCCA-CAGACGCAA--- 3'
WDR38hsa-miR-3191beg:182end:198pic:3' GACAGACCGGTCGATGCAGGGGT 5'& || ||. ||||||| &5' ---------CACCTG-GTCCCCA 3'
WDR38hsa-miR-4254beg:110end:132pic:3' CTCTACCA--CCTCATCGAGGTCCG 5'& |||| ||| |||||||| &5' ---ATGGCCAGGACT--CTCCAGGC 3'
WDR38hsa-miR-4296beg:59end:74pic:3' ACTCGGACTCGGGTGTA 5'& ||.| |||||| &5' ---GCTTCTCCCCACA- 3'
WDR38hsa-miR-4312beg:149end:172pic:3' ACC-CCTGTCCT-TGTTCCGG 5'& ||| ||.||||| .| ||. &5' TGGTGGGCAGGACGCTT-GCT 3'
WDR38hsa-miR-571beg:5end:31pic:3' GAGT-GAGTCTAC--CGGTT-GAGT 5'& || ||.||||| |||.| |||| &5' --CACCTTAGATGGTGCCGACCTCA 3'
WDR38hsa-miR-582-5pbeg:141end:153pic:3' TCATTGACCAACTTGTTGACATT 5'& .||||||||. &5' ------------GACAACTGTG- 3'
WDR38hsa-miR-593starbeg:7end:24pic:3' CGACTCGTTACGGACCG-ACCACGGA 5'& ||| ||||||| &5' -----------CCTTAGATGGTGCC- 3'
WDR38hsa-miR-597beg:36end:52pic:3' TGTCACCAGTAGCTCACTGTGT 5'& | || ||||.|.|| &5' --------CCTC-AGTGGCGCA 3'
WDR38hsa-miR-616beg:31end:49pic:3' GACGAGTTTGGGAGGTTACTGA 5'& |||| |||| ||.||.| &5' --GCTC---CCCT-CAGTGGC- 3'
WDR38hsa-miR-629beg:189end:210pic:3' TCAAGAGGGTTGCA-TTTGGGT 5'& || ||||| |.||||| &5' ---TC-CCCAAAACCAGACCCA 3'
WDR38hsa-miR-664starbeg:97end:120pic:3' TAGGTTAGTAAAAGGG--ATCGGTCA 5'& ||||. || |||| |.||||| &5' -TCCAG-CAGA-TCCCCATGGCCAG- 3'
WDR38hsa-miR-668beg:148end:174pic:3' CATCACCCGG-CT-CGGCTCACTGT 5'& ||.|||||| || ||. . ||. &5' GTGGTGGGCAGGACGCTTGCTGG-- 3'
WDR38hsa-miR-760beg:64end:85pic:3' AGGGGTGTCTGGGTCTCGGC 5'& ||||||||||| || ||. &5' TCCCCACAGACGCAAAGT-- 3'
WDR38hsa-miR-767-3pbeg:144end:163pic:3' TCTTTGGTACCCCATACTCGTCT 5'& |||..||| ||.||||. &5' ---AACTGTGG----TGGGCAGG 3'
WDR38hsa-miR-875-3pbeg:30end:56pic:3' GTGTT-GGAGTCACAAAG-GTCC 5'& |.| |||||||| | |||| &5' CGCTCCCCTCAGTGGCGCACAGG 3'
WDR38hsa-miR-886-3pbeg:26end:36pic:3' TTCCCAGTCATTCGTGGGCGC 5'& ||||||| &5' -------------CACCCGC- 3'
WDR38hsa-miR-939beg:21end:41pic:3' GTGGGGGTCTCGGAGT---CGAGGGGT 5'& || || ||||| ||||||| &5' -----CC-GA-CCTCACCCGCTCCCC- 3'
WDR38hsa-miR-939beg:56end:72pic:3' GTGGGGGTCTCGGAGTCGAGGGGT 5'& ||| | ||||||| &5' ----------GCCGCTTCTCCCCA 3'
WDR38hsa-miR-96beg:225end:240pic:3' TCGTTTTTACACGATCACGGTTT 5'& ||| |||||||. &5' ---------GTGGAAGTGCCAG- 3'
WDR38hsv2-miR-H20beg:187end:206pic:3' TCTTTCCCCAGGCA--TTGGTTT 5'& ||||| |||||.| &5' -------GGTCCCCAAAACCAGA 3'
WDR38hsv2-miR-H22beg:203end:223pic:3' CGGGTGGGTGCAGGTCTGGGGA 5'& ||||||||| ||| |||| &5' -CCCACCCACCTCC--ACCC-- 3'
WDR38hsv2-miR-H22beg:112end:135pic:3' CGGG--TGGGTGCAGGTCTGGGGA 5'& ||| ||.| |||||.|||| &5' GCCAGGACTC---TCCAGGCCCC- 3'
WDR38hsv2-miR-H23beg:88end:118pic:3' CGACCGT---TCGA-----GGTGCCGGA 5'& ||||||| ||| |||.|||| &5' GCTGGCATCCAGCAGATCCCCATGGCC- 3'
WDR38kshv-miR-K12-10astarbeg:116end:133pic:3' TCACCACCATAGCGGGGTTCGG 5'& || | |.|||.||| &5' ------GGA--CTCTCCAGGCC 3'
WDR38kshv-miR-K12-3starbeg:74end:91pic:3' ACAGTGTAAGACACTGGCGCT 5'& |.|| |||||.|.| &5' ---CGCAAA--GTGACTGTG- 3'
WDR38kshv-miR-K12-5beg:88end:110pic:3' TGGCCGTTCAAGGTCCG-TAGGAT 5'& .|.|||| ||||| |||| &5' GCTGGCA---TCCAGCAGATCC-- 3'
WDR38sv40-miR-S1-5pbeg:24end:44pic:3' TTCCGAGTAAAGTCCGGGGAGT 5'& |||| |. ||||||| &5' ----CTCACC-CGCTCCCCTCA 3'
DNA & RNA Element - miRcode
Gene NameTypemicroRNASeed PositionSeed TypeTotal Cons%Tr Region
WDR38High_conservedmiR-96/507/1271chr9:1276188437-mer-m80CDS
WDR38High_conservedmiR-138/138abchr9:1276190627-mer-A122CDS
WDR38High_conservedmiR-148ab-3p/152chr9:1276179827-mer-m811CDS
WDR38High_conservedmiR-150/5127chr9:1276165627-mer-A142CDS
WDR38High_conservedmiR-15abc/16/16abc/195/322/424/497/1907chr9:1276165257-mer-m816CDS
WDR38High_conservedmiR-18ab/4735-3pchr9:1276199237-mer-A103pUTR
WDR38High_conservedmiR-192/215chr9:1276164887-mer-A142CDS
WDR38High_conservedmiR-22/22-3pchr9:1276165797-mer-m820CDS
WDR38High_conservedmiR-103a/107/107abchr9:1276165247-mer-m816CDS
WDR38High_conservedmiR-103a/107/107abchr9:1276185357-mer-m829CDS
WDR38High_conservedmiR-124/124ab/506chr9:1276196797-mer-m818CDS
WDR38High_conservedmiR-124/124ab/506chr9:1276198137-mer-m842CDS
WDR38High_conservedmiR-338/338-3pchr9:1276200837-mer-A1183pUTR
WDR38Medium_conservedmiR-504/4725-5pchr9:1276181437-mer-A131CDS
WDR38Medium_conservedmiR-185/882/3473/4306/4644chr9:1276191217-mer-m827CDS
WDR38Medium_conservedmiR-185/882/3473/4306/4644chr9:1276200377-mer-A143pUTR
WDR38Medium_conservedmiR-328a/328b-3pchr9:1276190887-mer-m842CDS
WDR38Medium_conservedmiR-346chr9:1276200567-mer-A1113pUTR
WDR38Medium_conservedmiR-125a-3p/1554chr9:1276190977-mer-m833CDS
WDR38Medium_conservedmiR-491-5pchr9:1276199838-mer23pUTR
DNA & RNA Element - RAID2
Gene NameRAID IDInteractor 1Category 1ID 1Interactor 2Category 2ID 2MethodsScore
WDR38RAID00465358hsa-miR-4304miRNAMIMAT0016854WDR38mRNA401551Prediction0.1828
WDR38RAID00832810hsa-miR-4456miRNAMIMAT0018978WDR38mRNA401551Prediction0.1828
WDR38RAID01306631hsa-miR-6763-5pmiRNAMIMAT0027426WDR38mRNA401551Prediction0.1828
WDR38RAID01376590hsa-miR-6509-3pmiRNAMIMAT0025475WDR38mRNA401551Prediction0.1828
WDR38RAID01781188hsa-miR-4288miRNAMIMAT0016918WDR38mRNA401551Prediction0.1828
WDR38RAID02425898hsa-miR-6745miRNAMIMAT0027391WDR38mRNA401551Prediction0.1828
WDR38RAID02436616hsa-miR-632miRNAMIMAT0003302WDR38mRNA401551Prediction0.1828
WDR38RAID02576829hsa-miR-491-5pmiRNAMIMAT0002807WDR38mRNA401551Prediction0.1828
WDR38RAID02698435hsa-miR-363-5pmiRNAMIMAT0003385WDR38mRNA401551Prediction0.1828
WDR38RAID02850231hsa-miR-181a-2-3pmiRNAMIMAT0004558WDR38mRNA401551Prediction0.1828
WDR38RAID02888584hsa-miR-1227-5pmiRNAMIMAT0022941WDR38mRNA401551Prediction0.1828
WDR38RAID03297153hsa-miR-3144-5pmiRNAMIMAT0015014WDR38mRNA401551Prediction0.1828
WDR38RAID03623746hsa-miR-3150a-3pmiRNAMIMAT0015023WDR38mRNA401551Prediction0.1828